These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1657 fasta sequence [CGCACCTCGCCCCTCTCCTTCGCCATCGTCAACCTCCGACCCACCCGCCCTGGTCATATCCTTTATTTCTGCCAATTATGTGTATGCACAGCTGCTCTACTCCTCTCTCTAATTTAGTGCCTTCTAGTATCTACTTCACATTGCGGTATTATCTGCTCTCAACTTCTCATACTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTGCAAAAAAAAAAAACTTCTCTTGCTATTCATCAATGAAATGTGCCTCTGTTTCAAAAAGAAAAAAAAAGGAAAGAAAGAAAGACTCTGCACTGAACTACATAAGTAATGTACGATATCGGTTCATTGAAAAATGGTAGTGGTGTACATCACAGTGCTCACTTGTTTTTGCCTTCAGAAGGGTTATTGTGCTTTCTATTTCAAGACAATTAATACTACCTGCTTTACCTTGTTAATTTCTGGTCGTGCTAATTACTTCAGTTAATCCCTGGTGACAACTGGCAACTCAGCTCTTGTTGCCTTTGTCCTATGATGGATTGTATGTGGCACTGCATTTTTGACAGCCTAAGACTTTTAACTCCCCCCCCCACCCCCTTCCTTAACTTAAATTATACATGTTCTTATATGCCCAAAGAGTCTTGTGAAACTATTTGCTGATCTTAGCCCTGATGAGACTCGTGATTTGTGGATCATGGCAAAGGATATTGGTGTACGTGTTGAGCAGTACCAGAGGGCTTCTTCGCTCACATTCACAATTCAGGACGGACCTCACTCTGGCCAAACAGTTCCACATGTTCACGTTCATCGTTCCCCGAAGGAAGGAAGATTTTGAGAACAATGATAACAATAATGGCATGTATATTGTCAATATCTTTCGAATCTTTCTGAGAGGGACTGCAAATCTTAAGCACAAGTACAATGCAAATGAAACACGAAGTGCTGGTTTGAAGAAATTGAGTAACACGTAAGCATGGATACCCACCATCTCCTTCTCCGGCTCTCTCTTCGTGGAGGACACTAGTTTTGCCTCTTCTTCAGTCAGATCCGATCCAGAACAATGACGAAAGCCATGATCATCGCACAATCTACATTCGGTTGGACCTCAAGACTGAAAACATCTTCAGCAAGAGTCAGTGACAATGATGCTGCTCCAGCTTTCTTCCTCGTTATCCTTGCGACCTCCTCACCGCCGCTGTTGCGGATTTTGCAGCTTCTTCTCTTGAAACTGCCCTCGATTGAGAAGGCGGGAACATGGCCAGTACGATCTGACGACGCATGGGTACATCCTGACATGTGCACTTCTGCTTCATGACTGCTTTGCATAACTGAGCATTTTCTCATTGAGAAGAGTTGTTGTGATCTTGCCCTCTTGCCTTGGCCTTCTTCTGACGCTCTGTAACAATTCCATTGGTCATGCATGCTGATAATCTGTTGCAACAGCAGAAAGTAAAATAAAAATCTTAGTTCTTACTTACTCCCCATGGGTTCTATTAATGGTTTCTGTTCTTTTGGCCCATCTGCTGCACTTGTAACAAGAGGTAAAAGAACTTCAGTCGGAAAGTAGAATGAACTAGCGGATAAATCAAACTCTGTATGTAACTTCTCCATTTTTTAAGTTTTGTTT] [+] EMBL AK099904 [CGCACCTCGCCCCTCTCCTTCGCCATCGTCAACCTCCGACCCACCCGCCCTGGTCATATCCTTTATTTCTGCCAATTATGTGTATGCACAGCTGCTCTACTCCTCTCTCTAATTTAGTGCCTTCTAGTATCTACTTCACATTGCGGTATTATCTGCTCTCAACTTCTCATACTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTGCAAAAAAAAAAAACTTCTCTTGCTATTCATCAATGAAATGTGCCTCTGTTTCAAAAAGAAAAAAAAAGGAAAGAAAGAAAGACTCTGCACTGAACTACATAAGTAATGTACGATATCGGTTCATTGAAAAATGGTAGTGGTGTACATCACAGTGCTCACTTGTTTTTGCCTTCAGAAGGGTTATTGTGCTTTCTATTTCAAGACAATTAATACTACCTGCTTTACCTTGTTAATTTCTGGTCGTGCTAATTACTTCAGTTAATCCCTGGTGACAACTGGCAACTCAGCTCTTGTTGCCTTTGTCCTATGATGGATTGTATGTGGCACTGCATTTTTGACAGCCTAAGACTTTTAACTCCCCCCCCCACCCCCTTCCTTAACTTAAATTATACATGTTCTTATATGCCCAAAGAGTCTTGTGAAACTATTTGCTGATCTTAGCCCTGATGAGACTCGTGATTTGTGGATCATGGCAAAGGATATTGGTGTACGTGTTGAGCAGTACCAGAGGGCTTCTTCGCTCACATTCACAATTCAGGACGGACCTCACTCTGGCCAAACAGTTCCACATGTTCACGTTCATCGTTCCCCGAAGGAAGGAAGATTTTGAGAACAATGATAACAATAATGGCATGTATATTGTCAATATCTTTCGAATCTTTCTGAGAGGGACTGCAAATCTTAAGCACAAGTACAATGCAAATGAAACACGAAGTGCTGGTTTGAAGAAATTGAGTAACACGTAAGCATGGATACCCACCATCTCCTTCTCCGGCTCTCTCTTCGTGGAGGACACTAGTTTTGCCTCTTCTTCAGTCAGATCCGATCCAGAACAATGACGAAAGCCATGATCATCGCACAATCTACATTCGGTTGGACCTCAAGACTGAAAACATCTTCAGCAAGAGTCAGTGACAATGATGCTGCTCCAGCTTTCTTCCTCGTTATCCTTGCGACCTCCTCACCGCCGCTGTTGCGGATTTTGCAGCTTCTTCTCTTGAAACTGCCCTCGATTGAGAAGGCGGGAACATGGCCAGTACGATCTGACGACGCATGGGTACATCCTGACATGTGCACTTCTGCTTCATGACTGCTTTGCATAACTGAGCATTTTCTCATTGAGAAGAGTTGTTGTGATCTTGCCCTCTTGCCTTGGCCTTCTTCTGACGCTCTGTAACAATTCCATTGGTCATGCATGCTGATAATCTGTTGCAACAGCAGAAAGTAAAATAAAAATCTTAGTTCTTACTTACTCCCCATGGGTTCTATTAATGGTTTCTGTTCTTTTGGCCCATCTGCTGCACTTGTAACAAGAGGTAAAAGAACTTCAGTCGGAAAGTAGAATGAACTAGCGGATAAATCAAACTCTGTATGTAACTTCTCCATTTTTTAAGTTTTGTTT] consensusID : consensus_4710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 975 fasta sequence [ATTCGATCTTCCTTTCATAAGTAGTCAAATTTAGAACAAGTTACATGTTATGTTAGTCCCAGTCAATCGACAGTACAATTAGTGACTACAGTCTCATACTAGCTTCTTGAGTTAATTCGTCGATTTCACTTGAATTGAAACATCTATTTCCTACATGTCAAATAGAGCTCATCACCTTGAACTATGAAGAACAGATCATAGGTGTGTATGGCTTCCAGCAGATCCGATCCAGAACAATGACGAAAGCCATGATCATCGCACAATCTACATTCGGTTGGACCTCAAGACTGAAAACATCTTCAGCAAGAGTCAGTGACAATGATGCTGCTCCAGCTTTCTTCCTCGTTATCCTTGCGACCTCCTCACCGCCGCTGTTGCGGATCTTGCAGCTTCTTCTCTTGAAACTGCCCTCGATTGAGAAGGCGGGAACATGGCCAGTACGATCTGACGACGCATGGGTACATCCTGACATGTGCACTTCTGCTTCATGACTGCTTTGCATAACTGAGCATTTTCTCATTGAGAAGAGTTGTTGTGATCTTGCCCTCTTGCCTTGGCCTTCTTCTGACGCTCTGTAACAATTCCATTGGTCATGCATGCTGATAATCTGTGGGGTGAGGGCGAGGAGAGGCGAGCCATGTCCATCCATGAGCAGCAGGTCGCCGGAGAAGAGCTTGCGGCGGCGCGAGTAGTTGTCAACACGGAAGGCGAGGCTGCCGGCGTCGTCGTAGACGGAGAAGCCGTCGGTGCCCTGGAACCCCATGCTGGACCTCTTCCACACCGTGTACACCGCCGCTCGCGGCGCTGCCGTTGAGGCGGCGGCGGCGGCGGCATCTTGGCGTTGATACGAAGGGTGTATCCGACTCATCGATCTTCCTCGCCGCGATCGGATCTACCTATCTATCTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTGGCGTTGGACGAGAGATGTAGTGCTCGACTCGTCAG] [-] EMBL AK103389 [ATTCGATCTTCCTTTCATAAGTAGTCAAATTTAGAACAAGTTACATGTTATGTTAGTCCCAGTCAATCGACAGTACAATTAGTGACTACAGTCTCATACTAGCTTCTTGAGTTAATTCGTCGATTTCACTTGAATTGAAACATCTATTTCCTACATGTCAAATAGAGCTCATCACCTTGAACTATGAAGAACAGATCATAGGTGTGTATGGCTTCCAGCAGATCCGATCCAGAACAATGACGAAAGCCATGATCATCGCACAATCTACATTCGGTTGGACCTCAAGACTGAAAACATCTTCAGCAAGAGTCAGTGACAATGATGCTGCTCCAGCTTTCTTCCTCGTTATCCTTGCGACCTCCTCACCGCCGCTGTTGCGGATCTTGCAGCTTCTTCTCTTGAAACTGCCCTCGATTGAGAAGGCGGGAACATGGCCAGTACGATCTGACGACGCATGGGTACATCCTGACATGTGCACTTCTGCTTCATGACTGCTTTGCATAACTGAGCATTTTCTCATTGAGAAGAGTTGTTGTGATCTTGCCCTCTTGCCTTGGCCTTCTTCTGACGCTCTGTAACAATTCCATTGGTCATGCATGCTGATAATCTGTGGGGTGAGGGCGAGGAGAGGCGAGCCATGTCCATCCATGAGCAGCAGGTCGCCGGAGAAGAGCTTGCGGCGGCGCGAGTAGTTGTCAACACGGAAGGCGAGGCTGCCGGCGTCGTCGTAGACGGAGAAGCCGTCGGTGCCCTGGAACCCCATGCTGGACCTCTTCCACACCGTGTACACCGCCGCTCGCGGCGCTGCCGTTGAGGCGGCGGCGGCGGCGGCATCTTGGCGTTGATACGAAGGGTGTATCCGACTCATCGATCTTCCTCGCCGCGATCGGATCTACCTATCTATCTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTGGCGTTGGACGAGAGATGTAGTGCTCGACTCGTCAG] consensusID : consensus_4710#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [GATCATGGCAAAGGATATTGGTGTACGTGTTGAGCAGTACCAGAGGGCTTCTTCGCTCACATTCACAATTCAGTTGAATAAATATTGCTACTTATCAGGATGGACCTCACTCTGGCCAAACAGTTCCACATGTTCACGTTCACATCCTTCCCCGAAGGAAGGAAGATTTTGAGAACAATGATAACAATAATGGCATGATGAATGCAAAAAACGAGACATTAGACCTGGATATTGAAAGAAAAGATAGAACGATGGAAGAAATGGCCCAAGAAGCCAAAGAATATCGTGCTCTTTTCTCCTAGAAAATGTCTATTATATTGTCAATATCTTTCGAATCTTTCTGAGAGGGACTGCAAATCTTAAGCACAAGTACAATGCAAATNNNNCACGAAGTGCTGGTTTGANNNNNNTGAGTAACANNNNNGCATGGATANNNANCATCNNNTNCTCCGGCTCTCTNNTCGNNNNNNNNACTNNNNNNGNCTCNNNNNNNTAGCTCAT] [+] EMBL CF197299 [GATCATGGCAAAGGATATTGGTGTACGTGTTGAGCAGTACCAGAGGGCTTCTTCGCTCACATTCACAATTCAGTTGAATAAATATTGCTACTTATCAGGATGGACCTCACTCTGGCCAAACAGTTCCACATGTTCACGTTCACATCCTTCCCCGAAGGAAGGAAGATTTTGAGAACAATGATAACAATAATGGCATGATGAATGCAAAAAACGAGACATTAGACCTGGATATTGAAAGAAAAGATAGAACGATGGAAGAAATGGCCCAAGAAGCCAAAGAATATCGTGCTCTTTTCTCCTAGAAAATGTCTATTATATTGTCAATATCTTTCGAATCTTTCTGAGAGGGACTGCAAATCTTAAGCACAAGTACAATGCAAATNNNNCACGAAGTGCTGGTTTGANNNNNNTGAGTAACANNNNNGCATGGATANNNANCATCNNNTNCTCCGGCTCTCTNNTCGNNNNNNNNACTNNNNNNGNCTCNNNNNNNTAGCTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4710#0 CGCACCTCGCCCCTCTCCTTCGCCATCGTCAACCTCCGACCCACCCGCCCTGGTCATATC 60 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 ------------------------------------------------------------ consensus_4710#0 CTTTATTTCTGCCAATTATGTGTATGCACAGCTGCTCTACTCCTCTCTCTAATTTAGTGC 120 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 ------------------------------------------------------------ consensus_4710#0 CTTCTAGTATCTACTTCACATTGCGGTATTATCTGCTCTCAACTTCTCATACTTTATTAT 180 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 ------------------------------------------------------------ consensus_4710#0 TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAT 240 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 ------------------------------------------------------------ consensus_4710#0 TATTATTATTATTTGCAAAAAAAAAAAACTTCTCTTGCTATTCATCAATGAAATGTGCCT 300 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 ------------------------------------------------------------ consensus_4710#0 CTGTTTCAAAAAGAAAAAAAAAGGAAAGAAAGAAAGACTCTGCACTGAACTACATAAGTA 360 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 ------------------------------------------------------------ consensus_4710#0 ATGTACGATATCGGTTCATTGAAAAATGGTAGTGGTGTACATCACAGTGCTCACTTGTTT 420 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 -----ATTCGATCTTCCTTTCATAAGTAGTCAAATTTAGAACAAGTTACATGTTATGTTA 55 consensus_4710#0 TTGCCTTCAGAAGGGTTATTGTGCTTTCTATTTCAAGACAATTAATACTACCTGCTTTAC 480 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 GTCCCAGTCAATCGACAGTACAATTAGTGACTACAGTCTCATACTAGCTTCTTGAGTTAA 115 consensus_4710#0 CTTGTTAATTTCTGGTCGTGCTAATTACTTCAGTTAATCCCTGGTGACAACTGGCAACTC 540 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 TTCGTCGATTTCACTTGAATTGAAACATCTATTTCCTACATGTCAAATAGAGCTCATCAC 175 consensus_4710#0 AGCTC-TTGTTGCCTTTGTCCTATGATGGATTGTATGTGGCACTGCATTTTTGACAGCCT 599 consensus_4710#2 ------------------GATCATGGCAAAGGATAT-TGGTG-TACGTGTTGAGCAGTAC 40 consensus_4710#1 CTTGAACTATGAAGAACAGATCATAGGTGTGTATGGCTTCCAGCAGATCCGATCCAGAAC 235 ** * * * *** consensus_4710#0 AAGACTTTTAACTCC--CCCCCCCACCCCCTTCCTTAACTTAAATTATACATGTTCTTAT 657 consensus_4710#2 CAGAG----GGCTTC--TTCGCTCACATTCACAATTCAGTTGAAT---AAATATTGCTAC 91 consensus_4710#1 AATGACGAAAGCCATGATCATCGCACAATCTACATTCGGTTGGACCTCAAGACTGAAAAC 295 * * * *** * ** ** * * * * consensus_4710#0 -ATGCCCAAAGAGTCTTGTGAAACTA---TTTGCTGATC--TTAGCCCTGATGAGACTC- 710 consensus_4710#2 -TTATCAGGATGGACCTC----ACT----CTGGCCAAACAGTTCCACATGTTCACGTTC- 141 consensus_4710#1 ATCTTCAGCAAGAGTCAGTGACAATGATGCTGCTCCAGCTTTCTTCCTCGTTATCCTTGC 355 * * * * * * * * * * * * consensus_4710#0 -GTGATTTGTGGATCATGGCAAAGGATATTGGTGTACGTGTTGAGCAGTACCAGAGGGCT 769 consensus_4710#2 -ACATCCTTCCCCGAAGGAAGGAAGATTTTGAGAACAATGATAA-CAATA----ATGGCA 195 consensus_4710#1 GACCTCCTCACCGCCGCTGTTGCGGATCTTGCAGCTTCTTCTCTTGAAACTGCCCTCGAT 415 * *** *** * * * * consensus_4710#0 TCTTCGCTCACATTCACAATTCAGGACGGACCTCACTCTGGCCAAACAGTTCCACATGTT 829 consensus_4710#2 TGATGAATGCAAAAAACGAGACATTA--GACCTGGATATTGAAAGAAAAGATAGAACGAT 253 consensus_4710#1 TGA-GAAGGCGGGAACATGGCCAGTAC-GATCTGACGACGCATGGGTACATCCTGACATG 473 * ** * ** ** * * consensus_4710#0 CACGTTCATCGTTCCCCGAAGGAAGGAAGATTTTGAGAACAATGATA--ACAATAATGGC 887 consensus_4710#2 GGAAGAAATGGCCCAAGAAGCCAAAGAATATCGTGCTCTTTTCTCCT--AGAA-AATGTC 310 consensus_4710#1 TGCACTTCTGCTTCATGACTGCTTTGCATAACTGAGCATTTTCTCATTGAGAAGAGTTGT 533 * * * * * * ** * * consensus_4710#0 ATGTATATTGTCAATATCTTTCGAATCTTTCTGAGAGGGACTGCAA-ATCTTAAGCACAA 946 consensus_4710#2 TATTATATTGTCAATATCTTTCGAATCTTTCTGAGAGGGACTGCAA-ATCTTAAGCACAA 369 consensus_4710#1 TGTGATCTTGCCCTCTTGCCTTGG-CCTTCTTCTGACGCTCTGTAACAATTCCATTGGTC 592 ** *** * * * * *** * ** * *** ** * * * consensus_4710#0 GTACAATGCAAATGAAACACGAAGTGCTGGTTTGAAGAAATTGAGTAACACGTAAGCATG 1006 consensus_4710#2 GTACAATGCAAATNNNNCACGAAGTGCTGGTTTGANNNNNNTGAGTAACANNNNNGCATG 429 consensus_4710#1 ATGCA-TGCTGATAATCTGTGGGGTGAGGGCGAGGAGAGGC-GAGCCATGTCCATCCATG 650 * ** *** ** * *** ** * *** * **** consensus_4710#0 GATACCCACCATCTCCT------TCTCCGGCT-CTCTCTTCGTGGAGGACACTAGTTTTG 1059 consensus_4710#2 GATANNNANCATCNNNT------NCTCCGGCT-CTCTNNTCGNNNNNNNNACTNNNNNNG 482 consensus_4710#1 AGCAGCAGGTCGCCGGAGAAGAGCTTGCGGCGGCGCGAGTAGTTGTCAACACGGAAGGCG 710 * * * **** * * * * ** * consensus_4710#0 CCTCTTCTTCAGTCAGATCCGATCCAGAACAATGACGAAAGCCATGATCATCGCACAATC 1119 consensus_4710#2 NCTCNNNNNN--NTAGCTCAT--------------------------------------- 501 consensus_4710#1 AGGCTGCCGGCGTCGTCGTAGACGGAGAAGCCGTCGGTGCCCTGGAACCCCATGCTGGAC 770 * consensus_4710#0 TACATTCGGTTGGACCTCAAGACTGAAAACATCTTCAGCAA-GAGTCAGTGACAATGATG 1178 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 CTCTTCCACACCGTGTACACCGCCGCTCGCGGCGCTGCCGTTGAGGCGGCGGCGGCGGCG 830 consensus_4710#0 CTGCTCCAGCTTTCTTCCTCGTTATCCTTGCGACCTCCTCACCGCCGCTGTTGCGGATTT 1238 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 GCATCTTGGCGTTGATACGAAGGGTGTATCCGACTCATCGATCTTCCTCGCCGCGATCGG 890 consensus_4710#0 TGCAGCTTCTTCTCTTGAAACTGCCCTCGATTGAGAAGGCGGGAACATGGCCAGTACGAT 1298 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 ATCTACCTATCTATCTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTGGCGTTGGACG 950 consensus_4710#0 CTGACGACGCATGGGTACATCCTGACATGTGCACTTCTGCTTCATGACTGCTTTGCATAA 1358 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 AGAGATGTAGTGCTCGACTCGTCAG----------------------------------- 975 consensus_4710#0 CTGAGCATTTTCTCATTGAGAAGAGTTGTTGTGATCTTGCCCTCTTGCCTTGGCCTTCTT 1418 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 ------------------------------------------------------------ consensus_4710#0 CTGACGCTCTGTAACAATTCCATTGGTCATGCATGCTGATAATCTGTTGCAACAGCAGAA 1478 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 ------------------------------------------------------------ consensus_4710#0 AGTAAAATAAAAATCTTAGTTCTTACTTACTCCCCATGGGTTCTATTAATGGTTTCTGTT 1538 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 ------------------------------------------------------------ consensus_4710#0 CTTTTGGCCCATCTGCTGCACTTGTAACAAGAGGTAAAAGAACTTCAGTCGGAAAGTAGA 1598 consensus_4710#2 ------------------------------------------------------------ consensus_4710#1 ------------------------------------------------------------ consensus_4710#0 ATGAACTAGCGGATAAATCAAACTCTGTATGTAACTTCTCCATTTTTTAAGTTTTGTTT 1657 consensus_4710#2 ----------------------------------------------------------- consensus_4710#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||