These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1127 fasta sequence [CAGGAAGTACCAGGACTAGGTGGAGGTGGAACTAAAACCAAGGGAGTGCATCCCGTCCCTGACCTGTAACCATTATCAATCATGCTCGATGGGCAAGAGCACTGAAATCCTCCTGGAGTGTTGTTGCAGTACTGTGTGAAGGTGCAAGGGTTCTTTCCATGCATGGTCTTCCTCTTCCAGCTCCGGAAACAAGTAGGAGTATCTATATATCTGAAGGTGCAATGCAAATGTCTGAAAAGAAGGCGCTTACCTTGGCACCCGACATCCAGGTAAGGATTCCCTCAAAGCCCTGACGGCAATTGCAGAGACAGCCCTCTCCCCGAGCGAGTCGAAGCATTCGCCTTGCATTTATCCGGTGGAGCAAGCTTGCTGCTGCCTCTTGTTGCTTCCTCGCTGCCGTTGTTACCGATTGCCTAGTCTAAGCTCAGGTCGTGAGCTGCAGGAGTGGCTAGCGATGGCGTCTGAGC-TGCCC-TGG-CACGCGG-TGGCGCAGGTGG-TTATGCTTGCTG-CAGCCGACGG-CCATCAGCG-TGTTCCT-CCCGGAGAAGGCGAACGGCGT--CCCGGCAAGGT-CCATG-AGT-CCGGTTCCGTTGGCCTCTGTGCGGTTGCCGAAGGGGAGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGG-CAGGGTGTCGACCG-CCGCCGACGCTGCTGCAGGCGTCGACACGTTGCTCTATCGATGATCGACGGAGGCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCCGTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCCGTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTGGCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTACCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAAATTTGCTTTTCTGTAAGTTATTCTAGCCTGGCTTTGAACTCATCGAGACTTATTTACTCTGAGATCCAGTTGAGTTACATCGTCGAAGAGCTTATAAGTTATAAGCAATGCTCATACGTTTAAAAAAA] [+] EMBL AK108578 [CAGGAAGTACCAGGACTAGGTGGAGGTGGAACTAAAACCAAGGGAGTGCATCCCGTCCCTGACCTGTAACCATTATCAATCATGCTCGATGGGCAAGAGCACTGAAATCCTCCTGGAGTGTTGTTGCAGTACTGTGTGAAGGTGCAAGGGTTCTTTCCATGCATGGTCTTCCTCTTCCAGCTCCGGAAACAAGTAGGAGTATCTATATATCTGAAGGTGCAATGCAAATGTCTGAAAAGAAGGCGCTTACCTTGGCACCCGACATCCAGGTAAGGATTCCCTCAAAGCCCTGACGGCAATTGCAGAGACAGCCCTCTCCCCGAGCGAGTCGAAGCATTCGCCTTGCATTTATCCGGTGGAGCAAGCTTGCTGCTGCCTCTTGTTGCTTCCTCGCTGCCGTTGTTACCGATTGCCTAGTCTAAGCTCAGGTCGTGAGCTGCAGGAGTGGCTAGCGATGGCGTCTGAGC TGCCC TGG CACGCGG TGGCGCAGGTGG TTATGCTTGCTG CAGCCGACGG CCATCAGCG TGTTCCT CCCGGAGAAGGCGAACGGCGT CCCGGCAAGGT CCATG AGT CCGGTTCCGTTGGCCTCTGTGCGGTTGCCGAAGGGGAGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGG CAGGGTGTCGACCG CCGCCGACGCTGCTGCAGGCGTCGACACGTTGCTCTATCGATGATCGACGGAGGCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCCGTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCCGTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTGGCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTACCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAAATTTGCTTTTCTGTAAGTTATTCTAGCCTGGCTTTGAACTCATCGAGACTTATTTACTCTGAGATCCAGTTGAGTTACATCGTCGAAGAGCTTATAAGTTATAAGCAATGCTCATACG ] [+] EMBL AU057031 [ aAGCTTNCCCTTGGCCACCCGGTTGCCCCAGGTGGTTTATNCTTGCTGCCACCCAACGGCCCATCAGCGTTTTTCNTCCCCGGAGAAGGCGAACGGCCTTCCCCGGCAAGGTCCCATGAANTCCCGGTTCCGTTGNCCTCTGTGCGGTTGCCGAAGGGNAGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGGCCAGGGTGTCGACCGCCCGCCGACGCTGCTGCAGGCGTCGACACGTTGCTCTATCGATGATCGACGGAGGCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCCGTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCCGTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTGGCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTACCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAAATTTGCTTTTCTGTAAGTTATTCTAGCCTGGCTTTGAACTCATCGAGACTTATTTACTCTGAGATCCAGTTGAGTTACATCGTCGAAGAGCTTATAAGTTATAAGCAATGCTCATACGTTTAAAAAAA] consensusID : consensus_4711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [ATGCATGGTCTTCCTCTTCCAGCTCCGGAAACAAGTAGGAGTATCTATATATCTGAAGGTGCAATGCAAATGTCTGAAAAGAAGGCGCTTACCTTGGCACCCGACATCCAGGAGTGGCTAGCGATGGCGTCTGAGCTGCCCTGGCACGCGGTGGCGCAGGTGGTTATGCTTGCTGCAGCCGACGGCCATCAGCGTGTTCCTCCCGGAGAAGGCGAACGGCGTCCCGGCAAGGTCCATGAGTCCGGTTCCGTTGGCCTCTGTGCGGTTGCCGAAGGGAGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGGCAGGGTGTCGACCGCCGCCGACGCTGCTGCAGGCGTTCGACACGTTGCTCTATCGATGATCGACGGAGGCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCCGTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCCGTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTGGCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTACCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAATTTGCTTTTCTGTAAGTTATTCTAGC] [+] EMBL AU057030 [ATGCATGGTCTTCCTCTTCCAGCTCCGGAAACAAGTAGGAGTATCTATATATCTGAAGGTGCAATGCAAATGTCTGAAAAGAAGGCGCTTACCTTGGCACCCGACATCCAGGAGTGGCTAGCGATGGCGTCTGAGCTGCCCTGGCACGCGGTGGCGCAGGTGGTTATGCTTGCTGCAGCCGACGGCCATCAGCGTGTTCCTCCCGGAGAAGGCGAACGGCGTCCCGGCAAGGTCCATGAGTCCGGTTCCGTTGGCCTCTGTGCGGTTGCCGAAGGGAGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGGCAGGGTGTCGACCGCCGCCGACGCTGCTGCAGGCGTTCGACACGTTGCTCTATCGATGATCGACGGAGGCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCCGTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCCGTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTGGCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTACCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAATTTGCTTTTCTGTAAGTTATTCTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4711#0 CAGGAAGTACCAGGACTAGGTGGAGGTGGAACTAAAACCAAGGGAGTGCATCCCGTCCCT 60 consensus_4711#1 ------------------------------------------------------------ consensus_4711#0 GACCTGTAACCATTATCAATCATGCTCGATGGGCAAGAGCACTGAAATCCTCCTGGAGTG 120 consensus_4711#1 ------------------------------------------------------------ consensus_4711#0 TTGTTGCAGTACTGTGTGAAGGTGCAAGGGTTCTTTCCATGCATGGTCTTCCTCTTCCAG 180 consensus_4711#1 ------------------------------------------------------------ consensus_4711#0 CTCCGGAAACAAGTAGGAGTATCTATATATCTGAAGGTGCAATGCAAATGTCTGAAAAGA 240 consensus_4711#1 ------------------------------------------------------------ consensus_4711#0 AGGCGCTTACCTTGGCACCCGACATCCAGGTAAGGATTCCCTCAAAGCCCTGACGGCAAT 300 consensus_4711#1 ------------------------------------------------------------ consensus_4711#0 TGCAGAGACAGCCCTCTCCCCGAGCGAGTCGAAGCATTCGCCTTGCATTTATCCGGTGGA 360 consensus_4711#1 --------------------------ATGCATGGTCTTCCTCTTCCAGCTCCGGAAACAA 34 * * * *** *** ** * * consensus_4711#0 GCAAGCTTGCTGCTGCCTCTTGTTGCTTCCTCGCTGCCGTTGTTACCGATTGCCTAGTCT 420 consensus_4711#1 GTAGGAGTATCTATATATCT-GAAGGTGCAATGCAAATGTCTGAAAAGAAGGC----GCT 89 * * * * * *** * * * * ** ** * ** ** ** consensus_4711#0 AAGCTCAGGTCGTGAGCTGCAGGAGTGGCTAGCGATGGCGTCTGAGCTGCCCTGGCACGC 480 consensus_4711#1 TACCTTGGCACCCGACATCCAGGAGTGGCTAGCGATGGCGTCTGAGCTGCCCTGGCACGC 149 * ** * * ** * ***************************************** consensus_4711#0 GGTGGCGCAGGTGGTTATGCTTGCTGCAGCCGACGGCCATCAGCGTGTTCCTCCCGGAGA 540 consensus_4711#1 GGTGGCGCAGGTGGTTATGCTTGCTGCAGCCGACGGCCATCAGCGTGTTCCTCCCGGAGA 209 ************************************************************ consensus_4711#0 AGGCGAACGGCGTCCCGGCAAGGTCCATGAGTCCGGTTCCGTTGGCCTCTGTGCGGTTGC 600 consensus_4711#1 AGGCGAACGGCGTCCCGGCAAGGTCCATGAGTCCGGTTCCGTTGGCCTCTGTGCGGTTGC 269 ************************************************************ consensus_4711#0 CGAAGGGGAGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGGCAGGGTGT 660 consensus_4711#1 CGAAGGG-AGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGGCAGGGTGT 328 ******* **************************************************** consensus_4711#0 CGACCGCCGCCGACGCTGCTGCAGGCGT-CGACACGTTGCTCTATCGATGATCGACGGAG 719 consensus_4711#1 CGACCGCCGCCGACGCTGCTGCAGGCGTTCGACACGTTGCTCTATCGATGATCGACGGAG 388 **************************** ******************************* consensus_4711#0 GCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCC 779 consensus_4711#1 GCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCC 448 ************************************************************ consensus_4711#0 GTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCC 839 consensus_4711#1 GTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCC 508 ************************************************************ consensus_4711#0 GTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTG 899 consensus_4711#1 GTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTG 568 ************************************************************ consensus_4711#0 GCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTA 959 consensus_4711#1 GCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTA 628 ************************************************************ consensus_4711#0 CCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAAATTTGCTTTTCTGTAAGTTA 1019 consensus_4711#1 CCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAA-TTTGCTTTTCTGTAAGTTA 687 **************************************** ******************* consensus_4711#0 TTCTAGCCTGGCTTTGAACTCATCGAGACTTATTTACTCTGAGATCCAGTTGAGTTACAT 1079 consensus_4711#1 TTCTAGC----------------------------------------------------- 694 ******* consensus_4711#0 CGTCGAAGAGCTTATAAGTTATAAGCAATGCTCATACGTTTAAAAAAA 1127 consensus_4711#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||