These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1389 fasta sequence [CCACTCCACTCACTGGAACTGGAAGCTTACGAGTGTTCGTCCAATGCCACGGCGTGCCGCTCTCGCCATGATGAACGTGGTGGCCATCGGGCTCGTGCTCTCCACCCTGGCCGCGGCCGGCGTGTGGTCGCCGGCGCCGACGCCACCGCCGTCCACGGCCGGCGAGCACGTCGTCCGGGAGGGACGCCGCGTGGTCATCGTCGAGTACGAGCGGGAGCACCCGCTGTACCCCGGCGACGCCGTGAAGGAGACGCACGTCCTGCCCCCTGACTCCCTCGACGGCGGCGAGGGCAGGCTCACGGACAAGGCCAGGGGCGCAGTCTCCGACGCGGCCGACAGGGTGGCCGACGCGGCGGAGGGCGGCAAGGAGAAGATGTCCGACGCCAAGGAGAGCGCGACGGGGAAGGTGTTCGGCGCGGTGAAGCGGTGCAAGGACAGGCTCTGCGGCGCGGCCAGGGAGGCGGAGGAGGGCGCGAAGGACAAGGCGTCGGCAGGCGAGCATGGTGCAGAGCAAGCTGTTCCCGATGTACTTCCGCGCCGTGGCGTACGGCGTCGGCCTCGCGCTCGCGGCGCACCTGCTCGGCCGCGAGCGCAGCTCCCTCGCCGCGCGCGCCCAGAGCGTCAACCTCCTCGCCGCGCTCGCCCTGGTCCTCGCCAACATGCTGCTCCTGGAGCCAAAAGCCACCAAAGTGATGTTCGAGAGGATGAAGGTGGAGAAGGAGGAAGGCAGGGGGAGGGACATGGCCGACATCGTCGACCCGCCAACGGTCACCGTCGCGGCGGGCAACACGGCCACCACCACCACCGTTCCCACGGCGGCGGCGCGCAAGCCGGCAGGCAACAACAATATGGCGGCGAAGTCGGCGGCGGCGGCGGCGCCGGTGGACGAGCAGACGTCCAAGAGCCGGGTGGCGACGCTGAACCAGCGGCTCAAGAAGCTGAACGGCTACTCGTCTCTGTGCAACGTGCTGTGCCTGATGGCGCTGACGTGGCACCTCGTGCACCTGGCACGTCGCCTCCAGATAGCCAGCGTCTGCTAGGCTCAAAACTCTTCGTCGTCCGTGTCGTTTGCTGTGAATCTGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTCTGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGTAGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAGCTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAATGTAACTGGAAACCCCTAATCTGTTTTATCACGCGCGATCGATCGTTGCATCGACCGTTCATAAAAAAA] [+] EMBL AK063725 [CCACTCCACTCACTGGAACTGGAAGCTTACGAGTGTTCGTCCAATGCCACGGCGTGCCGCTCTCGCCATGATGAACGTGGTGGCCATCGGGCTCGTGCTCTCCACCCTGGCCGCGGCCGGCGTGTGGTCGCCGGCGCCGACGCCACCGCCGTCCACGGCCGGCGAGCACGTCGTCCGGGAGGGACGCCGCGTGGTCATCGTCGAGTACGAGCGGGAGCACCCGCTGTACCCCGGCGACGCCGTGAAGGAGACGCACGTCCTGCCCCCTGACTCCCTCGACGGCGGCGAGGGCAGGCTCACGGACAAGGCCAGGGGCGCAGTCTCCGACGCGGCCGACAGGGTGGCCGACGCGGCGGAGGGCGGCAAGGAGAAGATGTCCGACGCCAAGGAGAGCGCGACGGGGAAGGTGTTCGGCGCGGTGAAGCGGTGCAAGGACAGGCTCTGCGGCGCGGCCAGGGAGGCGGAGGAGGGCGCGAAGGACAAGGCGTCGGCAGGCGAGCATGGTGCAGAGCAAGCTGTTCCCGATGTACTTCCGCGCCGTGGCGTACGGCGTCGGCCTCGCGCTCGCGGCGCACCTGCTCGGCCGCGAGCGCAGCTCCCTCGCCGCGCGCGCCCAGAGCGTCAACCTCCTCGCCGCGCTCGCCCTGGTCCTCGCCAACATGCTGCTCCTGGAGCCAAAAGCCACCAAAGTGATGTTCGAGAGGATGAAGGTGGAGAAGGAGGAAGGCAGGGGGAGGGACATGGCCGACATCGTCGACCCGCCAACGGTCACCGTCGCGGCGGGCAACACGGCCACCACCACCACCGTTCCCACGGCGGCGGCGCGCAAGCCGGCAGGCAACAACAATATGGCGGCGAAGTCGGCGGCGGCGGCGGCGCCGGTGGACGAGCAGACGTCCAAGAGCCGGGTGGCGACGCTGAACCAGCGGCTCAAGAAGCTGAACGGCTACTCGTCTCTGTGCAACGTGCTGTGCCTGATGGCGCTGACGTGGCACCTCGTGCACCTGGCACGTCGCCTCCAGATAGCCAGCGTCTGCTAGGCTCAAAACTCTTCGTCGTCCGTGTCGTTTGCTGTGAATCTGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTCTGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGTAGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAGCTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAATGTAACTGGAAACCCCT ] [+] EMBL CF315884 [ AGCCAGCGTCTGCTAGGCTCAAAACTCTTCGTCGTCCGTGTCGTTTGCTGTGAATTTGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTCTGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGTAGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAGCTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAATGTAACTGGAAACCCCTAATCTGTTTTATCACGCGCGATCGATCGTTGCATCGACCGTTCATAAAAAAA] consensusID : consensus_4719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [GCCAGCGTCTGCTAGGCTCAAAACTTTTCGTCGTCCGTGTCGTTTGCTGTGAATTTGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTCTGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGTAGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAGCTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAATGTAACTGGAAACCCATAATATGTTTAATCACGAAAAATAAAAAAAAAAAAAAACAAATAAAAAAAAAAA] [-] EMBL CF315883 [GCCAGCGTCTGCTAGGCTCAAAACTTTTCGTCGTCCGTGTCGTTTGCTGTGAATTTGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTCTGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGTAGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAGCTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAATGTAACTGGAAACCCATAATATGTTTAATCACGAAAAATAAAAAAAAAAAAAAACAAATAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4719#0 CCACTCCACTCACTGGAACTGGAAGCTTACGAGTGTTCGTCCAATGCCACGGCGTGCCGC 60 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 TCTCGCCATGATGAACGTGGTGGCCATCGGGCTCGTGCTCTCCACCCTGGCCGCGGCCGG 120 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 CGTGTGGTCGCCGGCGCCGACGCCACCGCCGTCCACGGCCGGCGAGCACGTCGTCCGGGA 180 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 GGGACGCCGCGTGGTCATCGTCGAGTACGAGCGGGAGCACCCGCTGTACCCCGGCGACGC 240 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 CGTGAAGGAGACGCACGTCCTGCCCCCTGACTCCCTCGACGGCGGCGAGGGCAGGCTCAC 300 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 GGACAAGGCCAGGGGCGCAGTCTCCGACGCGGCCGACAGGGTGGCCGACGCGGCGGAGGG 360 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 CGGCAAGGAGAAGATGTCCGACGCCAAGGAGAGCGCGACGGGGAAGGTGTTCGGCGCGGT 420 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 GAAGCGGTGCAAGGACAGGCTCTGCGGCGCGGCCAGGGAGGCGGAGGAGGGCGCGAAGGA 480 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 CAAGGCGTCGGCAGGCGAGCATGGTGCAGAGCAAGCTGTTCCCGATGTACTTCCGCGCCG 540 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 TGGCGTACGGCGTCGGCCTCGCGCTCGCGGCGCACCTGCTCGGCCGCGAGCGCAGCTCCC 600 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 TCGCCGCGCGCGCCCAGAGCGTCAACCTCCTCGCCGCGCTCGCCCTGGTCCTCGCCAACA 660 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 TGCTGCTCCTGGAGCCAAAAGCCACCAAAGTGATGTTCGAGAGGATGAAGGTGGAGAAGG 720 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 AGGAAGGCAGGGGGAGGGACATGGCCGACATCGTCGACCCGCCAACGGTCACCGTCGCGG 780 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 CGGGCAACACGGCCACCACCACCACCGTTCCCACGGCGGCGGCGCGCAAGCCGGCAGGCA 840 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 ACAACAATATGGCGGCGAAGTCGGCGGCGGCGGCGGCGCCGGTGGACGAGCAGACGTCCA 900 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 AGAGCCGGGTGGCGACGCTGAACCAGCGGCTCAAGAAGCTGAACGGCTACTCGTCTCTGT 960 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 GCAACGTGCTGTGCCTGATGGCGCTGACGTGGCACCTCGTGCACCTGGCACGTCGCCTCC 1020 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 AGATAGCCAGCGTCTGCTAGGCTCAAAACTCTTCGTCGTCCGTGTCGTTTGCTGTGAATC 1080 consensus_4719#1 -----GCCAGCGTCTGCTAGGCTCAAAACTTTTCGTCGTCCGTGTCGTTTGCTGTGAATT 55 ************************* **************************** consensus_4719#0 TGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTC 1140 consensus_4719#1 TGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTC 115 ************************************************************ consensus_4719#0 TGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGT 1200 consensus_4719#1 TGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGT 175 ************************************************************ consensus_4719#0 AGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAG 1260 consensus_4719#1 AGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAG 235 ************************************************************ consensus_4719#0 CTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAA 1320 consensus_4719#1 CTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAA 295 ************************************************************ consensus_4719#0 TGTAACTGGAAACCCCTAATCTGTTTTATCACGCGCGATCGATCGTTGCATCGACCGTTC 1380 consensus_4719#1 TGTAACTGGAAACCCATAATATGTTTAATCACGAAAAATAAAAAAAAAAAAAAACAAATA 355 *************** **** ***** ****** ** * * ** * consensus_4719#0 ATAAAAAAA- 1389 consensus_4719#1 AAAAAAAAAA 365 * ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||