cluster # 4740

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Oryza sativa
cluster # 4740 cluster # 4740 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4740#0 length = 641 sequences # 1

consensus_4740#1 length = 594 sequences # 1
consensus_4740#2 length = 215 sequences # 1

consensusID : consensus_4740#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence

                              [CAAAGCAAGCCAAGAAAAAACAAGAAGCAAAAAAATCCCAAAGCAATCTAGCTAGCTAAATAACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTAGCTTAGCTTAGAGAGCAAATTAAGATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAGGGAGGAGCAGGAGGAGGAGGCAGTACTGCTGCTCCGGCCACGGCCGCCGCCGCCGGCGGCATCGGCGGCGGCGGTGCCGGCGAGGTGGCGGTGCAGAAGGTGTACCACAACCTGGCACCCAAGCCGACCTTCAGGAAGATCGACAGCATCAAAGAGGACATCAACAAGAAGGCTGACAGGTTCATCAAGATGACCAGGGCAAGGTTGTTCAACCAGACCAAGTCCTTCCGGCAGCCGGCCGGCTCGCCGCCGGCGACGGCGGCCGGCCGTGATGGGAAACTCTTCTGATCGATCGATCCACTCGCCGTATATGCCGCCACTGCAAATAAGGAGCTTAATTATTTAATATCTACTTAATTATGTGATATATAGCCATGTTATCATGATCCAGGTAGAACTGATGATGAACTTTATAGATGGCGGTGCATGTATTAATTATTTGTCCTACTTAGGACGACGTGATGATGATTATTTATGGACTAAA]

[+] EMBL AK071647             [CAAAGCAAGCCAAGAAAAAACAAGAAGCAAAAAAATCCCAAAGCAATCTAGCTAGCTAAATAACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTAGCTTAGCTTAGAGAGCAAATTAAGATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAGGGAGGAGCAGGAGGAGGAGGCAGTACTGCTGCTCCGGCCACGGCCGCCGCCGCCGGCGGCATCGGCGGCGGCGGTGCCGGCGAGGTGGCGGTGCAGAAGGTGTACCACAACCTGGCACCCAAGCCGACCTTCAGGAAGATCGACAGCATCAAAGAGGACATCAACAAGAAGGCTGACAGGTTCATCAAGATGACCAGGGCAAGGTTGTTCAACCAGACCAAGTCCTTCCGGCAGCCGGCCGGCTCGCCGCCGGCGACGGCGGCCGGCCGTGATGGGAAACTCTTCTGATCGATCGATCCACTCGCCGTATATGCCGCCACTGCAAATAAGGAGCTTAATTATTTAATATCTACTTAATTATGTGATATATAGCCATGTTATCATGATCCAGGTAGAACTGATGATGAACTTTATAGATGGCGGTGCATGTATTAATTATTTGTCCTACTTAGGACGACGTGATGATGATTATTTATGGACTAAA]




>consensus_4740#0
CAAAGCAAGCCAAGAAAAAACAAGAAGCAAAAAAATCCCAAAGCAATCTAGCTAGCTAAA
TAACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTAGCTTAGCTTAGAGAGCAAATTAA
GATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAGGGAGGAGCAGGAGGAGGAGGCAG
TACTGCTGCTCCGGCCACGGCCGCCGCCGCCGGCGGCATCGGCGGCGGCGGTGCCGGCGA
GGTGGCGGTGCAGAAGGTGTACCACAACCTGGCACCCAAGCCGACCTTCAGGAAGATCGA
CAGCATCAAAGAGGACATCAACAAGAAGGCTGACAGGTTCATCAAGATGACCAGGGCAAG
GTTGTTCAACCAGACCAAGTCCTTCCGGCAGCCGGCCGGCTCGCCGCCGGCGACGGCGGC
CGGCCGTGATGGGAAACTCTTCTGATCGATCGATCCACTCGCCGTATATGCCGCCACTGC
AAATAAGGAGCTTAATTATTTAATATCTACTTAATTATGTGATATATAGCCATGTTATCA
TGATCCAGGTAGAACTGATGATGAACTTTATAGATGGCGGTGCATGTATTAATTATTTGT
CCTACTTAGGACGACGTGATGATGATTATTTATGGACTAAA

consensusID : consensus_4740#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [CAGGAATTCGGCACGAGTAAAAAACAGAGCAAAAAAATCCCAAAGCAATCTAGCTAGCTAAATGACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTAGCTTAGCTTAGAGAGCAAATTAAGATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAGGGAGGAGCAGGAGGAGGAGGCAGTACTGCTGCTCCGGCCACCGCCGCCGCCGNCGGCGGNATCGGCGGCGGCGGTGCCGGCGAGGTGGCGGTGCANAAGGTGTACCACAACCTGGCACCCAAGCCGACCTTCAGGAAGATCGACAGCATCAAAGAGGACATCAACAAGAAGGCTGACAGGTTCATCAAAGATGACCAGGGCAAGGTTGTTCAACCAGACCAAGTCCTTTCCCGCAGCTCGGCCGGCTCGCCGCCGTCAACTGCGGCCGGCCTCGATGGGAAACTTTTCTGATCTGATCGACCCACTCTGCCCGTTTTTCCCGCTCCCTGTATATCCAACGCGCTTCAAATATTCAAACAATCTACTTCAATCATCGCGCATTTCCAGCCCACGCCCTCATTGACCCATGTCTACACTGTCTATCGCACTTCTTCG]

[+] EMBL CA756506             [CAGGAATTCGGCACGAGTAAAAAACAGAGCAAAAAAATCCCAAAGCAATCTAGCTAGCTAAATGACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTAGCTTAGCTTAGAGAGCAAATTAAGATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAGGGAGGAGCAGGAGGAGGAGGCAGTACTGCTGCTCCGGCCACCGCCGCCGCCGNCGGCGGNATCGGCGGCGGCGGTGCCGGCGAGGTGGCGGTGCANAAGGTGTACCACAACCTGGCACCCAAGCCGACCTTCAGGAAGATCGACAGCATCAAAGAGGACATCAACAAGAAGGCTGACAGGTTCATCAAAGATGACCAGGGCAAGGTTGTTCAACCAGACCAAGTCCTTTCCCGCAGCTCGGCCGGCTCGCCGCCGTCAACTGCGGCCGGCCTCGATGGGAAACTTTTCTGATCTGATCGACCCACTCTGCCCGTTTTTCCCGCTCCCTGTATATCCAACGCGCTTCAAATATTCAAACAATCTACTTCAATCATCGCGCATTTCCAGCCCACGCCCTCATTGACCCATGTCTACACTGTCTATCGCACTTCTTCG]




>consensus_4740#1
CAGGAATTCGGCACGAGTAAAAAACAGAGCAAAAAAATCCCAAAGCAATCTAGCTAGCTA
AATGACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTAGCTTAGCTTAGAGAGCAAATT
AAGATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAGGGAGGAGCAGGAGGAGGAGGC
AGTACTGCTGCTCCGGCCACCGCCGCCGCCGNCGGCGGNATCGGCGGCGGCGGTGCCGGC
GAGGTGGCGGTGCANAAGGTGTACCACAACCTGGCACCCAAGCCGACCTTCAGGAAGATC
GACAGCATCAAAGAGGACATCAACAAGAAGGCTGACAGGTTCATCAAAGATGACCAGGGC
AAGGTTGTTCAACCAGACCAAGTCCTTTCCCGCAGCTCGGCCGGCTCGCCGCCGTCAACT
GCGGCCGGCCTCGATGGGAAACTTTTCTGATCTGATCGACCCACTCTGCCCGTTTTTCCC
GCTCCCTGTATATCCAACGCGCTTCAAATATTCAAACAATCTACTTCAATCATCGCGCAT
TTCCAGCCCACGCCCTCATTGACCCATGTCTACACTGTCTATCGCACTTCTTCG

consensusID : consensus_4740#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence

                              [GCCGGCCGATGATGGGAAACTCATTCTGAATCGATCGATCCATCTCGCCGTATATGCCGCCAGCTGCAAATAAGGAGCCTTAATTAGTTTAATATTCATACCTTAACTTATTGTGAATATAATAGCCATGTTATCATGATCCAGGTAGAACTGATGATGAACTCTTATAGATGGCGGTGCATGTATAATTATTTGTCCTACTTAGGAGCGACGTG]

[+] EMBL BI808645             [GCCGGCCGATGATGGGAAACTCATTCTGAATCGATCGATCCATCTCGCCGTATATGCCGCCAGCTGCAAATAAGGAGCCTTAATTAGTTTAATATTCATACCTTAACTTATTGTGAATATAATAGCCATGTTATCATGATCCAGGTAGAACTGATGATGAACTCTTATAGATGGCGGTGCATGTATAATTATTTGTCCTACTTAGGAGCGACGTG]




>consensus_4740#2
GCCGGCCGATGATGGGAAACTCATTCTGAATCGATCGATCCATCTCGCCGTATATGCCGC
CAGCTGCAAATAAGGAGCCTTAATTAGTTTAATATTCATACCTTAACTTATTGTGAATAT
AATAGCCATGTTATCATGATCCAGGTAGAACTGATGATGAACTCTTATAGATGGCGGTGC
ATGTATAATTATTTGTCCTACTTAGGAGCGACGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4740#0      CAAAGCAAGCCAAGAAAAAACAAGAAGCAAAAAAATCCCAAAGCAATCTAGCTAGCTAAA 60
consensus_4740#2      ------------------------------------------------------------
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      TAACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTAGCTTAGCTTAGAGAGCAAATTAA 120
consensus_4740#2      ------------------------------------------------------------
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      GATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAGGGAGGAGCAGGAGGAGGAGGCAG 180
consensus_4740#2      ------------------------------------------------------------
consensus_4740#1      ---------------------CAGGAATTCGGCACGAGTAAAAAACAGAGCAAAAAAATC 39
                                                                                  

consensus_4740#0      TACTGCTGCTCCGGCCACGGCCGCCGCCGCCGGCGGCATCGGCGGCGGCGGTGCCGGCGA 240
consensus_4740#2      ------------------------------------------------------------
consensus_4740#1      CCAAAGCAATCTAGCTAGCTAAATGACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTA 99
                                                                                  

consensus_4740#0      GGTGGCGGTGCAGAAGGTGTACCACAACCTGGCACCCAAGCCGACCTTCAGGAAGATCGA 300
consensus_4740#2      ------------------------------------------------------------
consensus_4740#1      GCTTAGCTTAGAGAGCAAATTAAGATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAG 159
                                                                                  

consensus_4740#0      CAGCATCAAAGAGGACATCAACAAGAAGGCTGACAGGTTCATCAAGATGACCAGGGCAAG 360
consensus_4740#2      ------------------------------------------------------------
consensus_4740#1      GGAGGAGCAGGAGGAGGAGGCAGTACTGCTGCTCCGGCCACCGCCGCCGCCGNCGGCGGN 219
                                                                                  

consensus_4740#0      GTTGTTCAACCAGACCAAGTCCTTCCGGCAGCCGGCCGGCTCGCCGCCGGCGACGGCGGC 420
consensus_4740#2      ----------------------------------------------------------GC 2
consensus_4740#1      ATCGGCGGCGGCGGTGCCGGCGAGGTGGCGGTGCANAAGGTGTACCACAACCTGGCACCC 279
                                                                                 *

consensus_4740#0      CGGCCG-TGATGGGAAACTC-TTCTGA-TCGATCGATCCA-CTCGCCGTATATGCCGCCA 476
consensus_4740#2      CGGCCGATGATGGGAAACTCATTCTGAATCGATCGATCCATCTCGCCGTATATGCCGCCA 62
consensus_4740#1      AAGCCGACCTTCAGGAAGATCGACAGCATCAAAGAGGACA--TCAACAAGAAGGCTGACA 337
                        ****    *  * **      * *  ** *      **  **  *    * ** * **

consensus_4740#0      -CTGCAAATAAGGAGC-TTAATTA---TTTAATATCTA---CTTAATTA--TGTG-A-TA 524
consensus_4740#2      GCTGCAAATAAGGAGCCTTAATTAG--TTTAATATTCATACCTTAACTTATTGTG-AATA 119
consensus_4740#1      GGTTCATCAAAGATGACCAGGGCAAGGTTGTTCAACCAGACCAAGTCCTTTCCCGCAGCT 397
                        * **   ***  *        *   **    *   *   *            * *   

consensus_4740#0      TA-TAGCCATGTTATCATGATC--CAGGTAGAACTGATGATGAACT-TTATAGATGGCGG 580
consensus_4740#2      TAATAGCCATGTTATCATGATC--CAGGTAGAACTGATGATGAACTCTTATAGATGGCGG 177
consensus_4740#1      CGGCCGGCTCGCCGCCGTCAACTGCGGCCGGCCTCGATGGGAAACTTTTCTGATCTGATC 457
                           * *  *    * * * *  * *   *    ****   **** ** *     *   

consensus_4740#0      TGCATGTATTAATTATTTGTCCTACT-----TAGGA-CGACGTGATGATGATTATTTATG 634
consensus_4740#2      TGCATGTAT-AATTATTTGTCCTACT-----TAGGAGCGACGTG---------------- 215
consensus_4740#1      GACCCACTCTGCCCGTTTTTCCCGCTCCCTGTATATCCAACGCGCTTCAAATATTCAAAC 517
                        *            *** ***  **     **    * *** *                

consensus_4740#0      GACTAAA----------------------------------------------------- 641
consensus_4740#2      ------------------------------------------------------------
consensus_4740#1      AATCTACTTCAATCATCGCGCATTTCCAGCCCACGCCCTCATTGACCCATGTCTACACTG 577
                                                                                  

consensus_4740#0      -----------------
consensus_4740#2      -----------------
consensus_4740#1      TCTATCGCACTTCTTCG 594