These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1154 fasta sequence [CATCGCCGCATAGAAATTCCACCGAACACATAGCGAGCAAGAAGAGGAGGAGGAGGAGAAGCGAAGGAGACAAGGAAACAGCGCGACATGCCGTGCATCCCGGCGTCCAGCCCTGGCATCCCGCACCAGCACCAGCACCAGCACCACCGGGCGCTAGCAGGCGTCGGCATGGCGGTCGGGTGCGCGGCGGAGGCGGCCGTGGCCGCGGCGGGTGTCGCGGGGACGAGGTGCGGGGCGCACGACGGGGAGGTGCCTATGGAGGTGGCGCGGCACCACGAGCACGCGGAGCCAGGGTCGGGGCGGTGCTGCTCCGCGGTGGTCCAGCACGTAGCGGCGCCGGCGGCGGCGGTGTGGTCGGTGGTGCGGCGGTTCGACCAGCCCCAGGCGTACAAGCGGTTCGTCCGCAGCTGCGCGCTGCTCGCCGGGGACGGCGGCGTGGGCACGCTCCGCGAGGTGCGCGTCGTGTCGGGCCTCCCCGCGGCGTCCTCCCGCGAGCGCCTCGAGATCCTCGACGACGAGAGCCACGTCCTCAGCTTCCGCGTCGTCGGCGGCGAGCACCGCCTCAAGAACTACCTCTCGGTCACCACCGTCCACCCGTCCCCGTCCGCGCCGACGGTCGCCACCGTCGTGGTGGAGTCCTACGTCGTCGACGTGCCCCCGGGCAACACGCCCGAGGACACCCGCGTGTTCGTCGACACCATCGTCAAGTGCAACCTCCAGTCTCTCGCCAAGACCGCCGAGAAGCTCGCCGCCGGCGCGAGGGCCGCCGGCTCGTGAGCGCTCTCCACCGCCGGGCCACCGATCGTTTTTTTCCGGGCGGATGGATGTGTGTTTCTTCGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCCCTCTGGTTTCTTCACATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAGACACACAAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTGTACGTTCGTATTTAAAGTTGTGCTACA] [+] EMBL AK108414 [CATCGCCGCATAGAAATTCCACCGAACACATAGCGAGCAAGAAGAGGAGGAGGAGGAGAAGCGAAGGAGACAAGGAAACAGCGCGACATGCCGTGCATCCCGGCGTCCAGCCCTGGCATCCCGCACCAGCACCAGCACCAGCACCACCGGGCGCTAGCAGGCGTCGGCATGGCGGTCGGGTGCGCGGCGGAGGCGGCCGTGGCCGCGGCGGGTGTCGCGGGGACGAGGTGCGGGGCGCACGACGGGGAGGTGCCTATGGAGGTGGCGCGGCACCACGAGCACGCGGAGCCAGGGTCGGGGCGGTGCTGCTCCGCGGTGGTCCAGCACGTAGCGGCGCCGGCGGCGGCGGTGTGGTCGGTGGTGCGGCGGTTCGACCAGCCCCAGGCGTACAAGCGGTTCGTCCGCAGCTGCGCGCTGCTCGCCGGGGACGGCGGCGTGGGCACGCTCCGCGAGGTGCGCGTCGTGTCGGGCCTCCCCGCGGCGTCCTCCCGCGAGCGCCTCGAGATCCTCGACGACGAGAGCCACGTCCTCAGCTTCCGCGTCGTCGGCGGCGAGCACCGCCTCAAGAACTACCTCTCGGTCACCACCGTCCACCCGTCCCCGTCCGCGCCGACGGTCGCCACCGTCGTGGTGGAGTCCTACGTCGTCGACGTGCCCCCGGGCAACACGCCCGAGGACACCCGCGTGTTCGTCGACACCATCGTCAAGTGCAACCTCCAGTCTCTCGCCAAGACCGCCGAGAAGCTCGCCGCCGGCGCGAGGGCCGCCGGCTCGTGAGCGCTCTCCACCGCCGGGCCACCGATCGTTTTTTTCCGGGCGGATGGATGTGTGTTTCTTCGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCCCTCTGGTTTCTTCACATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAGACACACAAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTGTACGTTCGTATTTAAAGTTGTGCTACA] consensusID : consensus_4743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [GGAGGGNCANTCTNTTCGTTTNTGGGGGGCGCTCAGATACTTGGTACNCGTCAACCGTCCCNTCGGGCGGNGGCGCCACCGNTGNGGGGGGNTCTAATTTTTTGNAGGGCCCCGGGGCAAAAAGCCGGGGGAAAACGGGTGTTTGTTGAACACATTGTTCANGNGCAAACCTCCAGTTTTTTTGCCAAGGGNCGCCGGNGAAGTTCCCCGCCGGGCGNGAGGGCCGCCGGGTTNGTGAGCGNTTTTCCACCGCGGGGCCACCGATCGTTTTTTTTCCGGGGCGGGATGGATGTGTGTTTCTTTCGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCTCTTTGGTTTCTTCAACATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAGACACACAAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTGTACGTTCGT] [-] EMBL BE229049 [GGAGGGNCANTCTNTTCGTTTNTGGGGGGCGCTCAGATACTTGGTACNCGTCAACCGTCCCNTCGGGCGGNGGCGCCACCGNTGNGGGGGGNTCTAATTTTTTGNAGGGCCCCGGGGCAAAAAGCCGGGGGAAAACGGGTGTTTGTTGAACACATTGTTCANGNGCAAACCTCCAGTTTTTTTGCCAAGGGNCGCCGGNGAAGTTCCCCGCCGGGCGNGAGGGCCGCCGGGTTNGTGAGCGNTTTTCCACCGCGGGGCCACCGATCGTTTTTTTTCCGGGGCGGGATGGATGTGTGTTTCTTTCGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCTCTTTGGTTTCTTCAACATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAGACACACAAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTGTACGTTCGT] consensusID : consensus_4743#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence [ATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCCGTTCTCTGGCNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF329566 [ATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCCGTTCTCTGGCNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4743#0 CATCGCCGCATAGAAATTCCACCGAACACATAGCGAGCAAGAAGAGGAGGAGGAGGAGAA 60 consensus_4743#1 ------------------------------------------------------------ consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 GCGAAGGAGACAAGGAAACAGCGCGACATGCCGTGCATCCCGGCGTCCAGCCCTGGCATC 120 consensus_4743#1 ------------------------------------------------------------ consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 CCGCACCAGCACCAGCACCAGCACCACCGGGCGCTAGCAGGCGTCGGCATGGCGGTCGGG 180 consensus_4743#1 ------------------------------------------------------------ consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 TGCGCGGCGGAGGCGGCCGTGGCCGCGGCGGGTGTCGCGGGGACGAGGTGCGGGGCGCAC 240 consensus_4743#1 ------------------------------------------------------------ consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 GACGGGGAGGTGCCTATGGAGGTGGCGCGGCACCACGAGCACGCGGAGCCAGGGTCGGGG 300 consensus_4743#1 ------------------------------------------------------------ consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 CGGTGCTGCTCCGCGGTGGTCCAGCACGTAGCGGCGCCGGCGGCGGCGGTGTGGTCGGTG 360 consensus_4743#1 ------------------------------------------------------------ consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 GTGCGGCGGTTCGACCAGCCCCAGGCGTACAAGCGGTTCGTCCGCAGCTGCGCGCTGCTC 420 consensus_4743#1 ------------------------------------------------------------ consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 GCCGGGGACGGCGGCGTGGGCACGCTCCGCGAGGTGCGCGTCGTGTCGGGCCTCCCCGCG 480 consensus_4743#1 ------------------------------------------------------------ consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 GCGTCCTCCCGCGAGCGCCTCGAGATCCTCGACGACGAGAGCCACGTCCTCAGCTTCCGC 540 consensus_4743#1 -----------------------------------GGAGGGNCANTCTNTTCGTTTNTG- 24 consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 GTCGTCGGCGGCGAGCACCGCCTCAAGAACTACCTCTCGGTCACCACCGTCCACCCGTCC 600 consensus_4743#1 ------GGGGGCG--------CTCAGATACTTGGTACNCGTCA--ACCGTCCCNTCG--- 65 consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 CCGTCCGCGCCGACGGTCGCCACCGTCGTGGTGGAGTCCTACGTCGTCGACGTGCCCCCG 660 consensus_4743#1 --------GGCGGNGG-CGCCACCGNTGNGG-GGGGNTCTAATTTTTTGNAGGGCCCCGG 115 consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 GGCAACACGCCCGAGGACACCCGCGTGTTCGTCGACACCATCGT-CAAGTGCAA-CCTCC 718 consensus_4743#1 GGCAAAAAGCCGGGGGAAAAC-GGGTGTTTGTTGAACACATTGTTCANGNGCAAACCTCC 174 consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 AGTCTCTC-GCCAAGA-CCGCCG-AGAAGCTCGCCGCCGG-CGCGAGGGCCGCCGG-CTC 773 consensus_4743#1 AGTTTTTTTGCCAAGGGNCGCCGGNGAAGTTCCCCGCCGGGCGNGAGGGCCGCCGGGTTN 234 consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 GTGAGCGCTCT-CCACCGCCGGGCCACCGATCGTTTTTTTCC--GGGCGG-ATGGATGTG 829 consensus_4743#1 GTGAGCGNTTTTCCACCGCGGGGCCACCGATCGTTTTTTTTCCGGGGCGGGATGGATGTG 294 consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 TGTTTCTT-CGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCCCTCTGGTTTC 888 consensus_4743#1 TGTTTCTTTCGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCTCTTTGGTTTC 354 consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 TTCA-CATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAG 947 consensus_4743#1 TTCAACATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAG 414 consensus_4743#2 ------------------------------------------------------------ consensus_4743#0 ACACACAAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGAC 1007 consensus_4743#1 ACACACAAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGAC 474 consensus_4743#2 ------------------------------------------ATGACATGTATAATTGAC 18 ****************** consensus_4743#0 AGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATAT 1067 consensus_4743#1 AGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATAT 534 consensus_4743#2 AGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATAT 78 ************************************************************ consensus_4743#0 ACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTG 1127 consensus_4743#1 ACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTG 594 consensus_4743#2 ACATAAACACGATAGTAGTATTAGATATTTAGATCCGTTCTCTGGCNCAAAAAAAAAAAA 138 *********************************** ********** **** *** consensus_4743#0 TACGTTCGTATTTAAAGTTGTGCTACA--------------- 1154 consensus_4743#1 TACGTTCGT--------------------------------- 603 consensus_4743#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 180 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||