These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 561 fasta sequence [CGCCCGGGGGGGTCGTGGCAGGTTTTCCTCGACATCCTCCGAACCGACGGGCCCCTGGGGCTCTACCGCGGCCTCTCCGCCGTNATCCTCGGCTCCGCGTCCTCCTCCGCCGTCTACTTCGGCACGTGCNAGCTCGCCAAGTCGCTGCTCCGCCCCCACCTCCCACCCTTCCTCGTGCCGCCGCTCGCCGGCGCCACGGCAACGTCTCCTCCTCCGCCATCATGGTCCCCAAGGAGCTCATCACCCAGCGCCTCCAATCCGGCGCCGCCAAGGGCCGCTCATGGCAGGTGCTCCTTCAGATCCTCCAGACCGACGGATTCTTCGGCCTCTACGCCGGCTACGCGCCACCCTCCTCCGCAACCTCCCCGCGGGGGTCCTCAGCTACTCCTCCTTCGAGTACCTCAAGGCATTCACCCTCAAGCAACGCAACAAGGAGAGCCTCACGCCGGGAGAGAGTNTGCTGTGCGGCGCTCTCGCGGGGGCCATATCGGCGGGCGCTCAACANCCCGTTCGACGTCGTCAAGAGGNGCTTNATGACAGGGTNGGCACGAGGGGAGCCGN] [+] EMBL C26285 [CGCCCGGGGGGGTCGTGGCAGGTTTTCCTCGACATCCTCCGAACCGACGGGCCCCTGGGGCTCTACCGCGGCCTCTCCGCCGTNATCCTCGGCTCCGCGTCCTCCTCCGCCGTCTACTTCGGCACGTGCNAGCTCGCCAAGTCGCTGCTCCGCCCCCACCTCCCACCCTTCCTCGTGCCGCCGCTCGCCGGCGCCACGGCAACGTCTCCTCCTCCGCCATCATGGTCCCCAAGGAGCTCATCACCCAGCGCCTCCAATCCGGCGCCGCCAAGGGCCGCTCATGGCAGGTGCTCCTTCAGATCCTCCAGACCGACGGATTC ] [+] EMBL OSC24392 [ AAGGAGCTCATCACCCAGCGCCTCCAATCCGGCGCCGCCAAGGGCCGCTCATGGCAGGTGCTCCTTCAGATCCTCCAGACCGACGGATTCTTCGGCCTCTACGCCGGCTACGCGCCACCCTCCTCCGCAACCTCCCCGCGGGGGTCCTCAGCTACTCCTCCTTCGAGTACCTCAAGGCATTCACCCTCAAGCAACGCAACAAGGAGAGCCTCACGCCGGGAGAGAGTNTGCTGTGCGGCGCTCTCGCGGGGGCCATATCGGCGGGCGCTCAACANCCCGTTCGACGTCGTCAAGAGGNGCTTNATGACAGGGTNGGCACGAGGGGAGCCGN] consensusID : consensus_4761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [NGTCCTGANTGAGTCCCCAACGGAGCGTCATCACCCAACTGCCTCCAANTCCAGGCGCCGCCAAGGGCCGCTCATGGCAGGGTGCTCCATTCAGATCCTCCAGACCGACCGGATTCTTCNGGCCTCTACGCCGGCTACGCCGCCACCCTCCTCCGCAACCTCCCCGNGGGGGTCCTCAGCTACTNCTCCTTCGAGTACCTCAAGGCATTNACCCTCAAGCAACGCAACAAGGGAGAGCCTCACGCCGTGGAGAGANTNTGCCTGTTGCGNGCGCTCTNCGCGGGGGGGCCAATATTCGGGCGGGCGCTCAACCANCCCCCCGNTTCGAACGGTCGGT] [+] EMBL OSC27171 [NGTCCTGANTGAGTCCCCAACGGAGCGTCATCACCCAACTGCCTCCAANTCCAGGCGCCGCCAAGGGCCGCTCATGGCAGGGTGCTCCATTCAGATCCTCCAGACCGACCGGATTCTTCNGGCCTCTACGCCGGCTACGCCGCCACCCTCCTCCGCAACCTCCCCGNGGGGGTCCTCAGCTACTNCTCCTTCGAGTACCTCAAGGCATTNACCCTCAAGCAACGCAACAAGGGAGAGCCTCACGCCGTGGAGAGANTNTGCCTGTTGCGNGCGCTCTNCGCGGGGGGGCCAATATTCGGGCGGGCGCTCAACCANCCCCCCGNTTCGAACGGTCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4761#0 CGCCCGGGGGGGTCGTGGCAGGTTTTCCTCGACATCCTCCGAACCGACGGGCCCCTGGGG 60 consensus_4761#1 ------------------------------------------------------------ consensus_4761#0 CTCTACCGCGGCCTCTCCGCCGTNATCCTCGGCTCCGCGTCCTCCTCCGCCGTCTACTTC 120 consensus_4761#1 ------------------------------------------------------------ consensus_4761#0 GGCACGTGCNAGCTCGCCAAGTCGCTGCTCCGCCCCCACCTCCCACCCTTCCTCGTGCCG 180 consensus_4761#1 ------------------------------------------------------------ consensus_4761#0 CCGCTCGCCGGCGCCACGGCAACGTCTCCTCCTCCGCCATCATGGTCCCCAAGGAGC-TC 239 consensus_4761#1 -------------------------------NGTCCTGANTGAGTCCCCAACGGAGCGTC 29 * * * *** * ***** ** consensus_4761#0 ATCACCCAGC-GCCTCCAATCC--GGCGCCGCCAAGGGCCGCTCATGGCAGG-TGCTCC- 294 consensus_4761#1 ATCACCCAACTGCCTCCAANTCCAGGCGCCGCCAAGGGCCGCTCATGGCAGGGTGCTCCA 89 ******** * ******** * **************************** ****** consensus_4761#0 TTCAGATCCTCCAGACCGAC-GGATTCTTCGG-CCTCTACGCCGGCTACGC-GCCACCCT 351 consensus_4761#1 TTCAGATCCTCCAGACCGACCGGATTCTTCNGGCCTCTACGCCGGCTACGCCGCCACCCT 149 ******************** ********* * ****************** ******** consensus_4761#0 CCTCCGCAACCTCCCCGCGGGGGTCCTCAGCTACTCCTCCTTCGAGTACCTCAAGGCATT 411 consensus_4761#1 CCTCCGCAACCTCCCCGNGGGGGTCCTCAGCTACTNCTCCTTCGAGTACCTCAAGGCATT 209 ***************** ***************** ************************ consensus_4761#0 CACCCTCAAGCAACGCAACAAGG-AGAGCCTCACGCCG-GGAGAGAGTNTGCT------G 463 consensus_4761#1 NACCCTCAAGCAACGCAACAAGGGAGAGCCTCACGCCGTGGAGAGANTNTGCCTGTTGCG 269 ********************** ************** ******* ***** * consensus_4761#0 TGCGGCGCTCTCGCGGGGGCCA-TATC--GGCGGGCGCTCAACANCCCGTTCGACGTCGT 520 consensus_4761#1 NGCGCTCTNCGCGGGGGGGCCAATATTCGGGCGGGCGCTCAACCANCCCCCCGNTTCGAA 329 *** * ** ******** *** ************** ** ** consensus_4761#0 CAAGAGGNGCTTNATGACAGGGTNGGCACGAGGGGAGCCGN 561 consensus_4761#1 CGGTCGGT--------------------------------- 337 * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||