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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 569 fasta sequence
[ATGGCATCACTACCACAATGGTTAGGAGAACTCACCTCTCTTGAAAAGCTGACATTGAGGTACCGCAAAAATCTGAATGATTTGCAACAGACAATGTGTGACAACCTCACCTCCCTGCAGCCACTAACATTGGAAAAATGCGTTAGAATTCCTTCTCAACCTGAAAGGATGAGCAAACTCAACTCTTTGAAAGAACTAAAAGACAATCAGGCAGAGCAACCAAGATTGTTGGGTGGGATCACATGCGTACAGAACCTGACTTTAAATGGCTTCCCTGATCTGCTGGACTTGCAAGGGAGCATGAGGCAACTCACTTCACTACCATCACTACATCTGTATCAATGCAATAGCATGACATCGCTACCACAATGGTTAGGAGAACTTACCTCTCTCAAAAGGTTGAGGATAGAGGGTTGCGAAAAGCTGAATGATTTGCAAGNNACATTATGCAACATCACCTCCCTACAGTCACTNNNNTTGGAATTTTGCCACNNNNNTCACTCTCTGCCTGNANNNATGGGNGNNNTCATCTNNNTCANGNANCTGCNNNTNGNTNNNTGNNNNNNCAT]
[+] EMBL CF197004 [ATGGCATCACTACCACAATGGTTAGGAGAACTCACCTCTCTTGAAAAGCTGACATTGAGGTACCGCAAAAATCTGAATGATTTGCAACAGACAATGTGTGACAACCTCACCTCCCTGCAGCCACTAACATTGGAAAAATGCGTTAGAATTCCTTCTCAACCTGAAAGGATGAGCAAACTCAACTCTTTGAAAGAACTAAAAGACAATCAGGCAGAGCAACCAAGATTGTTGGGTGGGATCACATGCGTACAGAACCTGACTTTAAATGGCTTCCCTGATCTGCTGGACTTGCAAGGGAGCATGAGGCAACTCACTTCACTACCATCACTACATCTGTATCAATGCAATAGCATGACATCGCTACCACAATGGTTAGGAGAACTTACCTCTCTCAAAAGGTTGAGGATAGAGGGTTGCGAAAAGCTGAATGATTTGCAAGNNACATTATGCAACATCACCTCCCTACAGTCACTNNNNTTGGAATTTTGCCACNNNNNTCACTCTCTGCCTGNANNNATGGGNGNNNTCATCTNNNTCANGNANCTGCNNNTNGNTNNNTGNNNNNNCAT]
[+] EMBL CF196923 [ATGGCATCACTACCACAATGGTTAGGAGAACTCACCTCTCTTGAAAAGCTGACATTGAGGTACCGCAAAAATCTGAATGATTTGCAACAGACAATGTGTGACAACCTCACCTCCCTGCAGCCACTAACATTGGAAAAATGCGTTAGAATTCCTTCTCAACCTGAAAGGATGAGCAAACTCAACTCTTTGAAAGAACTAAAAGACAATCAGGCAGAGCAACCAAGATTGTTGGGTGGGATCACATGCGTACAGAACCTGACTTTAAATGGCTTCCCTGATCTGCTGGACTTGCAAGGGAGCATGAGGCAACTCACTTCACTACCATCACTACATCTGTATCAATGCAATAGCATGACATCGCTACCACAATGGTTAGGAGAACTTACCTCTCTCAAAAGGTTGAGGATAGANNGTTGCGAAAAGCTGAATGATTTGCAAGNNACATTATGCAACATCACCTCCCTACAGTCACTAGAATTGGANNNNNGCCNNNNAATTCACTCTCTGCCNNNNNNNATGGGTGACCTCATCTCGCTNNNNNNNCTGC ]
consensusID : consensus_4769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence
[TTGGTTGGAATCACATGCGTACAAGAACCTGACTTTAAATGGCTTTCCCTGATCTGCTGGACTTGCAAGGACCATGAGCCAACTCACTTCACCTACCAATCACCTATATCTGTATCAATGCACATAGCATGACATCGCTACCAACAATGGTTTAGGAGAACTTACCTCTCTCAAAAGTTTGAGGATAGAGGTTGCGAAAAGCTGAATGATTTGCAAGAGACATTATGCAACATCACCTCCCTACAGTCACTAGAATTGGAATTTTGCCACAGAATTCACTCTCTGCCTGAAAGGATGGGTGACCTCATCTCGCTCAAGGAACTCAATCGATAGATGAAGGGCATCAGTTCATTGCCAGAGAGTATACAACAACTCACTAATCTCGAAAATCTATGTATTCATATGTGCCCCGGATTACGGCAGTGGTATCAATCTGATGAGAACCGAGAAGAAACTCGCTCACATAAAAA]
[+] EMBL BI812780 [TTGGTTGGAATCACATGCGTACAAGAACCTGACTTTAAATGGCTTTCCCTGATCTGCTGGACTTGCAAGGACCATGAGCCAACTCACTTCACCTACCAATCACCTATATCTGTATCAATGCACATAGCATGACATCGCTACCAACAATGGTTTAGGAGAACTTACCTCTCTCAAAAGTTTGAGGATAGAGGTTGCGAAAAGCTGAATGATTTGCAAGAGACATTATGCAACATCACCTCCCTACAGTCACTAGAATTGGAATTTTGCCACAGAATTCACTCTCTGCCTGAAAGGATGGGTGACCTCATCTCGCTCAAGGAACTCAATCGATAGATGAAGGGCATCAGTTCATTGCCAGAGAGTATACAACAACTCACTAATCTCGAAAATCTATGTATTCATATGTGCCCCGGATTACGGCAGTGGTATCAATCTGATGAGAACCGAGAAGAAACTCGCTCACATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4769#0 ATGGCATCACTACCACAATGGTTAGGAGAACTCACCTCTCTTGAAAAGCTGACATTGAGG 60
consensus_4769#1 ------------------------------------------------------------
consensus_4769#0 TACCGCAAAAATCTGAATGATTTGCAACAGACAATGTGTGACAACCTCACCTCCCTGCAG 120
consensus_4769#1 ------------------------------------------------------------
consensus_4769#0 CCACTAACATTGGAAAAATGCGTTAGAATTCCTTCTCAACCTGAAAGGATGAGCAAACTC 180
consensus_4769#1 ------------------------------------------------------------
consensus_4769#0 AACTCTTTGAAAGAACTAAAAGACAATCAGGCAGAGCAACCAAGATTGTTGGGTGGGATC 240
consensus_4769#1 ------------------------------------------------TTGGTTGGAATC 12
**** *** ***
consensus_4769#0 ACATGCGTACA-GAACCTGACTTTAAATGGCTT-CCCTGATCTGCTGGACTTGCAAGGGA 298
consensus_4769#1 ACATGCGTACAAGAACCTGACTTTAAATGGCTTTCCCTGATCTGCTGGACTTGCAAGG-A 71
*********** ********************* ************************ *
consensus_4769#0 GCATGAGGCAACTCACTTCAC-TACCA-TCAC-TACATCTGTATCAATGCA-ATAGCATG 354
consensus_4769#1 CCATGAGCCAACTCACTTCACCTACCAATCACCTATATCTGTATCAATGCACATAGCATG 131
****** ************* ***** **** ** *************** ********
consensus_4769#0 ACATCGCTACCA-CAATGGTT-AGGAGAACTTACCTCTCTCAAAAGGTTGAGGATAGAGG 412
consensus_4769#1 ACATCGCTACCAACAATGGTTTAGGAGAACTTACCTCTCTCAAAAGTTTGAGGATAGAGG 191
************ ******** ************************ *************
consensus_4769#0 GTTGCGAAAAGCTGAATGATTTGCAAGNNACATTATGCAACATCACCTCCCTACAGTCAC 472
consensus_4769#1 -TTGCGAAAAGCTGAATGATTTGCAAGAGACATTATGCAACATCACCTCCCTACAGTCAC 250
************************** *******************************
consensus_4769#0 TNNNNTTGGAATTTTGCCACNNNNNTCACTCTCTGCCTGNANNNATGGGNGNNNTCATCT 532
consensus_4769#1 TAGAATTGGAATTTTGCCACAGAATTCACTCTCTGCCTGAAAGGATGGGTGACCTCATCT 310
* *************** ************** * ***** * ******
consensus_4769#0 NNNTCANGNANCT--GCNNNTNGNTNNNTGNNNNNNCAT--------------------- 569
consensus_4769#1 CGCTCAAGGAACTCAATCGATAGATGAAGGGCATCAGTTCATTGCCAGAGAGTATACAAC 370
*** * * ** * * * * *
consensus_4769#0 ------------------------------------------------------------
consensus_4769#1 AACTCACTAATCTCGAAAATCTATGTATTCATATGTGCCCCGGATTACGGCAGTGGTATC 430
consensus_4769#0 ----------------------------------------
consensus_4769#1 AATCTGATGAGAACCGAGAAGAAACTCGCTCACATAAAAA 470
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||