These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 501 fasta sequence [GAGTAATGATTTCCAATGCCATCAAAACTTTCTTTGAGCCAGCAGACAAACTAAAAAAGGATGCTAGCTTTTGGGGTTTGATGTGTGTTGTCCTGGGTATAATTTCAATAATATCAATACCGGTGGAGTACTTTATGTTTGGAATAGCTGGAGGTAAACTTGTAGAGCGTGTCCGTGCCTTGTCATTCCGGAGTATTATTCACCAAGAAGTTGCTTGGTTTGATGATCCTAGGAATTCCAGTGGAGCGCTTGGTGCAAGATTATCAGTAGGATGCTTTTGAATGTCCGGCGGTTTAGGTTGGGAGACAATCTTGCATTGGCAAGTTCAAGGCGTCTCAACACTTATCACAAGGATTTGTCAAAGGCATGATAGCGGACTGGAAGCTCACTTTGATCATCCTTTTGTGTGATTCCACTTGTGGGTCTTCAAGGTTATGCTCAAGTTAAGTTCCTGAAGGGGTTCAGTGAAGATGCCAAGATGTTGTATGAGGATGCAAGTCA] [+] EMBL OSC111271 [GAGTAATGATTTCCAATGCCATCAAAACTTTCTTTGAGCCAGCAGACAAACTAAAAAAGGATGCTAGCTTTTGGGGTTTGATGTGTGTTGTCCTGGGTATAATTTCAATAATATCAATACCGGTGGAGTACTTTATGTTTGGAATAGCTGGAGGTAAACTTGTAGAGCGTGTCCGTGCCTTGTCATTCCGGAGTATTATTCACCAAGAAGTTGCTTGGTTTGATGATCCTAGGAATTCCAGTGGAGCGCTTGGTGCAAGATTATCAGTAGGATGCTTTTGAATGTCCGGCGGTTTAGGTTGGGAGACAATCTTGCATTGGCAAGTTCAAGGCGTCTCAACACTTATCACAAGGATTTGTCAAAGGC ] [+] EMBL C26201 [ ACTAAAAAAGGATGCTAGCTTTTGGGGTTTGATGTGTGTTGTCCTGGGTATAATTTCAATAATATCAATACCGGTGGAGTACTTTATGTTTGGAATAGCTGGAGGTAAACTTGTAGAGCGTGTCCGTGCCTTGTCATNCCGGAGTATTATTCACCAAGAAGTTGCTTGGTTTGATGATCCTAGGAATTCCAGTGGAGCGCTTGGTGCAAGATTATCAGTA GATGC TTTGAATGTCCGGC GTTTA GTT GGAGACAATCTTGCATTGGC AGTTCAGGTCGTCTCAACACTTATCAC AGGAATTGTCATAGCGATGATAGCGGACTGGAAGCTCACTTTGATCATCCTTTTGTGTGATTCCACTTGTGGGTCTTCAAGGTTATGCTCAAGTTAAGTTCCTGAAGGGGTTCAGTGAAGATGCCAAGATGTTGTATGAGGATGCAAGTCA] consensusID : consensus_4773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [AAGATGCCAAGATGTTGTATGAAGATGCAAGTCAAGTGGCTACTGATGCAGTAAGCAGCATCAGGACTGTAGCTTCCTTTTGTTCTGAGAAAAGAGTGATGACAATGTATGATAATAAATGTGAAGCTTCGAAGAATCAAGGAGTTAGAACAGGAATGGTTGGAGGCCTTGGTTTTGGTTTCTCATTCTTGATGTTGTACCTAACATATGGTCTCTGTTTCTATGTCGGAGCACAATTCGTACGCCACAATAAAACTACTTTTGGGGACGTTTTCAAGGTTTTCTTTGCACTGGTGTTGGCAACTATTGGAATATCTCAAACAAGTGCGATGGCTTCTGATTCTACAAAGGCCAAGGATTCAGCTATCTCCATATTTGCTTTGCTAGACCGCAAGTCACAAATTGACTCGNGTAGGTTATGAGGGGTAGGGCCATTGGCCACCGGCAAAGGGGAACAT] [+] EMBL C26111 [AAGATGCCAAGATGTTGTATGAAGATGCAAGTCAAGTGGCTACTGATGCAGTAAGCAGCATCAGGACTGTAGCTTCCTTTTGTTCTGAGAAAAGAGTGATGACAATGTATGATAATAAATGTGAAGCTTCGAAGAATCAAGGAGTTAGAACAGGAATGGTTGGAGGCCTTGGTTTTGGTTTCTCATTCTTGATGTTGTACCTAACATATGGTCTCTGTTTCTATGTCGGAGCACAATTCGTACGCCACAATAAAACTACTTTTGGGGACGTTTTCAAGGTTTTCTTTGCACTGGTGTTGGCAACTATTGGAATATCTCAAACAAGTGCGATGGCTTCTGATTCTACAAAGGCCAAGGATTCAGCTATCTCCATATTTGCTTTGCTAGACCGCAAGTCACAAATTGACTCGNGTAGGTTATGAGGGGTAGGGCCATTGGCCACCGGCAAAGGGGAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4773#0 GAGTAATGATTTCCA-ATGCCAT-CAAAACTTTCTTTGAGCCAGCAGACAAACTAAAAAA 58 consensus_4773#1 -----AAGATGCCAAGATGTTGTATGAAGATGCAAGTCAAGTGGCTACTGATGCAGTAAG 55 * *** * * *** * ** * * * ** * * ** consensus_4773#0 GGATGCTAGCTTTTGGGGTTTGATGTGTGTTGTCCTGGGTATAATTTCAATA-ATATCAA 117 consensus_4773#1 CAGCATCAGGACTGTAGCTTCCTTTTGTTCTGAGAAAAGAGTGATGACAATGTATGATAA 115 ** * * ** * *** ** * * ** **** ** ** consensus_4773#0 TACCGGTGGAGTACTTTATGTTTGGAATAGCTGGA---GGTAAACTTGTAGAGCGTGTCC 174 consensus_4773#1 TAAATGTGAAGC-TTCGAAGAATCAAGGAGTTAGAACAGGAATGGTTGGAGGCCTTGGTT 174 ** *** ** * * * * * ** * ** ** * *** ** * ** consensus_4773#0 GTGCCTTGTCATTCCGGA-GTATTATTCACCAAGAAGTTGCTTGGTTTGATGATCCTAGG 233 consensus_4773#1 TTGGTTTCTCATTCTTGATGTTGTACCTAACATATGGTCTCT-GTTTCTATG----TCGG 229 ** ** ****** ** ** ** * ** ** ** * ** *** * ** consensus_4773#0 AATTCCAGTGGAGCGCTTGGTGCAAGATTATCAGTAGG-ATGCTTTTGAA-TGTCCGGCG 291 consensus_4773#1 AGCACAATTCGTACGCCACA-ATAAAACTACTTTTGGGGACGTTTTCAAGGTTTTCTTTG 288 * * * * * *** ** * ** * ** * * *** * * * * * consensus_4773#0 GTTTAG-GTTGGGAGACAATCTTGCATT---GGCAAGTTCAAGGCGTCTCAACACTTATC 347 consensus_4773#1 CACTGGTGTTGGCAACTATTGGAATATCTCAAACAAGTGCGATGGCTTCTGATTCT---- 344 * * ***** * * * ** ***** * * * * * ** consensus_4773#0 ACAAGGATTTGTCAAAGGCATGATAGCGGACTGGAAGCTCACTTTGATCATCCTTTTGT- 406 consensus_4773#1 ACAAAG----GCCAAGGATTC---AGCTATCTCCATATTTGCTTTGCTAGACCGCAAGTC 397 **** * * *** * *** ** * * ***** * ** ** consensus_4773#0 GTGATTCCACTTGTG--GGTCTTCAAGGTTATGCTCAAGTTAAGTTCCTGAAGGGGTTCA 464 consensus_4773#1 ACAAATTGACTCGNGTAGGTTATGAGGGGTAGGGCCATTGGCCACCGGCAAAGGGGAACA 457 * * *** * * *** * * ** ** * ** ****** ** consensus_4773#0 GTGAAGATGCCAAGATGTTGTATGAGGATGCAAGTCA 501 consensus_4773#1 T------------------------------------ 458 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||