These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2045 fasta sequence [TCACACACCACGTCCCATCCCGTCGCGTCGCCGCACATTCACCCCCACACCCTTGCCGCGCCGCCCCGCCTGCCGTGCCGTCCGGCGAACCTACCTAGCCTAGCGCTAGCCTAGCTGAAGCCGGCAAGCAAGTGCAAACAGTGCCCAGGACCACCACCACCGCCATTGCCGCCACCTCTCCCTACAGCTGTTCGACTACGCCATTGTCGTCACTCACTCCACCGTACTACACTCGCCTTCTTCTCTCTCCTCTCCGACACGACAGCGACTTCTCCCTCCCGCCACCTTTTCCCTCCAAGAACCACCCCCCAAGAAAGCCCAGACCAGAGAGACAGTGTGCCGATGGCGATGGCGGTGGAGGGTGCGGGTGCGGGGGTGGTGGTGAGCGAGCCGGAGGTGGTGTCGATACCGCCGACGCCGAGGGGGATGTCGACGCCGGATGGGACGGCGACGCCGCCGCCGGCGGCGGGGAGGGGCGCGGCGACGCCGGCGACGCGGGTGGTGGAGAGGCTGCGGGGTTACCTGGAGGAGGTGGGACACCTGACGCGGCTGAACCCGCAGGACGCGTGGCTGCCCATCACCGAGTCCCGCAGCGGCAACGCCCGCTACGCCGCCTTCCACACCCTCAACGCCGGCCTCGGCTTCCAGGCCCTCCTCCTCCCCCTCGCCTTCCCCGCCCTCGGATGGAGCTGGGGAATAATATCACTTACTGTTGCTTATTTCTGGCAACTGTACACACTCTGGATTCTTGTCAAGCTCCATGAAGCTGTACCAGGAAGGAGGTACAACAGATATGTGGAGCTTGCACAAGCTGCATTTGGAGAAAAACTGGGAATGTGGCTATCTCTTTTCCCAACTATTTATCTGTCGGCAGGCAGTGCAACTGCGTTGATCCTTGTTGGAGGGGAGACCATGAAGCTCTTTTACCAAATAGTTTGCGGCCCAATCTGTTCACCGAGTCCGATTTCGACGATCGAATGGTACTTGGTGTTCACATCCTTGGCCATAGTCCTTTCCCAGCTTCCGAATCTCAACTCGATAGCCGGCGTTTCACTCATCGGTGGCACCACCGCAATAACATACTGTACCATGTCCTGGGTTCTCTCGGTCAGCCAACCGCAGCCTCCAACAGTCTCTTATGAACCACAAGCATACACTTCTCTTGGTTCATCTTTGTTCTCCACCTTGAATGCTCTTGGAATAATAGCATTTGCATTCAGGGGGCACAATCTTGCACTTGAAATACAGGCGACAATGCCGTCGACTTTCAAACATCCAGCACATGTCCCGATGTGGCGCGGGGCCAAAGTCGCATATGCCCTGTTTGCAATGTGCCTCTTCCCTGTCGCGATCGGAGGTTACTGGGCCTATGGAAACATGGTGCCACAGGGAGGGATGCTGACGGCGCTCTACGCCTTCCACAGCCACGACATCCCCCGGGGCCTCCTTGCTGCGACGTTCCTCCTTGTCGTGTTCAACTGCCTGAGCAGCTTCCAGATATACTCCATGCCGGTTTTCGACAGCTTTGAGGCTGCCTACACGGGCCGGACCAACCGGCCTTGCTCGGTCTGGGTGAGATCAGGCTTCAGGGTGTTCTACGGCTTCCTCTCGCTGTTCATCAGCGTCGCGCTGCCGTTCCTCTCCAGCCTCGCCGGCCTGCTTGGGGGGCTGACA-TTGCCGGTCACCTTCGCCTACCCGTGCTTCATGTGGATCTGCATCAAGAAGCCTGAGAGGTTCAGCTCAGGATGGTACCTGAACTGGGGGCTTGGGCTGCTTGGCACTGCATTCAGCCTGGCTCTCTGTGTGGGTGGTGTCTGGAGCATCATCAGCAGTGGGATGAAGTTCAAGTTCTTCAAGCCCCCAAGCTAGATTGACCAGCAATTTCCAGTATCAAACTTGCAAAATCAGTACAAATTCTGGTGTGTTTGTGATATTTTCAGACAATGGAAA-AGCATATCCCAGCTGGCCTCCGCATTGTGGGTGTGCTTGTCATATGGTTATATGAATGATATATGATGATGATATATATGGTTTATCTTAAAAAA] [+] EMBL AK100852 [TCACACACCACGTCCCATCCCGTCGCGTCGCCGCACATTCACCCCCACACCCTTGCCGCGCCGCCCCGCCTGCCGTGCCGTCCGGCGAACCTACCTAGCCTAGCGCTAGCCTAGCTGAAGCCGGCAAGCAAGTGCAAACAGTGCCCAGGACCACCACCACCGCCATTGCCGCCACCTCTCCCTACAGCTGTTCGACTACGCCATTGTCGTCACTCACTCCACCGTACTACACTCGCCTTCTTCTCTCTCCTCTCCGACACGACAGCGACTTCTCCCTCCCGCCACCTTTTCCCTCCAAGAACCACCCCCCAAGAAAGCCCAGACCAGAGAGACAGTGTGCCGATGGCGATGGCGGTGGAGGGTGCGGGTGCGGGGGTGGTGGTGAGCGAGCCGGAGGTGGTGTCGATACCGCCGACGCCGAGGGGGATGTCGACGCCGGATGGGACGGCGACGCCGCCGCCGGCGGCGGGGAGGGGCGCGGCGACGCCGGCGACGCGGGTGGTGGAGAGGCTGCGGGGTTACCTGGAGGAGGTGGGACACCTGACGCGGCTGAACCCGCAGGACGCGTGGCTGCCCATCACCGAGTCCCGCAGCGGCAACGCCCGCTACGCCGCCTTCCACACCCTCAACGCCGGCCTCGGCTTCCAGGCCCTCCTCCTCCCCCTCGCCTTCCCCGCCCTCGGATGGAGCTGGGGAATAATATCACTTACTGTTGCTTATTTCTGGCAACTGTACACACTCTGGATTCTTGTCAAGCTCCATGAAGCTGTACCAGGAAGGAGGTACAACAGATATGTGGAGCTTGCACAAGCTGCATTTGGAGAAAAACTGGGAATGTGGCTATCTCTTTTCCCAACTATTTATCTGTCGGCAGGCAGTGCAACTGCGTTGATCCTTGTTGGAGGGGAGACCATGAAGCTCTTTTACCAAATAGTTTGCGGCCCAATCTGTTCACCGAGTCCGATTTCGACGATCGAATGGTACTTGGTGTTCACATCCTTGGCCATAGTCCTTTCCCAGCTTCCGAATCTCAACTCGATAGCCGGCGTTTCACTCATCGGTGGCACCACCGCAATAACATACTGTACCATGTCCTGGGTTCTCTCGGTCAGCCAACCGCAGCCTCCAACAGTCTCTTATGAACCACAAGCATACACTTCTCTTGGTTCATCTTTGTTCTCCACCTTGAATGCTCTTGGAATAATAGCATTTGCATTCAGGGGGCACAATCTTGCACTTGAAATACAGGCGACAATGCCGTCGACTTTCAAACATCCAGCACATGTCCCGATGTGGCGCGGGGCCAAAGTCGCATATGCCCTGTTTGCAATGTGCCTCTTCCCTGTCGCGATCGGAGGTTACTGGGCCTATGGAAACATGGTGCCACAGGGAGGGATGCTGACGGCGCTCTACGCCTTCCACAGCCACGACATCCCCCGGGGCCTCCTTGCTGCGACGTTCCTCCTTGTCGTGTTCAACTGCCTGAGCAGCTTCCAGATATACTCCATGCCGGTTTTCGACAGCTTTGAGGCTGCCTACACGGGCCGGACCAACCGGCCTTGCTCGGTCTGGGTGAGATCAGGCTTCAGGGTGTTCTACGGCTTCCTCTCGCTGTTCATCAGCGTCGCGCTGCCGTTCCTCTCCAGCCTCGCCGGCCTGCTTGGGGGGCTGACA TTGCCGGTCACCTTCGCCTACCCGTGCTTCATGTGGATCTGCATCAAGAAGCCTGAGAGGTTCAGCTCAGGATGGTACCTGAACTGGGGGCTTGGGCTGCTTGGCACTGCATTCAGCCTGGCTCTCTGTGTGGGTGGTGTCTGGAGCATCATCAGCAGTGGGATGAAGTTCAAGTTCTTCAAGCCCCCAAGCTAGATTGACCAGCAATTTCCAGTATCAAACTTGCAAAATCAGTACAAATTCTGGTGTGTTTGTGATATTTTCAGACAATGGAAA AGCATATCCCAGCTGGCCTCCGCATTGTGGGTGTGCTTGTCATATGGTTATATGAATGATATA ] [+] EMBL BI805091 [ TTGCTCGTTCTGGGTGAGATCAGGCTTCAGGGTGTTCTATGGCTTCCTCTCGCTGTTCATCAGCGTCGCGCT CCGTTCCTCTCCAGCCTCGCCGGCCTGCTTGGGGGGCTGACACTTGCCGGTCACCTTCGCCTACCCGTGCTTCATGTGGATCTGCATCAAGAAGCCTGAGAGGTTCAGCTCAGGATGGTACCTGAACTGGGGGCTTGGGCTGCTTGGCACTGCATTCAGCCTGGCTCTCTGTGT GGTGGTGTCTGGAGCATCATCAGCAGTGGGATGAAGTTCAAGTTCTTCAAGCCCCCAAGCTAGATTGACCAGCAATTTCCAGTATCAAACTTGCAAAATCAGTACAAATTCTGGTGTGTTTGTGATATTTTCAGAC ATGGAAAGAGCATATCCCAGCTGGCCTCCGC TTGTGGGTGTGCTTGTCATATGGTTATATGAATGATATATGATGATGATATATATGGTTTATCTTAAAAAA] consensusID : consensus_4779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [CTTGGGGGCTGACANTGCCCGGTCACCTTCGCTCTACCCGNTCTTCATGTGGATCTGCATCAAGAAGCCTGTAGAGGTTCAGCTCAGGATGGTACCTGAACTGGGGCTTGGCTGCTTGGGCANCTGCATTCAGCCTGGCTCTCTGTGTGGGTGGTGTCTGGAGCATCATCACAAGTGGGATGAAGTTCAAGTTCTTCAAGCCACCCAAGCTAGATTGACCAACCAATTTGCCAAGTGATCAAAACNNTGCAAAATCAAGTACAAATTCTGGTGTGTTTGTGATATTTTCAGACAATGGAAAAGCATATCCCAGCTGGCACNNCCAGCATTTGTGGGTGTGCATTGTCATATGGTTATATGAATGATATATGATGATGATATATATGGTGTTATCTTAAAAA] [+] EMBL BI806263 [CTTGGGGGCTGACANTGCCCGGTCACCTTCGCTCTACCCGNTCTTCATGTGGATCTGCATCAAGAAGCCTGTAGAGGTTCAGCTCAGGATGGTACCTGAACTGGGGCTTGGCTGCTTGGGCANCTGCATTCAGCCTGGCTCTCTGTGTGGGTGGTGTCTGGAGCATCATCACAAGTGGGATGAAGTTCAAGTTCTTCAAGCCACCCAAGCTAGATTGACCAACCAATTTGCCAAGTGATCAAAACNNTGCAAAATCAAGTACAAATTCTGGTGTGTTTGTGATATTTTCAGACAATGGAAAAGCATATCCCAGCTGGCACNNCCAGCATTTGTGGGTGTGCATTGTCATATGGTTATATGAATGATATATGATGATGATATATATGGTGTTATCTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4779#0 TCACACACCACGTCCCATCCCGTCGCGTCGCCGCACATTCACCCCCACACCCTTGCCGCG 60 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 CCGCCCCGCCTGCCGTGCCGTCCGGCGAACCTACCTAGCCTAGCGCTAGCCTAGCTGAAG 120 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 CCGGCAAGCAAGTGCAAACAGTGCCCAGGACCACCACCACCGCCATTGCCGCCACCTCTC 180 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 CCTACAGCTGTTCGACTACGCCATTGTCGTCACTCACTCCACCGTACTACACTCGCCTTC 240 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 TTCTCTCTCCTCTCCGACACGACAGCGACTTCTCCCTCCCGCCACCTTTTCCCTCCAAGA 300 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 ACCACCCCCCAAGAAAGCCCAGACCAGAGAGACAGTGTGCCGATGGCGATGGCGGTGGAG 360 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 GGTGCGGGTGCGGGGGTGGTGGTGAGCGAGCCGGAGGTGGTGTCGATACCGCCGACGCCG 420 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 AGGGGGATGTCGACGCCGGATGGGACGGCGACGCCGCCGCCGGCGGCGGGGAGGGGCGCG 480 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 GCGACGCCGGCGACGCGGGTGGTGGAGAGGCTGCGGGGTTACCTGGAGGAGGTGGGACAC 540 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 CTGACGCGGCTGAACCCGCAGGACGCGTGGCTGCCCATCACCGAGTCCCGCAGCGGCAAC 600 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 GCCCGCTACGCCGCCTTCCACACCCTCAACGCCGGCCTCGGCTTCCAGGCCCTCCTCCTC 660 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 CCCCTCGCCTTCCCCGCCCTCGGATGGAGCTGGGGAATAATATCACTTACTGTTGCTTAT 720 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 TTCTGGCAACTGTACACACTCTGGATTCTTGTCAAGCTCCATGAAGCTGTACCAGGAAGG 780 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 AGGTACAACAGATATGTGGAGCTTGCACAAGCTGCATTTGGAGAAAAACTGGGAATGTGG 840 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 CTATCTCTTTTCCCAACTATTTATCTGTCGGCAGGCAGTGCAACTGCGTTGATCCTTGTT 900 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 GGAGGGGAGACCATGAAGCTCTTTTACCAAATAGTTTGCGGCCCAATCTGTTCACCGAGT 960 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 CCGATTTCGACGATCGAATGGTACTTGGTGTTCACATCCTTGGCCATAGTCCTTTCCCAG 1020 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 CTTCCGAATCTCAACTCGATAGCCGGCGTTTCACTCATCGGTGGCACCACCGCAATAACA 1080 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 TACTGTACCATGTCCTGGGTTCTCTCGGTCAGCCAACCGCAGCCTCCAACAGTCTCTTAT 1140 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 GAACCACAAGCATACACTTCTCTTGGTTCATCTTTGTTCTCCACCTTGAATGCTCTTGGA 1200 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 ATAATAGCATTTGCATTCAGGGGGCACAATCTTGCACTTGAAATACAGGCGACAATGCCG 1260 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 TCGACTTTCAAACATCCAGCACATGTCCCGATGTGGCGCGGGGCCAAAGTCGCATATGCC 1320 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 CTGTTTGCAATGTGCCTCTTCCCTGTCGCGATCGGAGGTTACTGGGCCTATGGAAACATG 1380 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 GTGCCACAGGGAGGGATGCTGACGGCGCTCTACGCCTTCCACAGCCACGACATCCCCCGG 1440 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 GGCCTCCTTGCTGCGACGTTCCTCCTTGTCGTGTTCAACTGCCTGAGCAGCTTCCAGATA 1500 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 TACTCCATGCCGGTTTTCGACAGCTTTGAGGCTGCCTACACGGGCCGGACCAACCGGCCT 1560 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 TGCTCGGTCTGGGTGAGATCAGGCTTCAGGGTGTTCTACGGCTTCCTCTCGCTGTTCATC 1620 consensus_4779#1 ------------------------------------------------------------ consensus_4779#0 AGCGTCGCGCTGCCGTTCCTCTCCAGCCTCGCCGGCCTGCTTGGGGGGCTGACATTGCC- 1679 consensus_4779#1 ----------------------------------------CTTGGGGGCTGACANTGCCC 20 * *********** **** consensus_4779#0 GGTCACCTTCGC-CTACCCGTGCTTCATGTGGATCTGCATCAAGAAGCCTG-AGAGGTTC 1737 consensus_4779#1 GGTCACCTTCGCTCTACCCGNTCTTCATGTGGATCTGCATCAAGAAGCCTGTAGAGGTTC 80 ************ ******* ***************************** ******** consensus_4779#0 AGCTCAGGATGGTACCTGAACTGGGGGCTTGGGCTGCTTGGC--ACTGCATTCAGCCTGG 1795 consensus_4779#1 AGCTCAGGATGGTACCTGAACTGGGG--CTTGGCTGCTTGGGCANCTGCATTCAGCCTGG 138 ************************** * ********** *************** consensus_4779#0 CTCTCTGTGTGGGTGGTGTCTGGAGCATCATCAGCAGTGGGATGAAGTTCAAGTTCTTCA 1855 consensus_4779#1 CTCTCTGTGTGGGTGGTGTCTGGAGCATCATCACAAGTGGGATGAAGTTCAAGTTCTTCA 198 ********************************* ************************* consensus_4779#0 AGCC-CCCAAGCTAGATTGACCAGC-AATTTCC--AGT-ATCAAA--CTTGCAAAATCA- 1907 consensus_4779#1 AGCCACCCAAGCTAGATTGACCAACCAATTTGCCAAGTGATCAAAACNNTGCAAAATCAA 258 **** ****************** * ***** * *** ****** ********** consensus_4779#0 GTACAAATTCTGGTGTGTTTGTGATATTTTCAGACAATGGAAAAGCATATCCCAGCTGGC 1967 consensus_4779#1 GTACAAATTCTGGTGTGTTTGTGATATTTTCAGACAATGGAAAAGCATATCCCAGCTGGC 318 ************************************************************ consensus_4779#0 CTCCGCA----TTGTGGGTGTGC-TTGTCATATGGTTATATGAATGATATATGATGATGA 2022 consensus_4779#1 ACNNCCAGCATTTGTGGGTGTGCATTGTCATATGGTTATATGAATGATATATGATGATGA 378 ** ************ ************************************ consensus_4779#0 TATATATGGT-TTATCTTAAAAAA 2045 consensus_4779#1 TATATATGGTGTTATCTTAAAAA- 401 ********** ************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||