cluster # 4780

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Oryza sativa
cluster # 4780 cluster # 4780 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4780#0 length = 1711 sequences # 2

consensus_4780#1 length = 190 sequences # 1

consensusID : consensus_4780#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1711
fasta sequence

                              [AAATTAATCCGCGTGGTTAATTAGCTCTAGCTAGAGATCGGTAGCTCTCGACTAGTTGGACATGGCCGCCACGGGCGTGCTCGTCGTCGTTGTGGCGCTCGTGTTCGCCGTGACGGTGGCTGGCGGCGGCGGCGCCGGAGTAGGAGGTGATGGCGGGTTCATCACGTGGGAGGACCTGAGCATGCCGGCCGGGGCGGCGCGGAGCAGCACGTGGGACGACACGGCCGGCGGTGGCGGCGGCAAGAGGAGCGGCGGCGGCGGCGGCGGCGAGCAGCGGACGACGATCGTGGTGTCGCCGGACGGGACGGGGCACTCGCGCACCGTGCAGGGCGCCGTCGACATGGTCCCCGCCGGCAACACGAGGAGGGTCAAGATCGTCGTCAGGCCGGGCGTCTACAGGGAGAAGGTGACGGTGCCGATCACGAAGCCGTTCGTGTCGCTGATCGGCATGGGCACCGGCCACACGGTGATCACGTGGCACTCGCGCGCGTCCGACGTCGGCGCGTCGGGCCACCAGGTGGGCACCTTCTACTCCGCCTCCGTCGCCGTCGAGGCCGACTACTTCTGCGCCAGCCACATCACCTTCGAGAACTCGGCGGCGGCGGCGGCGCCGGGGGCGGTGGGGCAGCAGGCGGTGGCGCTGAGGCTGTCCGGCGACAAGACGGTGCTGTACAAGTGCAGGATACTGGGGACGCAGGACACGCTGTTCGACAACATCGGGAGGCACTACCTCTACAACTGCGACATCCAGGGCTCCATCGATTTCATCTTTGGCAACGCAAGGTCCTTGTACCAGGGTTGCACGCTGCACGCCGTGGCGACGAGCTACGGCGCGATCGCGGCGTCGCAGCGGAGCTCGCCGTCGGAGGAGTCCGGGTTCAGCTTCGTCGGCTGCCGGCTCACCGGCTCCGGCATGCTCTACCTGGGAAGAGCATGGGGCAAGTACTCCAGAGTGGTGTACTCCTACTGTGACCTCAGTGGCATCATCGTCCCCCAGGGATGGAGCGACTGGGGTGATCAATCAAGAACAAAGTGATCAACTTTCCTGCCATTTAATCACACACTCAATTTGCTGCTCTTGATTAAAATTACAGTTACAATTATAATTGCAGCTACTCTGTCAGGTTCACATGGCATATTAATATTATTGATCGAAGAGATTATATTTTAGCTGAATTTTACTAGTTACCAACTTACCATCCTCGATGATCAAATGGCATAGGAAGTGGTTGGGAGTTGCATTGCAGGCTCACCAAACAGTCTTGATAGGGGAATTCAGTTACCACATGTGACAAGGCTGTTACCAAATGAGTTCCTTTTCTTTTCTGAAATCCTAGAGACGATACTGCCATATCATATCCGTCAGAAAATGACAGAGAATGTGTCTGAATCTTCTGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGGGGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACGCTCACCTACGACGAGGCGCGGCCGTTCATCGGCCGGAGCTTCATCAACGGCGAGCAGTGGCTCCGGCTGTAGATCATCGCCGATTCTTCACAAGTTCAGAAAGTTCAGACTGCTGCTGGTTCCTTCTCCACTGCAGTCTGCAGATAGAACATGTACCTAGTAGATATAATAGCTGACATGTAACGATGTACCATGTAACAAACTTTGACATACATCCATATGTAGTGAGATGAG]

[+] EMBL AK106797             [AAATTAATCCGCGTGGTTAATTAGCTCTAGCTAGAGATCGGTAGCTCTCGACTAGTTGGACATGGCCGCCACGGGCGTGCTCGTCGTCGTTGTGGCGCTCGTGTTCGCCGTGACGGTGGCTGGCGGCGGCGGCGCCGGAGTAGGAGGTGATGGCGGGTTCATCACGTGGGAGGACCTGAGCATGCCGGCCGGGGCGGCGCGGAGCAGCACGTGGGACGACACGGCCGGCGGTGGCGGCGGCAAGAGGAGCGGCGGCGGCGGCGGCGGCGAGCAGCGGACGACGATCGTGGTGTCGCCGGACGGGACGGGGCACTCGCGCACCGTGCAGGGCGCCGTCGACATGGTCCCCGCCGGCAACACGAGGAGGGTCAAGATCGTCGTCAGGCCGGGCGTCTACAGGGAGAAGGTGACGGTGCCGATCACGAAGCCGTTCGTGTCGCTGATCGGCATGGGCACCGGCCACACGGTGATCACGTGGCACTCGCGCGCGTCCGACGTCGGCGCGTCGGGCCACCAGGTGGGCACCTTCTACTCCGCCTCCGTCGCCGTCGAGGCCGACTACTTCTGCGCCAGCCACATCACCTTCGAGAACTCGGCGGCGGCGGCGGCGCCGGGGGCGGTGGGGCAGCAGGCGGTGGCGCTGAGGCTGTCCGGCGACAAGACGGTGCTGTACAAGTGCAGGATACTGGGGACGCAGGACACGCTGTTCGACAACATCGGGAGGCACTACCTCTACAACTGCGACATCCAGGGCTCCATCGATTTCATCTTTGGCAACGCAAGGTCCTTGTACCAGGGTTGCACGCTGCACGCCGTGGCGACGAGCTACGGCGCGATCGCGGCGTCGCAGCGGAGCTCGCCGTCGGAGGAGTCCGGGTTCAGCTTCGTCGGCTGCCGGCTCACCGGCTCCGGCATGCTCTACCTGGGAAGAGCATGGGGCAAGTACTCCAGAGTGGTGTACTCCTACTGTGACCTCAGTGGCATCATCGTCCCCCAGGGATGGAGCGACTGGGGTGATCAATCAAGAACAAAGTGATCAACTTTCCTGCCATTTAATCACACACTCAATTTGCTGCTCTTGATTAAAATTACAGTTACAATTATAATTGCAGCTACTCTGTCAGGTTCACATGGCATATTAATATTATTGATCGAAGAGATTATATTTTAGCTGAATTTTACTAGTTACCAACTTACCATCCTCGATGATCAAATGGCATAGGAAGTGGTTGGGAGTTGCATTGCAGGCTCACCAAACAGTCTTGATAGGGGAATTCAGTTACCACATGTGACAAGGCTGTTACCAAATGAGTTCCTTTTCTTTTCTGAAATCCTAGAGACGATACTGCCATATCATATCCGTCAGAAAATGACAGAGAATGTGTCTGAATCTTCTGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGGGGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACGCTCACCTACGACGAGGCGCGGCCGTTCATCGGCCGGAGCTTCATCAACGGCGAGCAGTGGCTCCGGCTGTAGATCATCGCCGATTCTTCACAAGTTCAGAAAGTTCAGACTGCTGCTGGTTCCTTCTCCACTGCAGTCTGCAGATAGAACATGTACCTAGTAGATATAATAGCTGACATGTAACGATGTACCATGTAACAAACTTTGACATACATCCATATGTAGTGAGATGAG]
[+] EMBL AA750770             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGTGACAAGGCTGTTACCAAATGAGTTCCTTTTCTTTTCTGAAATCCTAGAGACGATACTGCCATATCATATCCGTCAGAAAATGACAGAGAATGTGTCTGAATCTTCTGACAGGACGGTCGTGTTCGGGGAGTACAACTCGAAAGGGCCAGGCG GAGCACGAAGCAGAGGGTGCCGTGGTCGCGGAC CTCACCTACGACGAGGCGCGGC                                                                                                                                                                                                                    ]




>consensus_4780#0
AAATTAATCCGCGTGGTTAATTAGCTCTAGCTAGAGATCGGTAGCTCTCGACTAGTTGGA
CATGGCCGCCACGGGCGTGCTCGTCGTCGTTGTGGCGCTCGTGTTCGCCGTGACGGTGGC
TGGCGGCGGCGGCGCCGGAGTAGGAGGTGATGGCGGGTTCATCACGTGGGAGGACCTGAG
CATGCCGGCCGGGGCGGCGCGGAGCAGCACGTGGGACGACACGGCCGGCGGTGGCGGCGG
CAAGAGGAGCGGCGGCGGCGGCGGCGGCGAGCAGCGGACGACGATCGTGGTGTCGCCGGA
CGGGACGGGGCACTCGCGCACCGTGCAGGGCGCCGTCGACATGGTCCCCGCCGGCAACAC
GAGGAGGGTCAAGATCGTCGTCAGGCCGGGCGTCTACAGGGAGAAGGTGACGGTGCCGAT
CACGAAGCCGTTCGTGTCGCTGATCGGCATGGGCACCGGCCACACGGTGATCACGTGGCA
CTCGCGCGCGTCCGACGTCGGCGCGTCGGGCCACCAGGTGGGCACCTTCTACTCCGCCTC
CGTCGCCGTCGAGGCCGACTACTTCTGCGCCAGCCACATCACCTTCGAGAACTCGGCGGC
GGCGGCGGCGCCGGGGGCGGTGGGGCAGCAGGCGGTGGCGCTGAGGCTGTCCGGCGACAA
GACGGTGCTGTACAAGTGCAGGATACTGGGGACGCAGGACACGCTGTTCGACAACATCGG
GAGGCACTACCTCTACAACTGCGACATCCAGGGCTCCATCGATTTCATCTTTGGCAACGC
AAGGTCCTTGTACCAGGGTTGCACGCTGCACGCCGTGGCGACGAGCTACGGCGCGATCGC
GGCGTCGCAGCGGAGCTCGCCGTCGGAGGAGTCCGGGTTCAGCTTCGTCGGCTGCCGGCT
CACCGGCTCCGGCATGCTCTACCTGGGAAGAGCATGGGGCAAGTACTCCAGAGTGGTGTA
CTCCTACTGTGACCTCAGTGGCATCATCGTCCCCCAGGGATGGAGCGACTGGGGTGATCA
ATCAAGAACAAAGTGATCAACTTTCCTGCCATTTAATCACACACTCAATTTGCTGCTCTT
GATTAAAATTACAGTTACAATTATAATTGCAGCTACTCTGTCAGGTTCACATGGCATATT
AATATTATTGATCGAAGAGATTATATTTTAGCTGAATTTTACTAGTTACCAACTTACCAT
CCTCGATGATCAAATGGCATAGGAAGTGGTTGGGAGTTGCATTGCAGGCTCACCAAACAG
TCTTGATAGGGGAATTCAGTTACCACATGTGACAAGGCTGTTACCAAATGAGTTCCTTTT
CTTTTCTGAAATCCTAGAGACGATACTGCCATATCATATCCGTCAGAAAATGACAGAGAA
TGTGTCTGAATCTTCTGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGG
GGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACGCTCACCTACGACGAGGCGCGGCC
GTTCATCGGCCGGAGCTTCATCAACGGCGAGCAGTGGCTCCGGCTGTAGATCATCGCCGA
TTCTTCACAAGTTCAGAAAGTTCAGACTGCTGCTGGTTCCTTCTCCACTGCAGTCTGCAG
ATAGAACATGTACCTAGTAGATATAATAGCTGACATGTAACGATGTACCATGTAACAAAC
TTTGACATACATCCATATGTAGTGAGATGAG

consensusID : consensus_4780#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence

                              [TGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGGGGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACNTCACCTACGACGANCNNCGGCGTTCATNNGCCTTCATCAAGGCGGCGCTAGCAGTGGCTCCGGCTGTAGATCATCGCGATTCTTACCAGTTCAGAAGTCAGACTGCTG]

[+] EMBL AA750006             [TGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGGGGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACNTCACCTACGACGANCNNCGGCGTTCATNNGCCTTCATCAAGGCGGCGCTAGCAGTGGCTCCGGCTGTAGATCATCGCGATTCTTACCAGTTCAGAAGTCAGACTGCTG]




>consensus_4780#1
TGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGGGGCGAGCACGAAGCA
GAGGGTGCCGTGGTCGCGGACNTCACCTACGACGANCNNCGGCGTTCATNNGCCTTCATC
AAGGCGGCGCTAGCAGTGGCTCCGGCTGTAGATCATCGCGATTCTTACCAGTTCAGAAGT
CAGACTGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4780#0      AAATTAATCCGCGTGGTTAATTAGCTCTAGCTAGAGATCGGTAGCTCTCGACTAGTTGGA 60
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      CATGGCCGCCACGGGCGTGCTCGTCGTCGTTGTGGCGCTCGTGTTCGCCGTGACGGTGGC 120
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      TGGCGGCGGCGGCGCCGGAGTAGGAGGTGATGGCGGGTTCATCACGTGGGAGGACCTGAG 180
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      CATGCCGGCCGGGGCGGCGCGGAGCAGCACGTGGGACGACACGGCCGGCGGTGGCGGCGG 240
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      CAAGAGGAGCGGCGGCGGCGGCGGCGGCGAGCAGCGGACGACGATCGTGGTGTCGCCGGA 300
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      CGGGACGGGGCACTCGCGCACCGTGCAGGGCGCCGTCGACATGGTCCCCGCCGGCAACAC 360
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      GAGGAGGGTCAAGATCGTCGTCAGGCCGGGCGTCTACAGGGAGAAGGTGACGGTGCCGAT 420
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      CACGAAGCCGTTCGTGTCGCTGATCGGCATGGGCACCGGCCACACGGTGATCACGTGGCA 480
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      CTCGCGCGCGTCCGACGTCGGCGCGTCGGGCCACCAGGTGGGCACCTTCTACTCCGCCTC 540
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      CGTCGCCGTCGAGGCCGACTACTTCTGCGCCAGCCACATCACCTTCGAGAACTCGGCGGC 600
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      GGCGGCGGCGCCGGGGGCGGTGGGGCAGCAGGCGGTGGCGCTGAGGCTGTCCGGCGACAA 660
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      GACGGTGCTGTACAAGTGCAGGATACTGGGGACGCAGGACACGCTGTTCGACAACATCGG 720
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      GAGGCACTACCTCTACAACTGCGACATCCAGGGCTCCATCGATTTCATCTTTGGCAACGC 780
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      AAGGTCCTTGTACCAGGGTTGCACGCTGCACGCCGTGGCGACGAGCTACGGCGCGATCGC 840
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      GGCGTCGCAGCGGAGCTCGCCGTCGGAGGAGTCCGGGTTCAGCTTCGTCGGCTGCCGGCT 900
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      CACCGGCTCCGGCATGCTCTACCTGGGAAGAGCATGGGGCAAGTACTCCAGAGTGGTGTA 960
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      CTCCTACTGTGACCTCAGTGGCATCATCGTCCCCCAGGGATGGAGCGACTGGGGTGATCA 1020
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      ATCAAGAACAAAGTGATCAACTTTCCTGCCATTTAATCACACACTCAATTTGCTGCTCTT 1080
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      GATTAAAATTACAGTTACAATTATAATTGCAGCTACTCTGTCAGGTTCACATGGCATATT 1140
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      AATATTATTGATCGAAGAGATTATATTTTAGCTGAATTTTACTAGTTACCAACTTACCAT 1200
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      CCTCGATGATCAAATGGCATAGGAAGTGGTTGGGAGTTGCATTGCAGGCTCACCAAACAG 1260
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      TCTTGATAGGGGAATTCAGTTACCACATGTGACAAGGCTGTTACCAAATGAGTTCCTTTT 1320
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      CTTTTCTGAAATCCTAGAGACGATACTGCCATATCATATCCGTCAGAAAATGACAGAGAA 1380
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      TGTGTCTGAATCTTCTGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGG 1440
consensus_4780#1      ---------------TGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGG 45
                                     *********************************************

consensus_4780#0      GGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACGCTCACCTACGACGAGGCGCGGCC 1500
consensus_4780#1      GGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACN-TCACCTACGACGANCNNCGGC- 103
                      ************************************  *************    **** 

consensus_4780#0      GTTCATCGGCCGGAGCTTCATCAA--CGGCG--AGCAGTGGCTCCGGCTGTAGATCATCG 1556
consensus_4780#1      GTTCATNNGCC-----TTCATCAAGGCGGCGCTAGCAGTGGCTCCGGCTGTAGATCATCG 158
                      ******  ***     ********  *****  ***************************

consensus_4780#0      CCGATTCTTCACAAGTTCAGAAAGTTCAGACTGCTGCTGGTTCCTTCTCCACTGCAGTCT 1616
consensus_4780#1      C-GATTCTT-ACCAGTTCAGAAG--TCAGACTGCTG------------------------ 190
                      * ******* ** *********   ***********                        

consensus_4780#0      GCAGATAGAACATGTACCTAGTAGATATAATAGCTGACATGTAACGATGTACCATGTAAC 1676
consensus_4780#1      ------------------------------------------------------------
                                                                                  

consensus_4780#0      AAACTTTGACATACATCCATATGTAGTGAGATGAG 1711
consensus_4780#1      -----------------------------------