cluster # 4786

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Oryza sativa
cluster # 4786 cluster # 4786 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4786#0 length = 884 sequences # 2

consensus_4786#1 length = 484 sequences # 1

consensusID : consensus_4786#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 884
fasta sequence

                              [AGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGTTTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGAAATGAA-GGTAATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAATGGCTAGAGGAAAATTTTTAGGGCTATTTGCAATTCCACAACCATAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGATGGTACTAATTATTCAGTTTCTTCTATTGAT-CCTGAAAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTATCATCAAGAGAATTGAAGATTCTATTTTTTTTTTCTTAGGATCTGCAGGGAAAATTATTCAGATAGTGGAACAGGTTCAAGTAGCCATTTGAAACTCAACACAACTTTATATCAAGAACAAATGAACAATGAATGGTAGATCCAATCTTCAATGGAGAATCATGGACCACCGAATTGGGCTATCTTCCCGAGCTATCTACGACTACATGCATAGTATAATAGATGCAATCATGCAAGTGTGCAACTAGTAGTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGCATGTAATGGTCCTGGTGTATAATGCCATGGCACACTCAACTTGCATTTAAACAATGCTAGTCCCT]

[+] EMBL AK103663             [AGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGTTTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGAAATGAA GGTAATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAATGGCTAGAGGAAAATTTTTAGGGCTATTTGCAATTCCACAACCATAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGATGGTACTAATTATTCAGTTTCTTCTATTGAT CCTGAAAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTATCATCAAGAGAATTGAAGATTCTATTTTTTTTTTCTTAGGATCTGCAGGGAAAATTATTCAGATAGTGGAACAGGTTCAAGTAGCCATTTGAAACTCAACACAACTTTATATCAAGAACAAATGAACAATGAATGGTAGATCCAATCTTCAATGGAGAATCATGGACCACCGAATTGGGCTATCTTCCCGAGCTATCTACGACTACATGCATAGTATAATAGATGCAATCATGCAAGTGTGCAACTAGTAGTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGCATGTAATGGTCCTGGTGTATAATGCCATGGCACACTCAACTTGCATTTAAACAATGCTAGTCCCT]
[+] EMBL CF330194             [   AACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGTTTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGAAATGAAGGGTAATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAATGGCTAGAGGAAAATTTTTAGGGCTATTTGCAATTCCACAACCATAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGATGGTACTAATTATTCAGTTTCTTCTATTGATCCCTG AAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTATCATCAAGAGAATTGAAGATTCTATT                                                                                                                                                                                                                                                                                                                                      ]




>consensus_4786#0
AGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTT
TGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGTTTTCTCTCCTTTTTCAGATG
CATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGC
TGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTT
GGTCACGTTCTACCGGTCTTTTTCGATGGAAATGAAGGTAATTGGAGGAGTTCTATCTGT
TTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAATGGCTAGAGGAAAATTTTTAGG
GCTATTTGCAATTCCACAACCATAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAG
TTAGGAGCTGGTTATGATGGTACTAATTATTCAGTTTCTTCTATTGATCCTGAAAGTTCT
ATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTATCATCAAG
AGAATTGAAGATTCTATTTTTTTTTTCTTAGGATCTGCAGGGAAAATTATTCAGATAGTG
GAACAGGTTCAAGTAGCCATTTGAAACTCAACACAACTTTATATCAAGAACAAATGAACA
ATGAATGGTAGATCCAATCTTCAATGGAGAATCATGGACCACCGAATTGGGCTATCTTCC
CGAGCTATCTACGACTACATGCATAGTATAATAGATGCAATCATGCAAGTGTGCAACTAG
TAGTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGCATGTAATGGTCCTGGTGTATA
ATGCCATGGCACACTCAACTTGCATTTAAACAATGCTAGTCCCT

consensusID : consensus_4786#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [CCTCATTTGCAGAAAGGGTTAGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGTTTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGGAAATGAAGGTAATTNGAGGAGTTCTATCTGTTTGATGGGATTCAGGACCAAAATCCGGATTCCACAAAATGGCTAAAGGNAATTTTAGGGCTATTTGCAATNCACAACCATAAGNTGGCCACTGNAGTCTCCAGTAAAGAGTAGGGCTGTATGTGGACAATATCAGTTNTCATTNNCCGAGTCATGCAGGAAGA]

[+] EMBL C25855               [CCTCATTTGCAGAAAGGGTTAGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGTTTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGGAAATGAAGGTAATTNGAGGAGTTCTATCTGTTTGATGGGATTCAGGACCAAAATCCGGATTCCACAAAATGGCTAAAGGNAATTTTAGGGCTATTTGCAATNCACAACCATAAGNTGGCCACTGNAGTCTCCAGTAAAGAGTAGGGCTGTATGTGGACAATATCAGTTNTCATTNNCCGAGTCATGCAGGAAGA]




>consensus_4786#1
CCTCATTTGCAGAAAGGGTTAGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTA
ACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGT
TTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCT
GAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGG
TGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGGAAATGAAGGT
AATTNGAGGAGTTCTATCTGTTTGATGGGATTCAGGACCAAAATCCGGATTCCACAAAAT
GGCTAAAGGNAATTTTAGGGCTATTTGCAATNCACAACCATAAGNTGGCCACTGNAGTCT
CCAGTAAAGAGTAGGGCTGTATGTGGACAATATCAGTTNTCATTNNCCGAGTCATGCAGG
AAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4786#0      --------------------AGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTA 40
consensus_4786#1      CCTCATTTGCAGAAAGGGTTAGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTA 60
                                          ****************************************

consensus_4786#0      ACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGT 100
consensus_4786#1      ACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGT 120
                      ************************************************************

consensus_4786#0      TTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCT 160
consensus_4786#1      TTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCT 180
                      ************************************************************

consensus_4786#0      GAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGG 220
consensus_4786#1      GAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGG 240
                      ************************************************************

consensus_4786#0      TGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGG-AAATGAAGGT 279
consensus_4786#1      TGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGGAAATGAAGGT 300
                      ************************************************* **********

consensus_4786#0      AATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAAT 339
consensus_4786#1      AATTNGAGGAGTTCTATCTGTTTGATGGGATTCAGGACCAAAATCCGGATTCCACAAAAT 360
                      **** *********************** ****** *********** ************

consensus_4786#0      GGCTAGAGGAAAATTTTTAGGGCTATTTGCAATTCCACAACCATAAGCATGGCCAACTGG 399
consensus_4786#1      GGCTAAAGGNAA--TTTTAGGGCTATTTGCAATNC-ACAACCATAAGN-TGGCCA-CTG- 414
                      ***** *** **  ******************* * ***********  ****** *** 

consensus_4786#0      TAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGATGGTACTAATTATTCAGTTTCT 459
consensus_4786#1      -NAGTCTCCAGTAAAGAGTAG-----GGCTG--TATGTGGACAATATCAGTTNTCATTNN 466
                          ******   ** ** **      ****  ****  *  * **    **    **  

consensus_4786#0      TCTATTGATCCTGAAAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCC 519
consensus_4786#1      CCGAGTCATGCAGGAAGA------------------------------------------ 484
                       * * * ** * * ***                                           

consensus_4786#0      ATGAAAACAATTATCATCAAGAGAATTGAAGATTCTATTTTTTTTTTCTTAGGATCTGCA 579
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      GGGAAAATTATTCAGATAGTGGAACAGGTTCAAGTAGCCATTTGAAACTCAACACAACTT 639
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      TATATCAAGAACAAATGAACAATGAATGGTAGATCCAATCTTCAATGGAGAATCATGGAC 699
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      CACCGAATTGGGCTATCTTCCCGAGCTATCTACGACTACATGCATAGTATAATAGATGCA 759
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      ATCATGCAAGTGTGCAACTAGTAGTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGC 819
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      ATGTAATGGTCCTGGTGTATAATGCCATGGCACACTCAACTTGCATTTAAACAATGCTAG 879
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      TCCCT 884
consensus_4786#1      -----