These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1061 fasta sequence [GATGTGAATGGAAACCAAATTGAAGGTAAACTACCTAGATCACTATCATACTGCCAATATTTGGAGCTCCTGGATGCTGGAAATAATCAGATTGTTGATTCTTTTCCATTTTGGTTGGGTAAACTTCCAAATCTCCGAGTCCTTGTCTTAAGATCCAACAAACTCAATGGCACAATAAGGGGTCTTAAAGGTTGTCACCAAAATTGTAATCACTTCAAAAGGTTGCAAATAATTGATTTGGCCTCCAACCATTTCTCTGGCAACATACATCCAGAATGGTTTGAGCATTTTCAATCAATGATGGAAAATGACAACGATGAGGGACACATATTAGAGCATACCACAAACACAAAAATACCATTGCTCTATCAGGATATTACGGTTGTCAATTACAAAGGGGGCACTCTTATGTTCACTAAAATCCTAACCACCTTCAAAGTAATTGATCTCTCAGATAACTCATTTGGTGGTCCTATTCCAAAGTCATTGGGGAAGCTTGTTTCACTACGTGGACTTAACCTGTCACACAATGCCTTCACAGGACACATTCCATCGCAGCTTAATTCTCTGACTCAGCTGGAGTCATTGGATCTTTCTTGGAACAAACTCTCAGGGGAAATCCCTCCTGAGTTAGCTTCTCTAACTTCTCTTGCTTGGTTGAATCTTTCGTACAACAACTTGACCAGAAGAATACCGCAGGGTAACCAGTTCGGGTCATTTAGCAACAGCTCCTTTGAAGGTAATGTCAACCTCTGTGGAAAGCCACTCTCTAAACAATGTGATACTCCAGGCTCAACATCTCCAAGTGCATCAGCTCCTTCAGGTACCAACAGTTTCTGGCAGGACAGACTTGGCGTGATCCTTTTGTTCATCTTTTCTGGCCTGGGGTTCACAGTGGGCTTCATATTGGCAGTCTGGTTCGAATCATTGTGCCACATAGAACGATGGAATCGCAAAAAACGATGATTGTTAGTATACACTATATGTATGGTGTTTATCCACCTACGGACATGATATATGTGTATGTGTGTACTCGTAATTAGTGAGAATTTAAATTCATT] [+] EMBL AK108785 [GATGTGAATGGAAACCAAATTGAAGGTAAACTACCTAGATCACTATCATACTGCCAATATTTGGAGCTCCTGGATGCTGGAAATAATCAGATTGTTGATTCTTTTCCATTTTGGTTGGGTAAACTTCCAAATCTCCGAGTCCTTGTCTTAAGATCCAACAAACTCAATGGCACAATAAGGGGTCTTAAAGGTTGTCACCAAAATTGTAATCACTTCAAAAGGTTGCAAATAATTGATTTGGCCTCCAACCATTTCTCTGGCAACATACATCCAGAATGGTTTGAGCATTTTCAATCAATGATGGAAAATGACAACGATGAGGGACACATATTAGAGCATACCACAAACACAAAAATACCATTGCTCTATCAGGATATTACGGTTGTCAATTACAAAGGGGGCACTCTTATGTTCACTAAAATCCTAACCACCTTCAAAGTAATTGATCTCTCAGATAACTCATTTGGTGGTCCTATTCCAAAGTCATTGGGGAAGCTTGTTTCACTACGTGGACTTAACCTGTCACACAATGCCTTCACAGGACACATTCCATCGCAGCTTAATTCTCTGACTCAGCTGGAGTCATTGGATCTTTCTTGGAACAAACTCTCAGGGGAAATCCCTCCTGAGTTAGCTTCTCTAACTTCTCTTGCTTGGTTGAATCTTTCGTACAACAACTTGACCAGAAGAATACCGCAGGGTAACCAGTTCGGGTCATTTAGCAACAGCTCCTTTGAAGGTAATGTCAACCTCTGTGGAAAGCCACTCTCTAAACAATGTGATACTCCAGGCTCAACATCTCCAAGTGCATCAGCTCCTTCAGGTACCAACAGTTTCTGGCAGGACAGACTTGGCGTGATCCTTTTGTTCATCTTTTCTGGCCTGGGGTTCACAGTGGGCTTCATATTGGCAGTCTGGTTCGAATCATTGTGCCACATAGAACGATGGAATCGCAAAAAACGATGATTGTTAGTATACACTATATGTATGGTGTTTATCCACCTACGGACATGATATATGTGTATGTGTGTACTCGTAATTAGTGAGAATTTAAATTCATT] consensusID : consensus_4797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 929 fasta sequence [TAGTGGCGCCATCTATAAGCAATGTGCTCTTTGCGCTAACCTGTGCGGTGGGCCGGTGGCGCATTCTCTTGAACACCTGGTGGCCCTCGTGGTGTGGTGGTGGAAGAAGAGGGCGATGACGAAGCAGACGGACAGGACGGGACATCCCAGTAGCGATCCATTGATTGCCGACTGCAATATCTGCTTGAAAAGTGCAACATCTGGAACCTTGGATACCATCTCACCTTCCTCTCCGCCCCCCTCATCCTCACCCCCTTACAACCTCATGCCCCATTCCGGCGAGGTCCAAGTGGTGGCGGTTATCACGGATTGGGATGTGCGGGACCGCCTGAGGTGGGGGAGAAGGACAGCGAGGGGTGGAAGTCTCGCCGCAGCTGGTGGCGGCGCCGCCGCAGGCCCTCCAGGGCGGCATGCGCTTCAGCCTTCAGGCAGGGCGTGCACCATGCAGGAGAGGGAGATCGTTCCGAGCTCGCCAGGAGGATGGCCGGGAGAGATCCCCGCCCTTGTGCAGACGCTGCCGCCTCTGACCCGCCGCTGCACATCTTCAATCGCCGGCCGGGTCGCCGGGAAAGCAGCCGGAGGCGGGACATGGCCGCGGCCCCGTCTGGTGTTCGCCGCAACATAACAGGCTTTCCGTGGGCCTCCAAACATCTCGGCCCGTACATGTCGAAGTAGTTGACCTAGTAAACGGCCCACTGCCTAGACAGCACATGGACACATGGATGGGCCGACAACATCACGGCCTGTTCAGAGACCGCACCATCGGTCTATCGCGCTCACCCGCCCAGTCACGGTCTCACGGAGGCGTAGAAGTGATCGAAGTGTTAAATCCTAGATTTCACACTGCTAATTGTATTTCTTTTAATGGTAGATGTACACGTTGACGGCAAGGCGCATGTAATAATTTTATTAATCTTAAGATATACCGA] [+] EMBL AK108484 [TAGTGGCGCCATCTATAAGCAATGTGCTCTTTGCGCTAACCTGTGCGGTGGGCCGGTGGCGCATTCTCTTGAACACCTGGTGGCCCTCGTGGTGTGGTGGTGGAAGAAGAGGGCGATGACGAAGCAGACGGACAGGACGGGACATCCCAGTAGCGATCCATTGATTGCCGACTGCAATATCTGCTTGAAAAGTGCAACATCTGGAACCTTGGATACCATCTCACCTTCCTCTCCGCCCCCCTCATCCTCACCCCCTTACAACCTCATGCCCCATTCCGGCGAGGTCCAAGTGGTGGCGGTTATCACGGATTGGGATGTGCGGGACCGCCTGAGGTGGGGGAGAAGGACAGCGAGGGGTGGAAGTCTCGCCGCAGCTGGTGGCGGCGCCGCCGCAGGCCCTCCAGGGCGGCATGCGCTTCAGCCTTCAGGCAGGGCGTGCACCATGCAGGAGAGGGAGATCGTTCCGAGCTCGCCAGGAGGATGGCCGGGAGAGATCCCCGCCCTTGTGCAGACGCTGCCGCCTCTGACCCGCCGCTGCACATCTTCAATCGCCGGCCGGGTCGCCGGGAAAGCAGCCGGAGGCGGGACATGGCCGCGGCCCCGTCTGGTGTTCGCCGCAACATAACAGGCTTTCCGTGGGCCTCCAAACATCTCGGCCCGTACATGTCGAAGTAGTTGACCTAGTAAACGGCCCACTGCCTAGACAGCACATGGACACATGGATGGGCCGACAACATCACGGCCTGTTCAGAGACCGCACCATCGGTCTATCGCGCTCACCCGCCCAGTCACGGTCTCACGGAGGCGTAGAAGTGATCGAAGTGTTAAATCCTAGATTTCACACTGCTAATTGTATTTCTTTTAATGGTAGATGTACACGTTGACGGCAAGGCGCATGTAATAATTTTATTAATCTTAAGATATACCGA] consensusID : consensus_4797#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [GGGCGAGNAAGGGTTAGACAGTTTGGGCTACAGCAGCGNGGAATCATATCAATATTCATGTGCACCTACCCCTTGGCGTGGATGAGCCCCTTGTCTCGTCCACTTGGAACAAGCTCTCAGGGGAAATCCCTCNTGAGTTAGCTTCTCTANCTTCTCTTGCTTGGTTGAATCTTTCATAGAACAACTTGACAGGAAGAATACTGCAGGGCAACCAGTTCGGGTCATTTAGCAACAGCTCCTTTGAAGGTAATGTCAACCTATGTGGAAGGCCACTCTCTAAACAATGTGATACTCCAGGCTCANCATCTCCAAGTGAATCAGCTCCTTCAGATACCAACAGTTTCTGGCAGGACAGACTTGGTGTGATCCTTTTGTTCATCTTGTCTGGCCTGGGGTTCACAGTGGGCTTCATATTGGCAGTCTGTGCAGTGGGCCGGTGGCGCATTCTCTCGAACANCCGGTGGCCCTCGTGGTGTGGTGGTGGAAGAAGAGGGCGATGNCGAAGCAGACGGACGGGACGGGNCATCCCAGTAGCGATCCATTGATTGCCGACTGCAATATCTGCTTGAAAAGTGCAACATCTGGAACCTTGGATACCATCTCACCTTCCTCTCCGCCCACCTC] [-] EMBL CA765320 [GGGCGAGNAAGGGTTAGACAGTTTGGGCTACAGCAGCGNGGAATCATATCAATATTCATGTGCACCTACCCCTTGGCGTGGATGAGCCCCTTGTCTCGTCCACTTGGAACAAGCTCTCAGGGGAAATCCCTCNTGAGTTAGCTTCTCTANCTTCTCTTGCTTGGTTGAATCTTTCATAGAACAACTTGACAGGAAGAATACTGCAGGGCAACCAGTTCGGGTCATTTAGCAACAGCTCCTTTGAAGGTAATGTCAACCTATGTGGAAGGCCACTCTCTAAACAATGTGATACTCCAGGCTCANCATCTCCAAGTGAATCAGCTCCTTCAGATACCAACAGTTTCTGGCAGGACAGACTTGGTGTGATCCTTTTGTTCATCTTGTCTGGCCTGGGGTTCACAGTGGGCTTCATATTGGCAGTCTGTGCAGTGGGCCGGTGGCGCATTCTCTCGAACANCCGGTGGCCCTCGTGGTGTGGTGGTGGAAGAAGAGGGCGATGNCGAAGCAGACGGACGGGACGGGNCATCCCAGTAGCGATCCATTGATTGCCGACTGCAATATCTGCTTGAAAAGTGCAACATCTGGAACCTTGGATACCATCTCACCTTCCTCTCCGCCCACCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4797#0 GATGTGAATGGAAACCAAATTGAAGGTAAACTACCTAGATCACTATCATACTGCCAATAT 60 consensus_4797#2 ------------------------------------------------------------ consensus_4797#1 ------------------------------------------------------------ consensus_4797#0 TTGGAGCTCCTGGATGCTGGAAATAATCAGATTGTTGATTCTTTTCCATTTTGGTTGGGT 120 consensus_4797#2 ------------------------------------------------------------ consensus_4797#1 ----------------------------------------------------TAGTGGCG 8 consensus_4797#0 AAACTTCCAAATCTCCGAGTCCTTGTCTTAAGATCCAACA-AACTCAATGGCACAATAAG 179 consensus_4797#2 ------------------------------------------------------------ consensus_4797#1 CCATCTATAAGCAATGTGCTCTTTGCGCTAACCTGTGCGGTGGGCCGGTGGCGCATTCTC 68 consensus_4797#0 GGGTCTTAAAGGTTGTCACCAAAATTGTAATCACTTCAAAAGGTTGCAAATAATTGATTT 239 consensus_4797#2 ------------------------------------------------------------ consensus_4797#1 TTGAACACCTGGTGGCCCTCGTGGT-GTGGTGGTGGAAGAAGAGGGCGA-TGACGAAGCA 126 consensus_4797#0 GGCCTCCAACCATTTCTCTGGCAACATACATCCAGAATGGTTTGAGCATTTTCAATCAAT 299 consensus_4797#2 ------------------------------------------------------------ consensus_4797#1 GACGGACAGGACGGGACATCCCAGTAGCGATCC---ATTGATTGC-CGACTGCAATATCT 182 consensus_4797#0 GATGGAAAATGACAACGATGAGGGACACATATTAGAGCATACCACAAACACAAAAATACC 359 consensus_4797#2 ------------------------------------------------------------ consensus_4797#1 GCTTGAAAAGTGCAACATCTGGAACCTTGGAT---ACCATCTCACCTTCCTCTCCGCCCC 239 consensus_4797#0 ATTGCTCTATCAGGATATTACGGTTGTCAATTACAAAGGGGGCACTCTTATGTTCACTAA 419 consensus_4797#2 ------------------------------------------------------------ consensus_4797#1 CCTCATCC-TCACCCCCTTACAACC-TCATGCCCCATTCCGGCGAGGTCCAAGTGGTGGC 297 consensus_4797#0 AATCCTAACCACCTTCAAAGTAATTGATC-TCTCAGATAACTCATTTGGTGGTCCTATTC 478 consensus_4797#2 ------------------------------------------------------------ consensus_4797#1 GGTTATCACGGATTGGGATGTGCGGGACCGCCTGAGGTGGGGGAGAAGGACAGCGAGGGG 357 consensus_4797#0 CAAAGTCATTGGGGAAGCTTGTTTCACTACGTGGACTTAACCTGTCACACAATGCCTTCA 538 consensus_4797#2 ----------GGGCGAGNAAGGGTTA----GACAGTTTGGGCTACAGCAGCGNGGAATCA 46 consensus_4797#1 TGGAAGTCTCGCCGCAGCTGGTGGCG--GCGCCGCCGCAGGCCCTCCAGGGCGGCATGCG 415 * ** * * * * * consensus_4797#0 CAGGACACATTCCATCGCAGCTTAATTCTCTGACTCAGCTGGAGTCATTGGATCTTTC-- 596 consensus_4797#2 TATCA-ATATTCATGTGCACCT--ACCCCTTGGCGTGGATGAGCCCCTTGTCTCGTCCAC 103 consensus_4797#1 CTTCA-GCCTTCAGGCAGGGCGT-GCACCATGCAGGAGAGGGAGATCGTTCCGAGCTCGC 473 * *** * * ** * * * * consensus_4797#0 TTGGAACAAACTCTCAGGGGAAATCCCTCCTGAGTTAGCTTCTCTAACTTCTCTTGCTTG 656 consensus_4797#2 TTGGAACAAGCTCTCAGGGGAAATCCCTCNTGAGTTAGCTTCTCTANCTTCTCTTGCTTG 163 consensus_4797#1 CAGGAGGATGGCCGGGAGAGATCCCCGCCCTTGTGCAGACGCTGCCGCCTCTGACCCGCC 533 *** * * * ** ** * * ** ** * *** * consensus_4797#0 GTTGAATCTTTCGTACAACAACTTGACCAGAAGAATACCGCAGGGTAACCAGTT-CGGGT 715 consensus_4797#2 GTTGAATCTTTCATAGAACAACTTGACAGGAAGAATACTGCAGGGCAACCAGTT-CGGGT 222 consensus_4797#1 GCTGCACATCTT---CAATCGCCGGCCGGGTCGC---CGGGAAAGCAGCCGGAGGCGGGA 587 * ** * * * ** * * * * * * * * * * ** * **** consensus_4797#0 CATTTAGCAACAGCTCCTTTGAAGGTAATGTCAACCTCTGTGGAA-AGCCACTCTCTAAA 774 consensus_4797#2 CATTTAGCAACAGCTCCTTTGAAGGTAATGTCAACCTATGTGGAA-GGCCACTCTCTAAA 281 consensus_4797#1 CA--TGGCCGCGGCCCCGTC-----TGGTGTTCGCCGCAACATAACAGGCTTTCCGTGGG 640 ** * ** * ** ** * * *** ** ** * * ** * consensus_4797#0 CAATGTGATACTCCAGGCTCAACATCTCCAAGTGCATCAGCTCCTTCAGGTACCAACAGT 834 consensus_4797#2 CAATGTGATACTCCAGGCTCANCATCTCCAAGTGAATCAGCTCCTTCAGATACCAACAGT 341 consensus_4797#1 CCTCCAAACATCTCGGCCCGTACATGTCGAAGTA-GTTGACCTAGTAAACGGCCCACTGC 699 * * * * * * *** ** **** * * * * ** ** * consensus_4797#0 TTCTGGCAGGACAGACTTGGCGTGATCCTTTTGTT-CATCTTTTCTGGCCTGGGGTTCAC 893 consensus_4797#2 TTCTGGCAGGACAGACTTGGTGTGATCCTTTTGTT-CATCTTGTCTGGCCTGGGGTTCAC 400 consensus_4797#1 CTA-GACAGCACATGGACACATGGATGGGCCGACAACATCACGGCCTGTTCAGAGACCGC 758 * * *** *** *** **** * * * * * * consensus_4797#0 AGTGG-GCTTCATATTGGCAGTCTGGTTCGAATCATTGTGCCACATAGAACGATGGAATC 952 consensus_4797#2 AGTGG-GCTTCATATTGGCAGTCTGTGCAGTGGGCCGGTGGCGCATTCTCTCGAACANCC 459 consensus_4797#1 ACCATCGGTCTATCGCGCTCACCCG--CCCAGTCACGGT--CTCACGGAGGCGTAGAAGT 814 * * * ** * * * ** * ** * consensus_4797#0 GCAAAAAACGATGATTGTTAGTATACACTATATGTATGGTGTTTATCCA--CCTACGG-A 1009 consensus_4797#2 GGTGGCCCTCGTGGT-GTGGTGGTGGAAGAAGAGGGCGATGNCGAAGCAGACGGACGGGA 518 consensus_4797#1 GATCGAAGTGTTAAATCCTAGATTTCACACTGCTAATTGTATTTCTTTT----AATGGTA 870 * * * * * * ** * consensus_4797#0 CATG-ATATATGTGTATGTGTGTACTCGTAATTAGTGAG--AATTTAAATTCATT----- 1061 consensus_4797#2 CGGG-NCATCCCAGTAGCGATCCATTGATTGCCGACTGC--AATATCTGCTTGAAAAGTG 575 consensus_4797#1 GATGTACACGTTGACGGCAAGGCGCATGTAATAATTTTATTAATCTTAAGATATACCGA- 929 * * * *** * consensus_4797#0 ------------------------------------------------- consensus_4797#2 CAACATCTGGAACCTTGGATACCATCTCACCTTCCTCTCCGCCCACCTC 624 consensus_4797#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||