These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 849 fasta sequence [GGCTCAGAAACCGCCTACAAAACGGCGCCCGGCGTCCCACGGATCAAGCGACCCCCTAAAAAACCAACCGAAAAAGAAAAAAAAAAGAAGCAGAG-AAAAAAGCTCTCGCGGCATGGATTCGCACGTAGGCAAGTTATTCGATTCGGTGGGCTCGATCTTCCGCGGCAGCGACACCCTCCCCTGGTGCGACCGCGACATCATCGCTGGTTGTGAGAACGAGGTTGCGGAGGCTGCGAATGAAGAACAGAAGAATGAGAGCCTTATGAGGCTTTCGTGGGCGCTTGTTCACTCCAGACAGCCTGAGGATGTGAACCGCGGCATTGGAATGCTTCAAGCTTCTTTGGACAGGTCTACCAGTCCACTGCAGACAAGGGAGAAGCTCTACTTACTGGCTGTTGGACACTACAGAACTGGTGATTATACAAGGAGTCGGCAGCTTTTGGAAAGATGCTTAGAGATTCAACCTGACTGGAGGCAAGCTCTCACTTTACAAAGGCTTGTTGAGGACAAAACCAGAAGAGACGGTATGATTGGCATGGCTATTGTCACTGGTGCCTTCGGACTTGTGGGACTTGTTGCTGGTGGAATCATCGCTGCCGCTTCTTCTTCATCCTCATCATCTAGGAAGAAATGAGGAACCCATATCAAGTGAATAAGATGTCAAGATGGGCAAGAAATCGATGTAAATATGCGCATTTTGCTGTCATACTTGTTGCAACCGTATACTCACGTCTCCATTTTTCAG-TCCTTTTACCATGAGTTCAAACAGGAGACATCACATG-CCTGCATGTTAAACATCATGGAAGATGAGGAGGCTCCTGTTATGAGTTGCAATCAGGATTTACGTAA] [+] EMBL AK105146 [GGCTCAGAAACCGCCTACAAAACGGCGCCCGGCGTCCCACGGATCAAGCGACCCCCTAAAAAACCAACCGAAAAAGAAAAAAAAAAGAAGCAGAG AAAAAAGCTCTCGCGGCATGGATTCGCACGTAGGCAAGTTATTCGATTCGGTGGGCTCGATCTTCCGCGGCAGCGACACCCTCCCCTGGTGCGACCGCGACATCATCGCTGGTTGTGAGAACGAGGTTGCGGAGGCTGCGAATGAAGAACAGAAGAATGAGAGCCTTATGAGGCTTTCGTGGGCGCTTGTTCACTCCAGACAGCCTGAGGATGTGAACCGCGGCATTGGAATGCTTCAAGCTTCTTTGGACAGGTCTACCAGTCCACTGCAGACAAGGGAGAAGCTCTACTTACTGGCTGTTGGACACTACAGAACTGGTGATTATACAAGGAGTCGGCAGCTTTTGGAAAGATGCTTAGAGATTCAACCTGACTGGAGGCAAGCTCTCACTTTACAAAGGCTTGTTGAGGACAAAACCAGAAGAGACGGTATGATTGGCATGGCTATTGTCACTGGTGCCTTCGGACTTGTGGGACTTGTTGCTGGTGGAATCATCGCTGCCGCTTCTTCTTCATCCTCATCATCTAGGAAGAAATGAGGAACCCATATCAAGTGAATAAGATGTCAAGATGGGCAAGAAATCGATGTAAATATGCGCATTTTGCTGTCATACTTGTTGCAACCGTATACTCACGTCTCCATTTTTCAG TCCTTTTACCATGAGTTCAAACAGGAGACATCACATG CCTGCATGTTAAACATCATGGAAGATGAGGAGGCTCCTGTTATGAGTTGCAATCAGGATTTACGTAA] [+] EMBL CA767290 [ TAAAAAACCAACCGAAAAAG AAAAAAAAAGAAGCAGAGAAAAAAAGCTCTCGCGGCATGGATTCGCACGTAGGCAAGTTCTTCGATTCGGTGGGCTCGATCTTCCGCGGCAGCGACACCCTCCCCTGGTGCGACCGCGACATCATCGCTGGTTGTGAGAACGAGGTTGCGGAGGCTGCGAATGAAGAACAGAAGAATGAGAGCCTTATGAGGCTTTCGTGGGCGCTTGTTCACTCCAGACAGCCTGAGGATGTGAACCGCGGCATTGGAATGCTTCAAGCTTCTTTGGACAGGTCTACCAGTCCACTGCAGACGAGGGAGAAGCTCTACTTACTGGCTGTTGGACACTACAGAACTGGTGATTATACAAGGAGTCGGCAGCTTTTGGAAAGATGCTTAGAGATTCAACCTGACTGGAGGCAAGCTCTCACTTTACAAAGGCTTGTTGAGGACAAAACCAGAAGAGACGGTATGATTGGCATGGCTATTGTCACTGGTGCCTTCGGACTTGTGGGACTTGTTGCTGGTGGAATCATCGCTGCCGCTTCTTCTTCATCCTCATCATCTAGGAAGAAATGAGGAACCCATATCAAGTGAATAAGATGTCAAGATGGGCAAGAAATCGATGTAAATATGCGCATCTTGCTGTCACACTTGTTGCAACCGTATACTCACGTCTCCATTTTTCAGTTCCTTTTACCATGAGTTCAAACAAGAGACATCACATGNCCTGCATGTTAAACATCATGGAAGATGAGGAGGCTNCTGTTATGAGTTGCAATCAGG ] consensusID : consensus_4798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [TTTCTCCAAGGCGGTGGCCGCGCTTTTGAAAAGATCCTTAAAGGCGTTCCCCCTGCGCGGAGGGCAAGGCTCTCTCCTTCTCAAAGCGCTTGTGGAGACCAAAAACCAGAAGAACCGGGTATGATTGGCACGGCTATTGTCCATGGGGCCTTCGGACTTGTGGGCCTTGTTGCTGGGGAAATCATAACGCCCGCTTTTTGTTCATCCTCATCCTCTAGGAAGAAATAAGGACCCCATATCAAGTGAATAAGATGTCAAGGTGGGCAAGAAATCAATGTAAGTATGCGCATCTTGCTGTCATACTTGTTGCAACCGTATACTCAGGTTTCCATTTTTCAGTCCTTTTACCATGAGTTCAACCAAGAGCCATCCCAGGCCTGCATGTTAAACATCATGGAAGATGAGGAGGCCCCTGTTTTGAGTTCCAATCAGGATTTACGTAACCGTGTGGTTATCATGATTATCATGGCCAGTAATTTTCTCAGTTTTTGAAACCCCGGTAAACCTCCCGGTGGCCGCCCGGTTACCCCGATAACTGTCTTACCGTGGGGTGGTTGTAACCCCGCTCAAAATGGTTTGGTAAACCTGGTTGCAATCCTTCAGTACTTGAACTGATGGCTACTCCCTTAAATTGTGGAGTAAAATTTTAATTACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761386 [TTTCTCCAAGGCGGTGGCCGCGCTTTTGAAAAGATCCTTAAAGGCGTTCCCCCTGCGCGGAGGGCAAGGCTCTCTCCTTCTCAAAGCGCTTGTGGAGACCAAAAACCAGAAGAACCGGGTATGATTGGCACGGCTATTGTCCATGGGGCCTTCGGACTTGTGGGCCTTGTTGCTGGGGAAATCATAACGCCCGCTTTTTGTTCATCCTCATCCTCTAGGAAGAAATAAGGACCCCATATCAAGTGAATAAGATGTCAAGGTGGGCAAGAAATCAATGTAAGTATGCGCATCTTGCTGTCATACTTGTTGCAACCGTATACTCAGGTTTCCATTTTTCAGTCCTTTTACCATGAGTTCAACCAAGAGCCATCCCAGGCCTGCATGTTAAACATCATGGAAGATGAGGAGGCCCCTGTTTTGAGTTCCAATCAGGATTTACGTAACCGTGTGGTTATCATGATTATCATGGCCAGTAATTTTCTCAGTTTTTGAAACCCCGGTAAACCTCCCGGTGGCCGCCCGGTTACCCCGATAACTGTCTTACCGTGGGGTGGTTGTAACCCCGCTCAAAATGGTTTGGTAAACCTGGTTGCAATCCTTCAGTACTTGAACTGATGGCTACTCCCTTAAATTGTGGAGTAAAATTTTAATTACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4798#0 GGCTCAGAAACCGCCTACAAAACGGCGCCCGGCGTCCCACGGATCAAGCGACCCCCTAAA 60 consensus_4798#1 ------------------------------------------------------------ consensus_4798#0 AAACCAACCGAAAAAGAAAAAAAAAAGAAGCAGAGAAAAAAGCTCTCGCGGCATGGATTC 120 consensus_4798#1 ------------------------------------------------------------ consensus_4798#0 GCACGTAGGCAAGTTATTCGATTCGGTGGGCTCGATCTTCCGCGGCAGCGACACCCTCCC 180 consensus_4798#1 ------------------------------------------------------------ consensus_4798#0 CTGGTGCGACCGCGACATCATCGCTGGTTGTGAGAACGAGGTTGCGGAGGCTGCGAATGA 240 consensus_4798#1 ------------------------------------------------------------ consensus_4798#0 AGAACAGAAGAATGAGAGCCTTATGAGGCTTTCGTGGGCGCTTGTTCACTCCAGACAGCC 300 consensus_4798#1 ------------------------------------------------------------ consensus_4798#0 TGAGGATGTGAACCGCGGCATTGGAATGCTTCAAGCTTCTTTGGACAGGTCTACCAGTCC 360 consensus_4798#1 ------------------------------------------------------------ consensus_4798#0 ACTGCAGACAAGGGAGAAGCTCTACTTACTGGCTGTTGGACACTACAGAACTGGTGATTA 420 consensus_4798#1 --------------------------------------------------------TTTC 4 ** consensus_4798#0 TACAAGGAGTCGGCAGC--TTTTGGAAAGATGCTTAGAGA--TTCAACCTGACTGGAGG- 475 consensus_4798#1 TCCAAGGCGGTGGCCGCGCTTTTGAAAAGATCCTTAAAGGCGTTCCCCCTGCGCGGAGGG 64 * ***** * *** ** ***** ****** **** ** *** **** ***** consensus_4798#0 CAAG---CTCTCACTTTACAAAGGCTTGTTGAGGACAAAA-CCAGAAGAGACGG-TATGA 530 consensus_4798#1 CAAGGCTCTCTCCTTCTCAAAGCGCTTGTGGAGACCAAAAACCAGAAGAACCGGGTATGA 124 **** ***** * * ** ****** *** ***** ******** *** ***** consensus_4798#0 TTGGCATGGCTATTGTCACTGGTGCCTTCGGACTTGTGGGACTTGTTGCTGGTGGAATCA 590 consensus_4798#1 TTGGCACGGCTATTGTCCATGGGGCCTTCGGACTTGTGGGCCTTGTTGCTGGGGAAATCA 184 ****** ********** *** ***************** *********** * ***** consensus_4798#0 TCGCTGCCGCTTCTTCTTCATCCTCATCATCTAGGAAGAAATGAGGAACCCATATCAAGT 650 consensus_4798#1 TAACGCCCGCTTTTTGTTCATCCTCATCCTCTAGGAAGAAATAAGGACCCCATATCAAGT 244 * * ****** ** ************ ************* **** ************ consensus_4798#0 GAATAAGATGTCAAGATGGGCAAGAAATCGATGTAAATATGCGCATTTTGCTGTCATACT 710 consensus_4798#1 GAATAAGATGTCAAGGTGGGCAAGAAATCAATGTAAGTATGCGCATCTTGCTGTCATACT 304 *************** ************* ****** ********* ************* consensus_4798#0 TGTTGCAACCGTATACTCACGTCTCCATTTTTCAGTCCTTTTACCATGAGTTCAAACAGG 770 consensus_4798#1 TGTTGCAACCGTATACTCAGGTTTCCATTTTTCAGTCCTTTTACCATGAGTTCAACCAAG 364 ******************* ** ******************************** ** * consensus_4798#0 AGACATCACATGCCTGCATGTTAAACATCATGGAAGATGAGGAGGCTCCTGTTATGAGTT 830 consensus_4798#1 AGCCATCCCAGGCCTGCATGTTAAACATCATGGAAGATGAGGAGGCCCCTGTTTTGAGTT 424 ** **** ** *********************************** ****** ****** consensus_4798#0 GCAATCAGGATTTACGTAA----------------------------------------- 849 consensus_4798#1 CCAATCAGGATTTACGTAACCGTGTGGTTATCATGATTATCATGGCCAGTAATTTTCTCA 484 ****************** consensus_4798#0 ------------------------------------------------------------ consensus_4798#1 GTTTTTGAAACCCCGGTAAACCTCCCGGTGGCCGCCCGGTTACCCCGATAACTGTCTTAC 544 consensus_4798#0 ------------------------------------------------------------ consensus_4798#1 CGTGGGGTGGTTGTAACCCCGCTCAAAATGGTTTGGTAAACCTGGTTGCAATCCTTCAGT 604 consensus_4798#0 ------------------------------------------------------------ consensus_4798#1 ACTTGAACTGATGGCTACTCCCTTAAATTGTGGAGTAAAATTTTAATTACCTAAAAAAAA 664 consensus_4798#0 --------------------- consensus_4798#1 AAAAAAAAAAAAAAAAAAAAA 685 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||