These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4807#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1381 fasta sequence [ATTCCACGCACGCGCACTTCACGTGACGAGACCATCGCCACCCCCCTCCGCCATCCTTCCCACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGCCCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCCACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGATGAGGCGGCGGCGGCGCCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGTTACTTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGGCGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTTATTTCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGTCAGCCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCTGCTGTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAAAGCGACTGAACACTCAACTTCGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGCCTTACTTACGCGCCAGTTGGCAGAGCAACAGAAACTGAAGTTATTGTAGATCCCAGGAAGCAACAACTGACAGTAAATTTGAGAAACGGGAAGACATTTATGAGGAATCAAGATCTTGATATGGCAGTAAAGGAATTCAGGGCAGCTCTGGAGCTCGCAAAGAGCGTAGGAGATCGCTTTGAGGAGAAGAAAGCTGCTCGTGGATTAGGTGCATCGCTACAAAGATTGGGCAAATACAGAGAAGCAATGAACTGCTACTATAAAGTCCTGGAGCTTTCCAAGGAAACGGGCGAGGATTCCGGGTGCACCGAGGCCTACGGCGCCATAGCTGACTGCTACACGGAGCTTGGGGATCTAGAGCGAGCGGCGAAGTTGTATGACAAGTACATATCAAGGTTGCAGCCCGGCGGTGGTGAGTAAACGCTTGGGCTTTCCTGACCCAAACGATTTGGTTTCTTCCTGTTGCATGGTTGATGTTCAGCAAAACAGTCAATTTGTTGGCCTCATTTTAGCTTTGTGGGAGCGCTTGAATCGCTCAAGGAAAAAAAGCTCAACTCTTGTATATAAATGTCAGTGGTGCGTGCTACTTGAGATAACAATGGCAAAGCTTGGTCTGGTTTGCTGCCTGTTGCAAGCGGCAAGCACTGCGTACACACACGGTGCACGCATCTACTGATCTTCCTAAAATAACTCTCCCAAAGTTCAAATATTTAAAGAAT] [+] EMBL AK069595 [ATTCCACGCACGCGCACTTCACGTGACGAGACCATCGCCACCCCCCTCCGCCATCCTTCCCACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGCCCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCCACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGATGAGGCGGCGGCGGCGCCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGTTACTTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGGCGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTTATTTCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGTCAGCCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCTGCTGTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAAAGCGACTGAACACTCAACTTCGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGCCTTACTTACGCGCCAGTTGGCAGAGCAACAGAAACTGAAGTTATTGTAGATCCCAGGAAGCAACAACTGACAGTAAATTTGAGAAACGGGAAGACATTTATGAGGAATCAAGATCTTGATATGGCAGTAAAGGAATTCAGGGCAGCTCTGGAGCTCGCAAAGAGCGTAGGAGATCGCTTTGAGGAGAAGAAAGCTGCTCGTGGATTAGGTGCATCGCTACAAAGATTGGGCAAATACAGAGAAGCAATGAACTGCTACTATAAAGTCCTGGAGCTTTCCAAGGAAACGGGCGAGGATTCCGGGTGCACCGAGGCCTACGGCGCCATAGCTGACTGCTACACGGAGCTTGGGGATCTAGAGCGAGCGGCGAAGTTGTATGACAAGTACATATCAAGGTTGCAGCCCGGCGGTGGTGAGTAAACGCTTGGGCTTTCCTGACCCAAACGATTTGGTTTCTTCCTGTTGCATGGTTGATGTTCAGCAAAACAGTCAATTTGTTGGCCTCATTTTAGCTTTGTGGGAGCGCTTGAATCGCTCAAGGAAAAAAAGCTCAACTCTTGTATATAAATGTCAGTGGTGCGTGCTACTTGAGATAACAATGGCAAAGCTTGGTCTGGTTTGCTGCCTGTTGCAAGCGGCAAGCACTGCGTACACACACGGTGCACGCATCTACTGATCTTCCTAAAATAACTCT ] [-] EMBL CB650705 [ ATTGAGTCATTTGCTCCTGGCCTTACTTACGCGCCAGTTGGCAGAGCAACAGAAACTGAAGTTATTGTAGATCCCAGGAAGCAACAACTGACAGTAAATTTGAGAAACGGGAAGACATTTATGAGGAATCAAGATCTTGATATGGCAGTAAAGGAATTCAGGGCAGCTCTGGAGCTCGCAAAGAGCGTAGGAGATCGCTTTGAGGAGAAGAAAGCTGCTCGTGGATTAGGTGCATCGCTACAAAGATTGGGCAAATACAGAGAAGCAATGAACTGCTACTATAAAGTCCTGGAGCTTTCCAAGGAAACGGGCGAGGATTCCGGGTGCACCGAGGCCTACGGCGCCATAGCTGACTGCTACACGGAGCTTGGGGATCTAGAGCGAGCGGCGAAGTTGTATGACAAGTACATATCAAGGTTGCAGCCCGGCGGTGGTGAGTAAACGCTTGGGCTTTCCTGACCCAAACGATTTGGTTTCTTCCTGTTGCATGGTTGATGTTCAGCAAAACAGTCAATTTGTTGGCCTCATTTTAGCTTTGTGGGAGCGCTTGAATCGCTCAAGGAAAAAAAGCTCAACTCTTGTATATAAATGTCAGTGGTGCGTGCTACTTGAGATAACAATGGCAAAGCTTGGTCTGGTTTGCTGCCTGTTGCAAGCGGCAAGGACTGCGTACACACACGGTGCACGCATCTACTGATCTTCCTAAAATAACTCTCCCAAAGTTCAAATATTTAAAGAAT] consensusID : consensus_4807#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 752 fasta sequence [AGACCATCGCCACCCCCCTCCGCCATCCTTCCCACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGCCCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCCACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGGTAAGCCTCATCCTCGAGGTTCCTCTCTTCTCACTCGCGCCCCGCCTGCCGCAAGGCTAGCCCTAGCGCTCTGTGAGGATTGATTCGTCATACCGTATCGTCGTGGGGGGAACAGATGAGGCGGCGGCGGCGCCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGTTACTTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGGCGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTTATTTCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGTCAGCCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCTGCTGTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAGAGCGACTGAACACTCAACTTCGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGCCTT] [+] EMBL CB650704 [AGACCATCGCCACCCCCCTCCGCCATCCTTCCCACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGCCCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCCACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGGTAAGCCTCATCCTCGAGGTTCCTCTCTTCTCACTCGCGCCCCGCCTGCCGCAAGGCTAGCCCTAGCGCTCTGTGAGGATTGATTCGTCATACCGTATCGTCGTGGGGGGAACAGATGAGGCGGCGGCGGCGCCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGTTACTTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGGCGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTTATTTCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGTCAGCCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCTGCTGTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAGAGCGACTGAACACTCAACTTCGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4807#0 ATTCCACGCACGCGCACTTCACGTGACGAGACCATCGCCACCCCCCTCCGCCATCCTTCC 60 consensus_4807#1 ----------------------------AGACCATCGCCACCCCCCTCCGCCATCCTTCC 32 ******************************** consensus_4807#0 CACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGC 120 consensus_4807#1 CACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGC 92 ************************************************************ consensus_4807#0 CCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCC 180 consensus_4807#1 CCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCC 152 ************************************************************ consensus_4807#0 ACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCG------------ 228 consensus_4807#1 ACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGGTAAGCCTCATC 212 ************************************************ consensus_4807#0 ------------------------------------------------------------ consensus_4807#1 CTCGAGGTTCCTCTCTTCTCACTCGCGCCCCGCCTGCCGCAAGGCTAGCCCTAGCGCTCT 272 consensus_4807#0 -------------------------------------------ATGAGGCGGCGGCGGCG 245 consensus_4807#1 GTGAGGATTGATTCGTCATACCGTATCGTCGTGGGGGGAACAGATGAGGCGGCGGCGGCG 332 ***************** consensus_4807#0 CCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGTTAC 305 consensus_4807#1 CCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGTTAC 392 ************************************************************ consensus_4807#0 TTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGG 365 consensus_4807#1 TTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGG 452 ************************************************************ consensus_4807#0 CGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTTATT 425 consensus_4807#1 CGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTTATT 512 ************************************************************ consensus_4807#0 TCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGTCAG 485 consensus_4807#1 TCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGTCAG 572 ************************************************************ consensus_4807#0 CCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCTGCT 545 consensus_4807#1 CCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCTGCT 632 ************************************************************ consensus_4807#0 GTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAAAGCGACTGAACACTCAACTT 605 consensus_4807#1 GTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAGAGCGACTGAACACTCAACTT 692 *************************************** ******************** consensus_4807#0 CGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGCCTT 665 consensus_4807#1 CGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGCCTT 752 ************************************************************ consensus_4807#0 ACTTACGCGCCAGTTGGCAGAGCAACAGAAACTGAAGTTATTGTAGATCCCAGGAAGCAA 725 consensus_4807#1 ------------------------------------------------------------ consensus_4807#0 CAACTGACAGTAAATTTGAGAAACGGGAAGACATTTATGAGGAATCAAGATCTTGATATG 785 consensus_4807#1 ------------------------------------------------------------ consensus_4807#0 GCAGTAAAGGAATTCAGGGCAGCTCTGGAGCTCGCAAAGAGCGTAGGAGATCGCTTTGAG 845 consensus_4807#1 ------------------------------------------------------------ consensus_4807#0 GAGAAGAAAGCTGCTCGTGGATTAGGTGCATCGCTACAAAGATTGGGCAAATACAGAGAA 905 consensus_4807#1 ------------------------------------------------------------ consensus_4807#0 GCAATGAACTGCTACTATAAAGTCCTGGAGCTTTCCAAGGAAACGGGCGAGGATTCCGGG 965 consensus_4807#1 ------------------------------------------------------------ consensus_4807#0 TGCACCGAGGCCTACGGCGCCATAGCTGACTGCTACACGGAGCTTGGGGATCTAGAGCGA 1025 consensus_4807#1 ------------------------------------------------------------ consensus_4807#0 GCGGCGAAGTTGTATGACAAGTACATATCAAGGTTGCAGCCCGGCGGTGGTGAGTAAACG 1085 consensus_4807#1 ------------------------------------------------------------ consensus_4807#0 CTTGGGCTTTCCTGACCCAAACGATTTGGTTTCTTCCTGTTGCATGGTTGATGTTCAGCA 1145 consensus_4807#1 ------------------------------------------------------------ consensus_4807#0 AAACAGTCAATTTGTTGGCCTCATTTTAGCTTTGTGGGAGCGCTTGAATCGCTCAAGGAA 1205 consensus_4807#1 ------------------------------------------------------------ consensus_4807#0 AAAAAGCTCAACTCTTGTATATAAATGTCAGTGGTGCGTGCTACTTGAGATAACAATGGC 1265 consensus_4807#1 ------------------------------------------------------------ consensus_4807#0 AAAGCTTGGTCTGGTTTGCTGCCTGTTGCAAGCGGCAAGCACTGCGTACACACACGGTGC 1325 consensus_4807#1 ------------------------------------------------------------ consensus_4807#0 ACGCATCTACTGATCTTCCTAAAATAACTCTCCCAAAGTTCAAATATTTAAAGAAT 1381 consensus_4807#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||