cluster # 4807

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Oryza sativa
cluster # 4807 cluster # 4807 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4807#0 length = 1381 sequences # 2

consensus_4807#1 length = 752 sequences # 1

consensusID : consensus_4807#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1381
fasta sequence

                              [ATTCCACGCACGCGCACTTCACGTGACGAGACCATCGCCACCCCCCTCCGCCATCCTTCCCACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGCCCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCCACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGATGAGGCGGCGGCGGCGCCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGTTACTTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGGCGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTTATTTCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGTCAGCCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCTGCTGTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAAAGCGACTGAACACTCAACTTCGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGCCTTACTTACGCGCCAGTTGGCAGAGCAACAGAAACTGAAGTTATTGTAGATCCCAGGAAGCAACAACTGACAGTAAATTTGAGAAACGGGAAGACATTTATGAGGAATCAAGATCTTGATATGGCAGTAAAGGAATTCAGGGCAGCTCTGGAGCTCGCAAAGAGCGTAGGAGATCGCTTTGAGGAGAAGAAAGCTGCTCGTGGATTAGGTGCATCGCTACAAAGATTGGGCAAATACAGAGAAGCAATGAACTGCTACTATAAAGTCCTGGAGCTTTCCAAGGAAACGGGCGAGGATTCCGGGTGCACCGAGGCCTACGGCGCCATAGCTGACTGCTACACGGAGCTTGGGGATCTAGAGCGAGCGGCGAAGTTGTATGACAAGTACATATCAAGGTTGCAGCCCGGCGGTGGTGAGTAAACGCTTGGGCTTTCCTGACCCAAACGATTTGGTTTCTTCCTGTTGCATGGTTGATGTTCAGCAAAACAGTCAATTTGTTGGCCTCATTTTAGCTTTGTGGGAGCGCTTGAATCGCTCAAGGAAAAAAAGCTCAACTCTTGTATATAAATGTCAGTGGTGCGTGCTACTTGAGATAACAATGGCAAAGCTTGGTCTGGTTTGCTGCCTGTTGCAAGCGGCAAGCACTGCGTACACACACGGTGCACGCATCTACTGATCTTCCTAAAATAACTCTCCCAAAGTTCAAATATTTAAAGAAT]

[+] EMBL AK069595             [ATTCCACGCACGCGCACTTCACGTGACGAGACCATCGCCACCCCCCTCCGCCATCCTTCCCACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGCCCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCCACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGATGAGGCGGCGGCGGCGCCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGTTACTTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGGCGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTTATTTCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGTCAGCCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCTGCTGTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAAAGCGACTGAACACTCAACTTCGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGCCTTACTTACGCGCCAGTTGGCAGAGCAACAGAAACTGAAGTTATTGTAGATCCCAGGAAGCAACAACTGACAGTAAATTTGAGAAACGGGAAGACATTTATGAGGAATCAAGATCTTGATATGGCAGTAAAGGAATTCAGGGCAGCTCTGGAGCTCGCAAAGAGCGTAGGAGATCGCTTTGAGGAGAAGAAAGCTGCTCGTGGATTAGGTGCATCGCTACAAAGATTGGGCAAATACAGAGAAGCAATGAACTGCTACTATAAAGTCCTGGAGCTTTCCAAGGAAACGGGCGAGGATTCCGGGTGCACCGAGGCCTACGGCGCCATAGCTGACTGCTACACGGAGCTTGGGGATCTAGAGCGAGCGGCGAAGTTGTATGACAAGTACATATCAAGGTTGCAGCCCGGCGGTGGTGAGTAAACGCTTGGGCTTTCCTGACCCAAACGATTTGGTTTCTTCCTGTTGCATGGTTGATGTTCAGCAAAACAGTCAATTTGTTGGCCTCATTTTAGCTTTGTGGGAGCGCTTGAATCGCTCAAGGAAAAAAAGCTCAACTCTTGTATATAAATGTCAGTGGTGCGTGCTACTTGAGATAACAATGGCAAAGCTTGGTCTGGTTTGCTGCCTGTTGCAAGCGGCAAGCACTGCGTACACACACGGTGCACGCATCTACTGATCTTCCTAAAATAACTCT                         ]
[-] EMBL CB650705             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTGAGTCATTTGCTCCTGGCCTTACTTACGCGCCAGTTGGCAGAGCAACAGAAACTGAAGTTATTGTAGATCCCAGGAAGCAACAACTGACAGTAAATTTGAGAAACGGGAAGACATTTATGAGGAATCAAGATCTTGATATGGCAGTAAAGGAATTCAGGGCAGCTCTGGAGCTCGCAAAGAGCGTAGGAGATCGCTTTGAGGAGAAGAAAGCTGCTCGTGGATTAGGTGCATCGCTACAAAGATTGGGCAAATACAGAGAAGCAATGAACTGCTACTATAAAGTCCTGGAGCTTTCCAAGGAAACGGGCGAGGATTCCGGGTGCACCGAGGCCTACGGCGCCATAGCTGACTGCTACACGGAGCTTGGGGATCTAGAGCGAGCGGCGAAGTTGTATGACAAGTACATATCAAGGTTGCAGCCCGGCGGTGGTGAGTAAACGCTTGGGCTTTCCTGACCCAAACGATTTGGTTTCTTCCTGTTGCATGGTTGATGTTCAGCAAAACAGTCAATTTGTTGGCCTCATTTTAGCTTTGTGGGAGCGCTTGAATCGCTCAAGGAAAAAAAGCTCAACTCTTGTATATAAATGTCAGTGGTGCGTGCTACTTGAGATAACAATGGCAAAGCTTGGTCTGGTTTGCTGCCTGTTGCAAGCGGCAAGGACTGCGTACACACACGGTGCACGCATCTACTGATCTTCCTAAAATAACTCTCCCAAAGTTCAAATATTTAAAGAAT]




>consensus_4807#0
ATTCCACGCACGCGCACTTCACGTGACGAGACCATCGCCACCCCCCTCCGCCATCCTTCC
CACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGC
CCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCC
ACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGATGAGGCGGCGG
CGGCGCCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCG
GTTACTTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCC
TTCGGCGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTG
TTATTTCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACAT
GTCAGCCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTG
CTGCTGTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAAAGCGACTGAACACTC
AACTTCGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTG
GCCTTACTTACGCGCCAGTTGGCAGAGCAACAGAAACTGAAGTTATTGTAGATCCCAGGA
AGCAACAACTGACAGTAAATTTGAGAAACGGGAAGACATTTATGAGGAATCAAGATCTTG
ATATGGCAGTAAAGGAATTCAGGGCAGCTCTGGAGCTCGCAAAGAGCGTAGGAGATCGCT
TTGAGGAGAAGAAAGCTGCTCGTGGATTAGGTGCATCGCTACAAAGATTGGGCAAATACA
GAGAAGCAATGAACTGCTACTATAAAGTCCTGGAGCTTTCCAAGGAAACGGGCGAGGATT
CCGGGTGCACCGAGGCCTACGGCGCCATAGCTGACTGCTACACGGAGCTTGGGGATCTAG
AGCGAGCGGCGAAGTTGTATGACAAGTACATATCAAGGTTGCAGCCCGGCGGTGGTGAGT
AAACGCTTGGGCTTTCCTGACCCAAACGATTTGGTTTCTTCCTGTTGCATGGTTGATGTT
CAGCAAAACAGTCAATTTGTTGGCCTCATTTTAGCTTTGTGGGAGCGCTTGAATCGCTCA
AGGAAAAAAAGCTCAACTCTTGTATATAAATGTCAGTGGTGCGTGCTACTTGAGATAACA
ATGGCAAAGCTTGGTCTGGTTTGCTGCCTGTTGCAAGCGGCAAGCACTGCGTACACACAC
GGTGCACGCATCTACTGATCTTCCTAAAATAACTCTCCCAAAGTTCAAATATTTAAAGAA
T

consensusID : consensus_4807#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 752
fasta sequence

                              [AGACCATCGCCACCCCCCTCCGCCATCCTTCCCACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGCCCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCCACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGGTAAGCCTCATCCTCGAGGTTCCTCTCTTCTCACTCGCGCCCCGCCTGCCGCAAGGCTAGCCCTAGCGCTCTGTGAGGATTGATTCGTCATACCGTATCGTCGTGGGGGGAACAGATGAGGCGGCGGCGGCGCCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGTTACTTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGGCGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTTATTTCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGTCAGCCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCTGCTGTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAGAGCGACTGAACACTCAACTTCGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGCCTT]

[+] EMBL CB650704             [AGACCATCGCCACCCCCCTCCGCCATCCTTCCCACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGCCCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCCACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGGTAAGCCTCATCCTCGAGGTTCCTCTCTTCTCACTCGCGCCCCGCCTGCCGCAAGGCTAGCCCTAGCGCTCTGTGAGGATTGATTCGTCATACCGTATCGTCGTGGGGGGAACAGATGAGGCGGCGGCGGCGCCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGTTACTTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGGCGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTTATTTCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGTCAGCCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCTGCTGTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAGAGCGACTGAACACTCAACTTCGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGCCTT]




>consensus_4807#1
AGACCATCGCCACCCCCCTCCGCCATCCTTCCCACCGCCGCCGCCAACGCCGACGCCGCC
CGACGACCGAGCCAACGCGACCAGCCAGCCGCCCATGCCTGCGCGCGCGGCGGCGCTCTC
CTGCCGCGGAGTCTCCCCGCACCCCCGCGCCCACTCCCTCCTCCCTGGCCGCCGCCGCCG
CCCCGTCCTCCCCTTCGCCGGTAAGCCTCATCCTCGAGGTTCCTCTCTTCTCACTCGCGC
CCCGCCTGCCGCAAGGCTAGCCCTAGCGCTCTGTGAGGATTGATTCGTCATACCGTATCG
TCGTGGGGGGAACAGATGAGGCGGCGGCGGCGCCCCTACGTGTCAGCTCCGTGCCCCATT
CTCGGGCTTACGGCTGCGGCGGCGGCGGTTACTTCGTGCATCTCGAAGACCGCGATGACG
GAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGGCGAGTCCTTCCCGATCACCAGAAATGGG
CACAACCTGACCTTCTGAAAGCTGCTGTTATTTCAACCATGTCAATACTTGCTGTGCCTC
TTGAGGCATCGGCATCGGCGGAGACATGTCAGCCAGCTAATTCTATGGCCAATATGCCCA
TTTTTATTGCTGTGGCTCTAATAGGTGCTGCTGTTGGTGGATTACTAGCACGGCAAAGAA
AGGAGGAATTAGAGCGACTGAACACTCAACTTCGCCAAATTAACACGGCACTTAGAAGAC
AGGCGCAGATTGAGTCATTTGCTCCTGGCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4807#0      ATTCCACGCACGCGCACTTCACGTGACGAGACCATCGCCACCCCCCTCCGCCATCCTTCC 60
consensus_4807#1      ----------------------------AGACCATCGCCACCCCCCTCCGCCATCCTTCC 32
                                                  ********************************

consensus_4807#0      CACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGC 120
consensus_4807#1      CACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGCCAGCCGC 92
                      ************************************************************

consensus_4807#0      CCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCC 180
consensus_4807#1      CCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCC 152
                      ************************************************************

consensus_4807#0      ACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCG------------ 228
consensus_4807#1      ACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGGTAAGCCTCATC 212
                      ************************************************            

consensus_4807#0      ------------------------------------------------------------
consensus_4807#1      CTCGAGGTTCCTCTCTTCTCACTCGCGCCCCGCCTGCCGCAAGGCTAGCCCTAGCGCTCT 272
                                                                                  

consensus_4807#0      -------------------------------------------ATGAGGCGGCGGCGGCG 245
consensus_4807#1      GTGAGGATTGATTCGTCATACCGTATCGTCGTGGGGGGAACAGATGAGGCGGCGGCGGCG 332
                                                                 *****************

consensus_4807#0      CCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGTTAC 305
consensus_4807#1      CCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGTTAC 392
                      ************************************************************

consensus_4807#0      TTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGG 365
consensus_4807#1      TTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTTCGG 452
                      ************************************************************

consensus_4807#0      CGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTTATT 425
consensus_4807#1      CGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTTATT 512
                      ************************************************************

consensus_4807#0      TCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGTCAG 485
consensus_4807#1      TCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGTCAG 572
                      ************************************************************

consensus_4807#0      CCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCTGCT 545
consensus_4807#1      CCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCTGCT 632
                      ************************************************************

consensus_4807#0      GTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAAAGCGACTGAACACTCAACTT 605
consensus_4807#1      GTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAGAGCGACTGAACACTCAACTT 692
                      *************************************** ********************

consensus_4807#0      CGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGCCTT 665
consensus_4807#1      CGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGCCTT 752
                      ************************************************************

consensus_4807#0      ACTTACGCGCCAGTTGGCAGAGCAACAGAAACTGAAGTTATTGTAGATCCCAGGAAGCAA 725
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      CAACTGACAGTAAATTTGAGAAACGGGAAGACATTTATGAGGAATCAAGATCTTGATATG 785
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      GCAGTAAAGGAATTCAGGGCAGCTCTGGAGCTCGCAAAGAGCGTAGGAGATCGCTTTGAG 845
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      GAGAAGAAAGCTGCTCGTGGATTAGGTGCATCGCTACAAAGATTGGGCAAATACAGAGAA 905
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      GCAATGAACTGCTACTATAAAGTCCTGGAGCTTTCCAAGGAAACGGGCGAGGATTCCGGG 965
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      TGCACCGAGGCCTACGGCGCCATAGCTGACTGCTACACGGAGCTTGGGGATCTAGAGCGA 1025
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      GCGGCGAAGTTGTATGACAAGTACATATCAAGGTTGCAGCCCGGCGGTGGTGAGTAAACG 1085
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      CTTGGGCTTTCCTGACCCAAACGATTTGGTTTCTTCCTGTTGCATGGTTGATGTTCAGCA 1145
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      AAACAGTCAATTTGTTGGCCTCATTTTAGCTTTGTGGGAGCGCTTGAATCGCTCAAGGAA 1205
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      AAAAAGCTCAACTCTTGTATATAAATGTCAGTGGTGCGTGCTACTTGAGATAACAATGGC 1265
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      AAAGCTTGGTCTGGTTTGCTGCCTGTTGCAAGCGGCAAGCACTGCGTACACACACGGTGC 1325
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      ACGCATCTACTGATCTTCCTAAAATAACTCTCCCAAAGTTCAAATATTTAAAGAAT 1381
consensus_4807#1      --------------------------------------------------------