These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4812#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [GCAATGAAGCTCTATACTAGGCTAACAGATATCTGCCCGCATGGATGCAACCCCTATTCTCAAATAGGAGCCTTTGCTGGCTTAAGATGGGTGCAGGGGTCAATGCATTGCAGGATGCTCAAATTTGCAGGTTGATGCATTCTGACTGGTCGAAGGCATGCTATCTGGAAGGTGCTGCTCAAATGTTACTGAAGGACTTTGAAAAGGCATGTGATGCGTTTTTTGATGGACTCAAATTGGATCCAGCAAGTGATGAGATTGCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAAAGTGGGTATTGGATTGCCATCTTCTCAGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTGCAAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTTCCTAAACAACTGAACAAGCTCAACGACTCTTACCAAAGTTTCGTCTCTGAAGAAAGTCGGTGGGTTGCCTCGGAGGTAAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATCAATATGAATGTGAAAAATGGTAGAATGAAAGTAGCTGGCTCACAGGAAGACTCCGGTTTAGATCCTGAACTAATACGGGCAGACAGGCACCTTTGTACATTCTGTGTTACTACCTTCTTTAATCTTGACGTTGTATAGCCAAAAAAA] [+] EMBL AU075568 [GCAATGAAGCTCTATACTAGGCTAACAGATATCTGCCCGCATGGATGCAACCCCTATTCTCAAATAGGAGCCTTTGCTGGCTTAAGATGGGTGCAGGGGTCAATGCATTGCAGGATGCTCAAATTTGCAGGTTGATGCATTCTGACTGGTCGAAGGCATGCTATCTGGAAGGTGCTGCTCAAATGTTACTGAAGGACTTTGAAAAGGCATGTGATGCGTTTTTTGATGGACTCAAATTGGATCCAGCAAGTGATGAGATTGCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAAAGTGGGTATTGGATTGCCATCTTCTCAGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTGCAAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTTCCTAAACAACTGAACAAGCTCAACGACTCTTACCAAAGTTTCGTCTCTGAAGAAAGTCGGTGGGTTGCCTCGGAGGTAAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATCAATATGAATGTGAAAAATGGTAGAATGAAAGTAGCTGGCTCACAGGAAGACTCCGGTTTAGATCCTGAACTAATACGGGCAGACAGGCACCTTTGTACATTCTGTGTTACTACCTTCTTTAATCTTGACGTTGTATAGCCAAAAAAA] consensusID : consensus_4812#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [AGAATATCCTGCCCCGCATGGATGGCCAACCCCCCAGTTCTCCAAATAGGAACCCTTTTGCCTTGGGGCTTAAATGATGTGCTTCCACGGGGTCAAAATCATTTCAGGATGCTCAAATGTTGCAGGTTGATGCACTTCTGACTGGTCGAAGCAATGCTATCTGGAAGGTGCTGCTCCAATGTTACTGAAGGACTTTGAAAAGGCATGTGACGCGGTTTTTTGATGGACTCCAATTGGATCCACGCAAGTGATGAGATTCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAAGTGGGTATTGGATTGCCATCTTCTCTGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTGCAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTTCCTAAACACTGAACAAGCTCAACAACTCTTACCAAAAAA] [+] EMBL BI800871 [AGAATATCCTGCCCCGCATGGATGGCCAACCCCCCAGTTCTCCAAATAGGAACCCTTTTGCCTTGGGGCTTAAATGATGTGCTTCCACGGGGTCAAAATCATTTCAGGATGCTCAAATGTTGCAGGTTGATGCACTTCTGACTGGTCGAAGCAATGCTATCTGGAAGGTGCTGCTCCAATGTTACTGAAGGACTTTGAAAAGGCATGTGACGCGGTTTTTTGATGGACTCCAATTGGATCCACGCAAGTGATGAGATTCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAAGTGGGTATTGGATTGCCATCTTCTCTGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTGCAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTTCCTAAACACTGAACAAGCTCAACAACTCTTACCAAAAAA] consensusID : consensus_4812#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [ACTAGGCTAACAGATATCTGCCCGCATGATGCAACCCCATTCTCAAATAGGAGCCTTTGCTGGCTTAAGATGGGTGCAGGGGTCAATGCATTTCAGGATGCTCAAATTTGCGTCAATGCATTTCAGGATGCTCAAATTTGCAGGTTGATGCATTCTGACTGGTCGAAGGCATGCTATCTGGAAGGTGTCTGCTCAAATGTTACTGAAGGACTTGAAAGGCCAAG] [+] EMBL AA750104 [ACTAGGCTAACAGATATCTGCCCGCATGATGCAACCCCATTCTCAAATAGGAGCCTTTGCTGGCTTAAGATGGGTGCAGGGGTCAATGCATTTCAGGATGCTCAAATTTGCGTCAATGCATTTCAGGATGCTCAAATTTGCAGGTTGATGCATTCTGACTGGTCGAAGGCATGCTATCTGGAAGGTGTCTGCTCAAATGTTACTGAAGGACTTGAAAGGCCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4812#0 GCAATGAAGCTCTATACTAGGCTAACAGATATCTGCCCGCATGGATG--CAACCCCT--A 56 consensus_4812#1 -----------------------AGAATATCCTGCCCCGCATGGATGGCCAACCCCCCAG 37 consensus_4812#2 ---------------ACTAGGCTAACAGATATCTGCCCGCATG-ATG--CAACCCC---A 39 * * ** ******** *** ******* consensus_4812#0 TTCTC-AAATAGGAGCC--T-TTGCT--------GGCTTAAGAT---GGGTGCA-----G 96 consensus_4812#1 TTCTCCAAATAGGAACCCTT-TTGCCTTG----GGGCTTAAATG---ATGTGCTTCCACG 89 consensus_4812#2 TTCTC-AAATAGGAGCCTTTGCTGGCTTAAGATGGGTGCAGGGGTCAATGCATTTCAGGA 98 ***** ******** ** * ** ** * * consensus_4812#0 GGGTCAATG-----------CATTGCAGGATGCTCAAAT-TTGCAGGTTGATGCA-TTCT 143 consensus_4812#1 GGGTCAAAAT----------CATTTCAGGATGCTCAAATGTTGCAGGTTGATGCACTTCT 139 consensus_4812#2 TGCTCAAATTTGCGTCAATGCATTTCAGGATGCTCAAAT-TTGCAGGTTGATGCA-TTCT 156 * **** **** ************** *************** **** consensus_4812#0 GACTGGTCGAAGGCATGCTATCTGGAAGGTG-CTGCTCAAATGTTACTGAAGGACTTTGA 202 consensus_4812#1 GACTGGTCGAAGCAATGCTATCTGGAAGGTG-CTGCTCCAATGTTACTGAAGGACTTTGA 198 consensus_4812#2 GACTGGTCGAAGGCATGCTATCTGGAAGGTGTCTGCTCAAATGTTACTGAAGGACTT-GA 215 ************ ***************** ****** ****************** ** consensus_4812#0 AAAGGCATGTGATGCG-TTTTTTGATGGACTCAAATTGGATCCA-GCAAGTGATGAGATT 260 consensus_4812#1 AAAGGCATGTGACGCGGTTTTTTGATGGACTCCAATTGGATCCACGCAAGTGATGAGATT 258 consensus_4812#2 AAGGCCAAG--------------------------------------------------- 224 ** * ** * consensus_4812#0 GCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAAAGTGGGT 320 consensus_4812#1 -CAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAA-GTGGGT 316 consensus_4812#2 ------------------------------------------------------------ consensus_4812#0 ATTGGATTGCCATCTTCTCAGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTG 380 consensus_4812#1 ATTGGATTGCCATCTTCTCTGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTG 376 consensus_4812#2 ------------------------------------------------------------ consensus_4812#0 CAAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTTCCTAAACAACTGAAC 440 consensus_4812#1 CAA-GGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTTCCTAAACA-CTGAAC 434 consensus_4812#2 ------------------------------------------------------------ consensus_4812#0 AAGCTCAACGACTCTTACCAAAGTTTCGTCTCTGAAGAAAGTCGGTGGGTTGCCTCGGAG 500 consensus_4812#1 AAGCTCAACAACTCTTACCAAAAAA----------------------------------- 459 consensus_4812#2 ------------------------------------------------------------ consensus_4812#0 GTAAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATCAATATGAATGTGAAAA 560 consensus_4812#1 ------------------------------------------------------------ consensus_4812#2 ------------------------------------------------------------ consensus_4812#0 ATGGTAGAATGAAAGTAGCTGGCTCACAGGAAGACTCCGGTTTAGATCCTGAACTAATAC 620 consensus_4812#1 ------------------------------------------------------------ consensus_4812#2 ------------------------------------------------------------ consensus_4812#0 GGGCAGACAGGCACCTTTGTACATTCTGTGTTACTACCTTCTTTAATCTTGACGTTGTAT 680 consensus_4812#1 ------------------------------------------------------------ consensus_4812#2 ------------------------------------------------------------ consensus_4812#0 AGCCAAAAAAA 691 consensus_4812#1 ----------- consensus_4812#2 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||