These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1206 fasta sequence [CAGTCTGGCTCCCTTCGTCTCCATTCCGTTGCTGTACCAACGACACCGCCAGCCACCGCCACCTCCTCTTCTCTTCCCCCCCGAAATCCTCGTGAATCTCTCGCTCTCTCGCCGCCGCCGCCGCCGCCGACGACGACGACCACCACGACGCTGCCTCGGATGCTCCCGGCCTCGCACCCGCTGCTCTACGCCTGCGCCTACCGGGACAGCGCCCTCGTCGCCGACCTCGCCCACGCCCCCCCGCCCCACGACGGCGGCGCCGCCGAGGACGACGCCCCGGCGGTCGCGGCCGCGCTCGTCGCCGGGGCGCCCGCGCACCACCGGCACGTCACCCACACGGCGTCGGGGCGGGCGCACGCGGTGCTCCTCGCGCCGCCGCTCGTGCTCGCGGCGGTCTCGCGGGCCCCGCAGCTGCCCTCGTCGCACCTGCTGCTCTTCCTCCGGCGGCTCCGATGCCTACCCGGGAACCGGATGCGGGACGAGATGCCGCGGCTGGCGCTGCGCCTGCCGTTCCCCGACGAGGAGGCGCTCGCGCGGGAGGCCGGGGAGGTGGCCGCAGCGGAGGCCGAGGCCGAGGAGGCGGAGCGGAGGGAAGGTGAGCTCGCGCGGAGGACG-CCCAAGAGGGAGCGCCGCGCCCACAGCGGCGGCGCCGGGTGGACGTGGAGGCGGAAGCTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAGGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAACCCAGTAGTGTAATTTTTTCGTTCATTTACTATACAAAGCAATTGTTGAAATTTTGCCTCATTGATCTTGTTTCCCCCCTATGTTGTTCAGGACAGACCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTCTGTTCATG] [+] EMBL AK065569 [CAGTCTGGCTCCCTTCGTCTCCATTCCGTTGCTGTACCAACGACACCGCCAGCCACCGCCACCTCCTCTTCTCTTCCCCCCCGAAATCCTCGTGAATCTCTCGCTCTCTCGCCGCCGCCGCCGCCGCCGACGACGACGACCACCACGACGCTGCCTCGGATGCTCCCGGCCTCGCACCCGCTGCTCTACGCCTGCGCCTACCGGGACAGCGCCCTCGTCGCCGACCTCGCCCACGCCCCCCCGCCCCACGACGGCGGCGCCGCCGAGGACGACGCCCCGGCGGTCGCGGCCGCGCTCGTCGCCGGGGCGCCCGCGCACCACCGGCACGTCACCCACACGGCGTCGGGGCGGGCGCACGCGGTGCTCCTCGCGCCGCCGCTCGTGCTCGCGGCGGTCTCGCGGGCCCCGCAGCTGCCCTCGTCGCACCTGCTGCTCTTCCTCCGGCGGCTCCGATGCCTACCCGGGAACCGGATGCGGGACGAGATGCCGCGGCTGGCGCTGCGCCTGCCGTTCCCCGACGAGGAGGCGCTCGCGCGGGAGGCCGGGGAGGTGGCCGCAGCGGAGGCCGAGGCCGAGGAGGCGGAGCGGAGGGAAGGTGAGCTCGCGCGGAGGACG CCCAAGAGGGAGCGCCGCGCCCACAGCGGCGGCGCCGGGTGGACGTGGAGGCGGAAGCTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAGGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAACCCAGTAGTGTAATTTTTTCGTTCATTTACTATACAAAGCAATTGTTGAAATTTTGCCTCATTGATCTTGTTTCCCCCCTATGTTGTTCAGGACAGACCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTC ] [+] EMBL CA766623 [ AGGACGAGACAAGGGGGAGCGCCGCGCCCGCAGCGGCGGCGCCGGGTGGACGTGGAGGCGGAAGCTGTGGCTCATCGCCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTNCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTNGAATTTGTTGGTTTGGTTGAGGACATCTGTNAACCCANNAGNGTAATTTTTTCGNTCATTTACTATACAAAGCAAATGTTGAAATTTTGCCTCATTGATCTTGNTNCCCCCCTATGTTGNTCAGGACAGACCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTCTGTTCATG] consensusID : consensus_4836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [AGACAAGGGGGAGCGCCGCGCCCGCAACGGCGGCGCCGGGTGGACGTGGAGGCGGAAACTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCGAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAACCCAGTAGGGTAATTTTTTCGTTCATTTACTATACAAAGCAAATGTTGAAATTTTGCCTCATTGATCTTGTTCCCCCCCTATGTTGTTCAGGACAGACCCAGATATATTTGAATCCTACTGTCATTACCATTCGCAATAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761921 [AGACAAGGGGGAGCGCCGCGCCCGCAACGGCGGCGCCGGGTGGACGTGGAGGCGGAAACTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCGAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAACCCAGTAGGGTAATTTTTTCGTTCATTTACTATACAAAGCAAATGTTGAAATTTTGCCTCATTGATCTTGTTCCCCCCCTATGTTGTTCAGGACAGACCCAGATATATTTGAATCCTACTGTCATTACCATTCGCAATAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4836#0 CAGTCTGGCTCCCTTCGTCTCCATTCCGTTGCTGTACCAACGACACCGCCAGCCACCGCC 60 consensus_4836#1 ------------------------------------------------------------ consensus_4836#0 ACCTCCTCTTCTCTTCCCCCCCGAAATCCTCGTGAATCTCTCGCTCTCTCGCCGCCGCCG 120 consensus_4836#1 ------------------------------------------------------------ consensus_4836#0 CCGCCGCCGACGACGACGACCACCACGACGCTGCCTCGGATGCTCCCGGCCTCGCACCCG 180 consensus_4836#1 ------------------------------------------------------------ consensus_4836#0 CTGCTCTACGCCTGCGCCTACCGGGACAGCGCCCTCGTCGCCGACCTCGCCCACGCCCCC 240 consensus_4836#1 ------------------------------------------------------------ consensus_4836#0 CCGCCCCACGACGGCGGCGCCGCCGAGGACGACGCCCCGGCGGTCGCGGCCGCGCTCGTC 300 consensus_4836#1 ------------------------------------------------------------ consensus_4836#0 GCCGGGGCGCCCGCGCACCACCGGCACGTCACCCACACGGCGTCGGGGCGGGCGCACGCG 360 consensus_4836#1 ------------------------------------------------------------ consensus_4836#0 GTGCTCCTCGCGCCGCCGCTCGTGCTCGCGGCGGTCTCGCGGGCCCCGCAGCTGCCCTCG 420 consensus_4836#1 ------------------------------------------------------------ consensus_4836#0 TCGCACCTGCTGCTCTTCCTCCGGCGGCTCCGATGCCTACCCGGGAACCGGATGCGGGAC 480 consensus_4836#1 ------------------------------------------------------------ consensus_4836#0 GAGATGCCGCGGCTGGCGCTGCGCCTGCCGTTCCCCGACGAGGAGGCGCTCGCGCGGGAG 540 consensus_4836#1 ------------------------------------------------------------ consensus_4836#0 GCCGGGGAGGTGGCCGCAGCGGAGGCCGAGGCCGAGGAGGCGGAGCGGAGGGAAGGTGAG 600 consensus_4836#1 ------------------------------------------------------------ consensus_4836#0 CTCGCGCGGAGGACGCCCAAGAGGGAGCGCCGCGCCCACAGCGGCGGCGCCGGGTGGACG 660 consensus_4836#1 --------------AGACAAGGGGGAGCGCCGCGCCCGCAACGGCGGCGCCGGGTGGACG 46 **** *************** ** ******************* consensus_4836#0 TGGAGGCGGAAGCTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTC 720 consensus_4836#1 TGGAGGCGGAAACTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTC 106 *********** ************************************************ consensus_4836#0 GCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAGGTAAAAAG 780 consensus_4836#1 GCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAG 166 *************************************************** ******** consensus_4836#0 GGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTAT 840 consensus_4836#1 GGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTAT 226 ************************************************************ consensus_4836#0 GCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAA 900 consensus_4836#1 GCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAA 286 ************************************************************ consensus_4836#0 AGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATG 960 consensus_4836#1 AGGCGAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATG 346 **** ******************************************************* consensus_4836#0 ACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTG 1020 consensus_4836#1 ACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTG 406 ************************************************************ consensus_4836#0 GTTTGGTTGAGGACATCTGTAAACCCAGTAGTGTAATTTTTTCGTTCATTTACTATACAA 1080 consensus_4836#1 GTTTGGTTGAGGACATCTGTAAACCCAGTAGGGTAATTTTTTCGTTCATTTACTATACAA 466 ******************************* **************************** consensus_4836#0 AGCAATTGTTGAAATTTTGCCTCATTGATCTTGTTTCCCCCCTATGTTGTTCAGGACAGA 1140 consensus_4836#1 AGCAAATGTTGAAATTTTGCCTCATTGATCTTGTTCCCCCCCTATGTTGTTCAGGACAGA 526 ***** ***************************** ************************ consensus_4836#0 CCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTCTG 1200 consensus_4836#1 CCCAGATATATTTGAATCCTACTGTCATTACCATTCGCAATAAAAAAAAAAAAAAAAAAA 586 *********** ********************** ******* *** ** consensus_4836#0 TTCATG 1206 consensus_4836#1 AAAAA- 591 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||