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Oryza sativa
cluster # 4836 cluster # 4836       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4836#0 length = 1206 sequences # 2  
consensus_4836#1 length = 591 sequences # 1  

consensusID : consensus_4836#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1206
fasta sequence
                              [CAGTCTGGCTCCCTTCGTCTCCATTCCGTTGCTGTACCAACGACACCGCCAGCCACCGCCACCTCCTCTTCTCTTCCCCCCCGAAATCCTCGTGAATCTCTCGCTCTCTCGCCGCCGCCGCCGCCGCCGACGACGACGACCACCACGACGCTGCCTCGGATGCTCCCGGCCTCGCACCCGCTGCTCTACGCCTGCGCCTACCGGGACAGCGCCCTCGTCGCCGACCTCGCCCACGCCCCCCCGCCCCACGACGGCGGCGCCGCCGAGGACGACGCCCCGGCGGTCGCGGCCGCGCTCGTCGCCGGGGCGCCCGCGCACCACCGGCACGTCACCCACACGGCGTCGGGGCGGGCGCACGCGGTGCTCCTCGCGCCGCCGCTCGTGCTCGCGGCGGTCTCGCGGGCCCCGCAGCTGCCCTCGTCGCACCTGCTGCTCTTCCTCCGGCGGCTCCGATGCCTACCCGGGAACCGGATGCGGGACGAGATGCCGCGGCTGGCGCTGCGCCTGCCGTTCCCCGACGAGGAGGCGCTCGCGCGGGAGGCCGGGGAGGTGGCCGCAGCGGAGGCCGAGGCCGAGGAGGCGGAGCGGAGGGAAGGTGAGCTCGCGCGGAGGACG-CCCAAGAGGGAGCGCCGCGCCCACAGCGGCGGCGCCGGGTGGACGTGGAGGCGGAAGCTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAGGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAACCCAGTAGTGTAATTTTTTCGTTCATTTACTATACAAAGCAATTGTTGAAATTTTGCCTCATTGATCTTGTTTCCCCCCTATGTTGTTCAGGACAGACCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTCTGTTCATG]

[+] EMBL AK065569             [CAGTCTGGCTCCCTTCGTCTCCATTCCGTTGCTGTACCAACGACACCGCCAGCCACCGCCACCTCCTCTTCTCTTCCCCCCCGAAATCCTCGTGAATCTCTCGCTCTCTCGCCGCCGCCGCCGCCGCCGACGACGACGACCACCACGACGCTGCCTCGGATGCTCCCGGCCTCGCACCCGCTGCTCTACGCCTGCGCCTACCGGGACAGCGCCCTCGTCGCCGACCTCGCCCACGCCCCCCCGCCCCACGACGGCGGCGCCGCCGAGGACGACGCCCCGGCGGTCGCGGCCGCGCTCGTCGCCGGGGCGCCCGCGCACCACCGGCACGTCACCCACACGGCGTCGGGGCGGGCGCACGCGGTGCTCCTCGCGCCGCCGCTCGTGCTCGCGGCGGTCTCGCGGGCCCCGCAGCTGCCCTCGTCGCACCTGCTGCTCTTCCTCCGGCGGCTCCGATGCCTACCCGGGAACCGGATGCGGGACGAGATGCCGCGGCTGGCGCTGCGCCTGCCGTTCCCCGACGAGGAGGCGCTCGCGCGGGAGGCCGGGGAGGTGGCCGCAGCGGAGGCCGAGGCCGAGGAGGCGGAGCGGAGGGAAGGTGAGCTCGCGCGGAGGACG CCCAAGAGGGAGCGCCGCGCCCACAGCGGCGGCGCCGGGTGGACGTGGAGGCGGAAGCTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAGGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAACCCAGTAGTGTAATTTTTTCGTTCATTTACTATACAAAGCAATTGTTGAAATTTTGCCTCATTGATCTTGTTTCCCCCCTATGTTGTTCAGGACAGACCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTC        ]
[+] EMBL CA766623             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGGACGAGACAAGGGGGAGCGCCGCGCCCGCAGCGGCGGCGCCGGGTGGACGTGGAGGCGGAAGCTGTGGCTCATCGCCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTNCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTNGAATTTGTTGGTTTGGTTGAGGACATCTGTNAACCCANNAGNGTAATTTTTTCGNTCATTTACTATACAAAGCAAATGTTGAAATTTTGCCTCATTGATCTTGNTNCCCCCCTATGTTGNTCAGGACAGACCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTCTGTTCATG]


>consensus_4836#0 CAGTCTGGCTCCCTTCGTCTCCATTCCGTTGCTGTACCAACGACACCGCCAGCCACCGCC ACCTCCTCTTCTCTTCCCCCCCGAAATCCTCGTGAATCTCTCGCTCTCTCGCCGCCGCCG CCGCCGCCGACGACGACGACCACCACGACGCTGCCTCGGATGCTCCCGGCCTCGCACCCG CTGCTCTACGCCTGCGCCTACCGGGACAGCGCCCTCGTCGCCGACCTCGCCCACGCCCCC CCGCCCCACGACGGCGGCGCCGCCGAGGACGACGCCCCGGCGGTCGCGGCCGCGCTCGTC GCCGGGGCGCCCGCGCACCACCGGCACGTCACCCACACGGCGTCGGGGCGGGCGCACGCG GTGCTCCTCGCGCCGCCGCTCGTGCTCGCGGCGGTCTCGCGGGCCCCGCAGCTGCCCTCG TCGCACCTGCTGCTCTTCCTCCGGCGGCTCCGATGCCTACCCGGGAACCGGATGCGGGAC GAGATGCCGCGGCTGGCGCTGCGCCTGCCGTTCCCCGACGAGGAGGCGCTCGCGCGGGAG GCCGGGGAGGTGGCCGCAGCGGAGGCCGAGGCCGAGGAGGCGGAGCGGAGGGAAGGTGAG CTCGCGCGGAGGACGCCCAAGAGGGAGCGCCGCGCCCACAGCGGCGGCGCCGGGTGGACG TGGAGGCGGAAGCTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTC GCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAGGTAAAAAG GGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTAT GCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAA AGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATG ACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTG GTTTGGTTGAGGACATCTGTAAACCCAGTAGTGTAATTTTTTCGTTCATTTACTATACAA AGCAATTGTTGAAATTTTGCCTCATTGATCTTGTTTCCCCCCTATGTTGTTCAGGACAGA CCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTCTG TTCATG



consensusID : consensus_4836#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence
                              [AGACAAGGGGGAGCGCCGCGCCCGCAACGGCGGCGCCGGGTGGACGTGGAGGCGGAAACTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCGAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAACCCAGTAGGGTAATTTTTTCGTTCATTTACTATACAAAGCAAATGTTGAAATTTTGCCTCATTGATCTTGTTCCCCCCCTATGTTGTTCAGGACAGACCCAGATATATTTGAATCCTACTGTCATTACCATTCGCAATAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761921             [AGACAAGGGGGAGCGCCGCGCCCGCAACGGCGGCGCCGGGTGGACGTGGAGGCGGAAACTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCGAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAACCCAGTAGGGTAATTTTTTCGTTCATTTACTATACAAAGCAAATGTTGAAATTTTGCCTCATTGATCTTGTTCCCCCCCTATGTTGTTCAGGACAGACCCAGATATATTTGAATCCTACTGTCATTACCATTCGCAATAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_4836#1 AGACAAGGGGGAGCGCCGCGCCCGCAACGGCGGCGCCGGGTGGACGTGGAGGCGGAAACT GTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGC AGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAGGGTGCTAGGTTTCA AGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGG AAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCGAATGTTAGC CTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAA TGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGAC ATCTGTAAACCCAGTAGGGTAATTTTTTCGTTCATTTACTATACAAAGCAAATGTTGAAA TTTTGCCTCATTGATCTTGTTCCCCCCCTATGTTGTTCAGGACAGACCCAGATATATTTG AATCCTACTGTCATTACCATTCGCAATAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4836#0      CAGTCTGGCTCCCTTCGTCTCCATTCCGTTGCTGTACCAACGACACCGCCAGCCACCGCC 60
consensus_4836#1      ------------------------------------------------------------
                                                                                  

consensus_4836#0      ACCTCCTCTTCTCTTCCCCCCCGAAATCCTCGTGAATCTCTCGCTCTCTCGCCGCCGCCG 120
consensus_4836#1      ------------------------------------------------------------
                                                                                  

consensus_4836#0      CCGCCGCCGACGACGACGACCACCACGACGCTGCCTCGGATGCTCCCGGCCTCGCACCCG 180
consensus_4836#1      ------------------------------------------------------------
                                                                                  

consensus_4836#0      CTGCTCTACGCCTGCGCCTACCGGGACAGCGCCCTCGTCGCCGACCTCGCCCACGCCCCC 240
consensus_4836#1      ------------------------------------------------------------
                                                                                  

consensus_4836#0      CCGCCCCACGACGGCGGCGCCGCCGAGGACGACGCCCCGGCGGTCGCGGCCGCGCTCGTC 300
consensus_4836#1      ------------------------------------------------------------
                                                                                  

consensus_4836#0      GCCGGGGCGCCCGCGCACCACCGGCACGTCACCCACACGGCGTCGGGGCGGGCGCACGCG 360
consensus_4836#1      ------------------------------------------------------------
                                                                                  

consensus_4836#0      GTGCTCCTCGCGCCGCCGCTCGTGCTCGCGGCGGTCTCGCGGGCCCCGCAGCTGCCCTCG 420
consensus_4836#1      ------------------------------------------------------------
                                                                                  

consensus_4836#0      TCGCACCTGCTGCTCTTCCTCCGGCGGCTCCGATGCCTACCCGGGAACCGGATGCGGGAC 480
consensus_4836#1      ------------------------------------------------------------
                                                                                  

consensus_4836#0      GAGATGCCGCGGCTGGCGCTGCGCCTGCCGTTCCCCGACGAGGAGGCGCTCGCGCGGGAG 540
consensus_4836#1      ------------------------------------------------------------
                                                                                  

consensus_4836#0      GCCGGGGAGGTGGCCGCAGCGGAGGCCGAGGCCGAGGAGGCGGAGCGGAGGGAAGGTGAG 600
consensus_4836#1      ------------------------------------------------------------
                                                                                  

consensus_4836#0      CTCGCGCGGAGGACGCCCAAGAGGGAGCGCCGCGCCCACAGCGGCGGCGCCGGGTGGACG 660
consensus_4836#1      --------------AGACAAGGGGGAGCGCCGCGCCCGCAACGGCGGCGCCGGGTGGACG 46
                                       **** *************** ** *******************

consensus_4836#0      TGGAGGCGGAAGCTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTC 720
consensus_4836#1      TGGAGGCGGAAACTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTC 106
                      *********** ************************************************

consensus_4836#0      GCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAGGTAAAAAG 780
consensus_4836#1      GCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAG 166
                      *************************************************** ********

consensus_4836#0      GGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTAT 840
consensus_4836#1      GGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTAT 226
                      ************************************************************

consensus_4836#0      GCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAA 900
consensus_4836#1      GCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAA 286
                      ************************************************************

consensus_4836#0      AGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATG 960
consensus_4836#1      AGGCGAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATG 346
                      **** *******************************************************

consensus_4836#0      ACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTG 1020
consensus_4836#1      ACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTG 406
                      ************************************************************

consensus_4836#0      GTTTGGTTGAGGACATCTGTAAACCCAGTAGTGTAATTTTTTCGTTCATTTACTATACAA 1080
consensus_4836#1      GTTTGGTTGAGGACATCTGTAAACCCAGTAGGGTAATTTTTTCGTTCATTTACTATACAA 466
                      ******************************* ****************************

consensus_4836#0      AGCAATTGTTGAAATTTTGCCTCATTGATCTTGTTTCCCCCCTATGTTGTTCAGGACAGA 1140
consensus_4836#1      AGCAAATGTTGAAATTTTGCCTCATTGATCTTGTTCCCCCCCTATGTTGTTCAGGACAGA 526
                      ***** ***************************** ************************

consensus_4836#0      CCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTCTG 1200
consensus_4836#1      CCCAGATATATTTGAATCCTACTGTCATTACCATTCGCAATAAAAAAAAAAAAAAAAAAA 586
                      *********** ********************** ******* ***  **          

consensus_4836#0      TTCATG 1206
consensus_4836#1      AAAAA- 591
                         *  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)