These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 342 fasta sequence [ATCCAAGAAGGCAAGGTTAATCAATCCCCATGTTCTTCTTCTCCAAGCTCCACCTACTCCTCTTCCAATTCCTCCTCGTGTGTGATTAATCCCCCTCTTCTTCTGCCTGCGTACGTACTCCTTAATTAATTAGCTCTTAGGGACGTTAATTAATCTCAGTTCTTGCCTCCTCTCCTCTCCTCTCATCTCACTTGTATGTTAATGTTAGTACTCCTTGTAATCGATCAATCAGTCCTCTTTTTTTGCATCCTTTTTTGTCTTCTTTTTCATTTTCCGTCGATTTCTTGGCTTCTCTCTTCATTTTACCTTTCATGTTTGCCTCTGCTCTGTATAAAAAAAAAA] [+] EMBL BI812586 [ATCCAAGAAGGCAAGGTTAATCAATCCCCATGTTCTTCTTCTCCAAGCTCCACCTACTCCTCTTCCAATTCCTCCTCGTGTGTGATTAATCCCCCTCTTCTTCTGCCTGCGTACGTACTCCTTAATTAATTAGCTCTTAGGGACGTTAATTAATCTCAGTTCTTGCCTCCTCTCCTCTCCTCTCATCTCACTTGTATGTTAATGTTAGTACTCCTTGTAATCGATCAATCAGTCCTCTTTTTTTGCATCCTTTTTTGTCTTCTTTTTCATTTTCCGTCGATTTCTTGGCTTCTCTCTTCATTTTACCTTTCATGTTTGCCTCTGCTCTGTATAAAAAAAAAA] [+] EMBL BM419500 [ ccGGACGTTAATTAATCTCAGTTCTTGCCTCCTCTCCTCTCCTCTCATCTCACTTGTATGTTAATGTTAGTACTCCTTGTAATCGATC ATCAGTCCTCTTTTTTTGCAaaaaaaaaa ] consensusID : consensus_4840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [AGAAGGGCCCAGGGGTTAATCACATCCCCATGTTCTTCTTCTCCACAGCTCCACCTACTCCTCTTCCCATTCCTCCTCGTGTGTGATTAATCCCCCTCTTCTTGCATGCACTGCGTACGTACTCCTTAATTAATTAGCTCTTAGGGACGTTAATTAATCTCAGTTCTTGCCTCCTCTCCTCTCCTCTCATCTCACTTGTATGTTAATTTAGTACTCCCTTGTAATCGATCCATCCGTCCTCTTTTTTTCCCAAAAAAAAAA] [+] EMBL BI812760 [AGAAGGGCCCAGGGGTTAATCACATCCCCATGTTCTTCTTCTCCACAGCTCCACCTACTCCTCTTCCCATTCCTCCTCGTGTGTGATTAATCCCCCTCTTCTTGCATGCACTGCGTACGTACTCCTTAATTAATTAGCTCTTAGGGACGTTAATTAATCTCAGTTCTTGCCTCCTCTCCTCTCCTCTCATCTCACTTGTATGTTAATTTAGTACTCCCTTGTAATCGATCCATCCGTCCTCTTTTTTTCCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4840#0 ATCCAAGAAGGC---AAGGTTAATCA-ATCCCCATGTTCTTCTTCTCCA-AGCTCCACCT 55 consensus_4840#1 ----AGAAGGGCCCAGGGGTTAATCACATCCCCATGTTCTTCTTCTCCACAGCTCCACCT 56 * * *** ********* ********************** ********** consensus_4840#0 ACTCCTCTTCCAATTCCTCCTCGTGTGTGATTAATCCCCCTCTTCTTCTGC---CTGCGT 112 consensus_4840#1 ACTCCTCTTCCCATTCCTCCTCGTGTGTGATTAATCCCCCTCTTCTTGCATGCACTGCGT 116 *********** *********************************** ****** consensus_4840#0 ACGTACTCCTTAATTAATTAGCTCTTAGGGACGTTAATTAATCTCAGTTCTTGCCTCCTC 172 consensus_4840#1 ACGTACTCCTTAATTAATTAGCTCTTAGGGACGTTAATTAATCTCAGTTCTTGCCTCCTC 176 ************************************************************ consensus_4840#0 TCCTCTCCTCTCATCTCACTTGTATGTTAATGTTAGTACTCC-TTGTAATCGATCAATCA 231 consensus_4840#1 TCCTCTCCTCTCATCTCACTTGTATGTTAAT-TTAGTACTCCCTTGTAATCGATCCATCC 235 ******************************* ********** ************ *** consensus_4840#0 GTCCTCTTTTTTTGCATCCTTTTTTGTCTTCTTTTTCATTTTCCGTCGATTTCTTGGCTT 291 consensus_4840#1 GTCCTCTTTTTTTCCCAAAAAAAAAA---------------------------------- 261 ************* * consensus_4840#0 CTCTCTTCATTTTACCTTTCATGTTTGCCTCTGCTCTGTATAAAAAAAAAA 342 consensus_4840#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||