These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 893 fasta sequence [GCCCGCCGCCTGCGCCGATCTCCATTCCGTGAGCAGAGCAGAGTCAACTTCCGCCGAATCTGCTCACCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCTCTCCGCATCCTCGGTGCTTCTATATGAAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGAGTGGTCAAGGGAGGTAGAGCCAGAGGCAAGGAGTAGGAGGGAAAGGGGATGGTGCCTCTTCTTGGCTGCTTCAGTTCTTTTTTCCTCTCGGCCACAAGCAAATCAGCCAAGACTCTGTTTTAGATGGCGCCGAAGGCCACGGTGAGGCAGGGTTCGACAGAGGGATAGCCGTGACACTGTAGATGAGGGCACCAGAGGCTGCCATTACGCCGTCGAGGAGGTGGGGGATGCTTCCATGGTTTTTCTCGCACCGGTGGGCGAGGCAGCCGTGATATCTCTCCTGGATCTCAGTAAGCAAGCAAGCACGTTCCCAGGGCTATCGAGGAGGCAGTCACAATGACCCTGATGGTCTTCAGCGAGGCATATATGAATTCCTTTGTCGCAGGTGGCGATGCAGTCCCGACGCTAATCATGTTGATGGGCGAGGTGGTCAAGGCCTCTCTCCTTTACGAGGTGGGCTAATCGTGTCAGTTTTTTTTCTACATCTTTGTGGTAGAAACTAAGAAATCATATTATTTAGGTCAAAGAAATATAATCTTGTAATCTGAACATCTAAAGATATGTAATCTGCATATGAAGA-TACAACACTGAAG] [+] EMBL CB666254 [GCCCGCCGCCTGCGCCGATCTCCATTCCGTGAGCAGAGCAGAGTCAACTTCCGCCGAATCTGCTCACCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCTCTCCGCATCCTCGGTGCTTCTATATGAAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGAGTGGTCAAGGGAGGTAGAGCCAGAGGCAAGGAGTAGGAGGGAAAGGGGATGGTGCCTCTTCTTGGCTGCTTCAGTTCTTTTTTCCTCTCGGCCACAAGCAAATCAGCCAAGACTCTGTTTTAGATGGCGCCGAAGGCCACGGTGAGGCAGGGTTCGACAGAGGGATAGCCGTGACACTGTAGATGAGGGCACCAGAGGCTGCCATTACGCCGTCGAGGAGGTGGGGGATGCTTCCATGGTTTTTCTCGCACCGGTGGGCGAGGCAGCCGTGATATCTCTCCTGGATCTCAGTAAGCAAGCAAGCACGTTCCCAGGGCTATCGAGGAGGCAGTCACAATGACCCTGATGGTCTTCAGCGAGGCATATATGAATTCCTTTGTCGCAGGTGGCGATGCAGTCCCGACGCTAATCATGTTGATGGGCGAGGTGGTCAAGGCCTCTCTCCTTTACGAGGTGGGCTAATCGTGTCAGTTTTTTTTCTACATCTTTGTGGTAGAAACTAAGAAATCATATTATTTAGGTCAAAGAAATATAATCTTGTAATCTGAACATCTAAAGATATGTAATCTGCATATGAAGA TACA ] [-] EMBL CB666255 [ TCTCTCCGCATCCTCGGTGGTGAGCATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCTCTCCGCATCCTCGGTGCTTCTATATGAAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGAGTGGTCAAGGGAGGTAGAGCCAGAGGCAAGGAGTAGGAGGGAAAGGGGATGGTGCCTCTTCTTGGCTGCTTCAGTTCTTTTTTCCTCTCGGCCACAAGCAAATCAGCCAAGACTCTGTTTTAGATGGCGCCGAAGGCCACGGTGAGGCAGGGTTCGACAGAGGGATAGCCGTGACACTGTAGATGAGGGCACCAGAGGCTGCCATTACGCCGTCGAGGAGGTGGGGGATGCTTCCATGGTTTTTCTCGCACCGGTGGGCGAGGCAGCCGTGATATCTCTCCTGGATCTCAGTAAGCAAGCAAGCACGTTCCCAGGGCTATCGAGGAGGCAGTCACAATGACCCTGATGGTCTTCAGCGAGGCATATATGAATTCCTTTGTCGCAGGTGGCGATGCAGTCCCGACGCTAATCATGTTGATGGGCGAGGTGGTCAAGGCCTCTCTCCTTTACGAGGTGGGCTAATCGTGTCAGTTTTTTTTCTACATCTTGGTGGTAGAAACTAAGAAATCATATTATTTAGGTCAAAGAAATATAATCTTGTAATCTGAACATCTAAAGATAGGTAATCTGCATATGAAGATTACAACACTGAAG] consensusID : consensus_4845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [CTGTGAACGCGTGGGTGCCGCGCCACAGCCGAGCACTGCCAACGCCGGGCGCCACCACCCTGCTGGCTGCCGCCGAGCGCNGCCACCCCACCTGCCGCCGAGCAGCCCACCATCCATCTGCAATCGTGCATCTGATCTTCCAATTGATGCTTCTATATGAAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGGAGTTGTCAAGGTCAGAATTTCCTTTTTTTACTCTTAAGNCTTAACTAGTGGAGGTAACTGCTATGTATGCCCCATCTCCTGCAAAAAAAATTTTCTGAATATGCCGCCCCTTTTGCANATTTGATCATGTAGGNCAAGTTCATTGGGGGATAAATTTTTNTTGGGTAATTTTATCAGAGCTATNTAGATTGGGTTTNAAAT] [+] EMBL AU029688 [CTGTGAACGCGTGGGTGCCGCGCCACAGCCGAGCACTGCCAACGCCGGGCGCCACCACCCTGCTGGCTGCCGCCGAGCGCNGCCACCCCACCTGCCGCCGAGCAGCCCACCATCCATCTGCAATCGTGCATCTGATCTTCCAATTGATGCTTCTATATGAAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGGAGTTGTCAAGGTCAGAATTTCCTTTTTTTACTCTTAAGNCTTAACTAGTGGAGGTAACTGCTATGTATGCCCCATCTCCTGCAAAAAAAATTTTCTGAATATGCCGCCCCTTTTGCANATTTGATCATGTAGGNCAAGTTCATTGGGGGATAAATTTTTNTTGGGTAATTTTATCAGAGCTATNTAGATTGGGTTTNAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4845#0 GCCCGCCGCCTGCGCCGATCTCCATTCCGTGAGCAGAGCAGAGTCAACTTCCGCCGAATC 60 consensus_4845#1 -----------------------------------------------------------C 1 * consensus_4845#0 TGCTCACCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGC 120 consensus_4845#1 TGTGAACGCGTGGGTGCCGCGCCACAGCCGAGCACTGCCAACGC-----CGGGCGCCACC 56 ** ** * * * * * * * ** * *** *** * * * consensus_4845#0 ATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCC 180 consensus_4845#1 ACCC-TGCTGGCTGCCGCCGAGCGCNGCCACCCCACCTGCCGCCGAGCAGCCCACCATCC 115 * ** * * * * * * * * ** ** * * * ***** consensus_4845#0 ATTCAATCCAATCCTCTTTCTCATCTCTCTCTCTCTCCGCATCCTCGGTGCTTCTATATG 240 consensus_4845#1 ATCTG---CAATCGTGCATCTGATCTTCCA-------------ATTGATGCTTCTATATG 159 ** ***** * *** **** * * * ************ consensus_4845#0 AAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGG- 299 consensus_4845#1 AAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGG 219 *********************************************************** consensus_4845#0 AGTGGTCAAGGGAGGTAGAGCCAGAGGCAAGGAGTAGGAGGGAAAGGGGATGGTGCCTCT 359 consensus_4845#1 AGTTGTCAAGGTCAGAATTTCCTTTTTTTACTCTTAAGNCTTAACTAG--TGGAGG---- 273 *** ******* * * ** * ** * ** * *** * consensus_4845#0 TCTTGGCTGCTTCAGTTCTTTTTTCCTCTCGGCCACAAGCAAATCAGCCAAGACTCTGTT 419 consensus_4845#1 ---TAACTGCT---ATGTATGCCCCATCTCCTGCAAAAAAAATTTTCTGAATATGCCGCC 327 * ***** * * * **** ** ** ** * ** * * * consensus_4845#0 TTAGATGGCGCCGAAGGCCACGGTGAGGCAGGGTTCGACAGAGGGATAGCCGTGACACTG 479 consensus_4845#1 CCTTTTG-CANATTTGATCATGT--AGGNCAAGTTC-ATTGGGGGATAAATTTT---TNT 380 ** * * ** * *** **** * * ****** * consensus_4845#0 TAGATGAGGGCACCAGAGGCTGCCATTACGCCGTCGAGGAGGTGGGGGATGCTTCCATGG 539 consensus_4845#1 TGGGTAATTTTATCAGAG-CTATNTAGATTGGGTTTNAAAT------------------- 420 * * * * * ***** ** * ** * consensus_4845#0 TTTTTCTCGCACCGGTGGGCGAGGCAGCCGTGATATCTCTCCTGGATCTCAGTAAGCAAG 599 consensus_4845#1 ------------------------------------------------------------ consensus_4845#0 CAAGCACGTTCCCAGGGCTATCGAGGAGGCAGTCACAATGACCCTGATGGTCTTCAGCGA 659 consensus_4845#1 ------------------------------------------------------------ consensus_4845#0 GGCATATATGAATTCCTTTGTCGCAGGTGGCGATGCAGTCCCGACGCTAATCATGTTGAT 719 consensus_4845#1 ------------------------------------------------------------ consensus_4845#0 GGGCGAGGTGGTCAAGGCCTCTCTCCTTTACGAGGTGGGCTAATCGTGTCAGTTTTTTTT 779 consensus_4845#1 ------------------------------------------------------------ consensus_4845#0 CTACATCTTTGTGGTAGAAACTAAGAAATCATATTATTTAGGTCAAAGAAATATAATCTT 839 consensus_4845#1 ------------------------------------------------------------ consensus_4845#0 GTAATCTGAACATCTAAAGATATGTAATCTGCATATGAAGATACAACACTGAAG 893 consensus_4845#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||