These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [CGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTTGCTCATCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATACGAGGGTTCGTATTGTTCTAGATCTTGTATGAGCATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAAGGCAAAAAGCTATCTAAAGTGATCATCATGTATTTCATGTTTCCATCAGCCAGGTGCCCAGGTGTTTTGCCACAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTGACTTAAAGGAGTTGTGCTACAAGATAAATCGTTTGTCTCATCTGTATGCCTTCGATGCCTATTATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCTATTCTCTTGTCTAATAAAATAGTGTATTTTACATATATTATATGGCTTACTGAACTTTCAGTATAATTTTTGTTGTCATCAGAAATATTGAAACATATATATTCATATTACAAAAAAA] [+] EMBL CB678864 [CGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTTGCTCATCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATACGAGGGTTCGTATTGTTCTAGATCTTGTATGAGCATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAAGGCAAAAAGCTATCTAAAGTGATCATCATGTATTTCATGTTTCCATCAGCCAGGTGCCCAGGTGTTTTGCCACAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTGACTTAAAGGAGTTGTGCTACAAGATAAATCGTTTGTCTCATCTGTATGCCTTCGATGCCTATTATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCTATTCTCTTGTCTAATAAAATAGTGTATTTTACATATATTATATGGCTTACTGAACTTTCAGTATAATTTTTGTTGTCATCAGAAATATTGAAACATATATATTCATATTACAAAAAAA] consensusID : consensus_4848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [GCAGATCTAATTGGCGCTGCTGCCTCCCCACGGAGCTCCATCTCGCGAAGCTACTTGGCGCCGCCACCGCGGTGTTCCGCCCCGTCGAGCTCGCGGGGCTGGCCGGCGCCCTTGCCACCTTGCCGTCCAGCTCGCAGAGCTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGGCCTCGCGGAACCAGCCGGCGCCATCGCCACCTTTCTGTCTGGCTGCTCAGCGGCGCCGCCCCCGCGGTATTGCACCCCGTCGAGCTCGCGCAGCTGGCCGGCGCCATTGCCACCTTGCCGTCCAGCTCGCAGAACTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTTGCTCAGCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATACGAGGGTTCGTATGTAAGTTGTATCTTACCAACTATTTACCAGTTTGTCAAGTGGGTGCTAATCTCTGGTTAAAAGAAAATAATATGATT] [+] EMBL AK068141 [GCAGATCTAATTGGCGCTGCTGCCTCCCCACGGAGCTCCATCTCGCGAAGCTACTTGGCGCCGCCACCGCGGTGTTCCGCCCCGTCGAGCTCGCGGGGCTGGCCGGCGCCCTTGCCACCTTGCCGTCCAGCTCGCAGAGCTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGGCCTCGCGGAACCAGCCGGCGCCATCGCCACCTTTCTGTCTGGCTGCTCAGCGGCGCCGCCCCCGCGGTATTGCACCCCGTCGAGCTCGCGCAGCTGGCCGGCGCCATTGCCACCTTGCCGTCCAGCTCGCAGAACTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTTGCTCAGCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATACGAGGGTTCGTATGTAAGTTGTATCTTACCAACTATTTACCAGTTTGTCAAGTGGGTGCTAATCTCTGGTTAAAAGAAAATAATATGATT] consensusID : consensus_4848#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [TGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGGCTGTTAATCTGGTGCTTCCTTATATCTTTTTGCAGTGTTCTAGATCTTGTAGGAGCATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAAGGCCAAAAGCTATCTAAAGTGATCATCATGTATTTCATGTTTCCATCAGCCAGGTGCCCAGGTGTTTTGCCAGAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTGACTTAAAGGAGTTGTGCTACAAGATAAATCGTTTGTCTCATCTGTATGCCTTCGATGCCTATTATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCGATTCTCTTGTCTAATAAATAGTGTATTTTACATATATTATATGGCTTAGTGAACTTTCAGTATAATTTTTGTTGTCATCAGAAATATTTGAAACATATATATTCATATTCATACTAAAA] [+] EMBL BI806818 [TGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGGCTGTTAATCTGGTGCTTCCTTATATCTTTTTGCAGTGTTCTAGATCTTGTAGGAGCATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAAGGCCAAAAGCTATCTAAAGTGATCATCATGTATTTCATGTTTCCATCAGCCAGGTGCCCAGGTGTTTTGCCAGAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTGACTTAAAGGAGTTGTGCTACAAGATAAATCGTTTGTCTCATCTGTATGCCTTCGATGCCTATTATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCGATTCTCTTGTCTAATAAATAGTGTATTTTACATATATTATATGGCTTAGTGAACTTTCAGTATAATTTTTGTTGTCATCAGAAATATTTGAAACATATATATTCATATTCATACTAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4848#0 CGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTT 60 consensus_4848#2 ------------------------------------------------------------ consensus_4848#1 ------------------------------------------------------------ consensus_4848#0 GCTCATCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGA--TGTTTGA- 117 consensus_4848#2 ------------------------TGCTGCTTGGAGATTAGGATCACAGA--TGTTTGA- 33 consensus_4848#1 -GCAGATCTAATTGGCGCTGCTGCCTCCCCACGGAGCTCCATCTCGCGAAGCTACTTGGC 59 * * **** * ** * * * *** consensus_4848#0 GCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGA 177 consensus_4848#2 GCAAGCAGTAAATCGACAGAAGG-GCTG-----------TTAATCTGGTGCTTCCTTATA 81 consensus_4848#1 GCCGCCACCGCGGTGTTCCGCCCCGTCGAGCTCGCGGGGCTGGCCGGCGCCCTTGCCACC 119 ** ** * * * * * consensus_4848#0 TCACGAACACACTGAGAGATATAAATACGAGGGTTCGTATTGTTCTAGATCTTGTATGAG 237 consensus_4848#2 TCTT-----------------------------TTTGCAGTGTTCTAGATCTTGTAGGAG 112 consensus_4848#1 TTGCCGTCCAGCTCGCAGAGCTGC-TCGGCGCTGCAGCGGCGTTCCA--TCCCGTCGGCC 176 * * **** * ** ** * consensus_4848#0 -CATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAA--GGCA 294 consensus_4848#2 -CATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAA--GGCC 169 consensus_4848#1 TCGCGGAACCAGCCGGCGCCATCGCCAC-CTTTCTGTCTGGCTGCTCAGCGGCGCCGCCC 235 * * * * * * ** * * * ** * ** *** * ** * * * consensus_4848#0 AAAAGCTATCTAAAGTGATCA---TCATGTATTTCAT-GTTTCCATCAGCCAGGTGCCCA 350 consensus_4848#2 AAAAGCTATCTAAAGTGATCA---TCATGTATTTCAT-GTTTCCATCAGCCAGGTGCCCA 225 consensus_4848#1 CCGCGGTATTGCACCCCGTCGAGCTCGCGCAGCTGGCCGGCGCCATT-GCCACCTTGCCG 294 * *** * ** ** * * * * **** **** * ** consensus_4848#0 GGTGTTTTGCCACAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTG--AC 408 consensus_4848#2 GGTGTTTTGCCAGAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTG--AC 283 consensus_4848#1 TCCAGCTCGCAGAACTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGAGCTCGCGGAAC 354 * ** * * * ** * ** * * * * ** * ** consensus_4848#0 TTAAAGGAGTTGT-GCTACAAGATAAATCGTTTGTCTCATCTGTATGC----CTTCGATG 463 consensus_4848#2 TTAAAGGAGTTGT-GCTACAAGATAAATCGTTTGTCTCATCTGTATGC----CTTCGATG 338 consensus_4848#1 CAGCCGGCGCCATCGCCACCTTGCTGTCCGGTTG-CTCAGCTTTCCTCTCCTCTTCAGTG 413 ** * * ** ** ** *** **** ** * * **** ** consensus_4848#0 CCTATT----ATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCTATTCT 519 consensus_4848#2 CCTATT----ATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCGATTCT 394 consensus_4848#1 CTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCA 473 * ** ** * ** * * ***** * ** * * * ** consensus_4848#0 CTTGTCTAATAAAATAGTGTATTTTACATATATTATATG-GCTTACTGAACTTTCAGTAT 578 consensus_4848#2 CTTGTCTAATAAA-TAGTGTATTTTACATATATTATATG-GCTTAGTGAACTTTCAGTAT 452 consensus_4848#1 CTTTCTGGACTTAATT-TGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATAC 532 *** * * * *** *** **** ** * * ** * * * ** consensus_4848#0 AATT-TTTGT-TGTCATCAGAAATATT-GAAACATATA-----TATTCATATT-ACAAAA 629 consensus_4848#2 AATT-TTTGT-TGTCATCAGAAATATTTGAAACATATA-----TATTCATATTCATACTA 505 consensus_4848#1 GAGGGTTCGTATGTAAGTTGTATCTTACCAACTATTTACCAGTTTGTCAAGTGGGTGCTA 592 * ** ** *** * * * * ** ** ** * *** * * consensus_4848#0 AAA-------------------------- 632 consensus_4848#2 AAA-------------------------- 508 consensus_4848#1 ATCTCTGGTTAAAAGAAAATAATATGATT 621 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||