These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 415 fasta sequence [AGCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGCGTCGAGGACGCCGGCGCGGCGGCCGGCGAGGCGGCCGGCGCCAACGCCGCCTCGAACATCGCCGCCGGCGCCGCGGC-GGGCATGGCCGCGGACGCCGCGG-ACTCGGCGGCGGCGAACATCGGCGCCTATATACCGGAGGCCGGGTACAACCCGGGGAAGCTGTGCGACAACGCGGTGGTGATGGACTCGTGCGTGG-AGGTGCTCCCGAGGATCCCCGGCGCGCTGACGGCGCCGGACTACCGCGCGCTCGCCGTGATCCTGGACGCGTACGCGTGGAAGCTGGTGCAGGGGTCGCGG] [+] EMBL AU183048 [AGCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGCGTCGAGGACGCCGGCGCGGCGGCCGGCGAGGCGGCCGGCGCCAACGCCGCCTCGAACATCGCCGCCGGCGCCGCGGC GGGCATGGCCGCGGACGCCGCGG ACTCGGCGGCGGCGAACATCGGCGCCTATATACCGGAGGCCGGGTACAACCCGGGGAAGCTGTGCGACAACGCGGTGGTGATGGACTCGTGCGTGG AGGTGCTCCCGAGGATCCCCGGCGCGCTGACGGCGCCGGACTACCGCGCGCTCGCCGTGATCCTGGACGCGTACGCGTGGAAGCTGGTGCAGGGGTCGCGG] [+] EMBL C72030 [ GCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGG GTCGCGGACG CGNCGCGGCGGCCGGNGAGGCGGCCGGCGCCAACGNCGCCTCGAACATCGCCGCCGG NCCGCGGCGGGGCATGGCCGCGGACGCNGCGGAACTCGGCGGCGGCGAACATCGGCGCCTATATACCGGA GCCGGGTACAANCCGGGGAAGCTGTNCGACAACGCGGTGGTGATGGACTCGTGCGTGGAAGGTGCTTCCGAaggnt ] consensusID : consensus_4851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence [CCTATCACGCTGCTCGTNCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGNCACCGNCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGGTCCGCGGACGGNCGNCGGCGGCCGGCGANGGCGGCCGGCGNCAACGCGNCTCGAACATNGNCGNNGGNCCGCGGGGNGCATGGCCGNGGACGNNGNGGACTCGGCGGGGCGAACATCGGCGCCTATATACCGGAGCCGGGTACAACCNGGGGGAAGCTGTNCGACAACGGGTGGTNATGGACTCGTGCNTGGAAGGTGTTCCGA] [+] EMBL AU069697 [CCTATCACGCTGCTCGTNCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGNCACCGNCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGGTCCGCGGACGGNCGNCGGCGGCCGGCGANGGCGGCCGGCGNCAACGCGNCTCGAACATNGNCGNNGGNCCGCGGGGNGCATGGCCGNGGACGNNGNGGACTCGGCGGGGCGAACATCGGCGCCTATATACCGGAGCCGGGTACAACCNGGGGGAAGCTGTNCGACAACGGGTGGTNATGGACTCGTGCNTGGAAGGTGTTCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4851#0 AGCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGC 60 consensus_4851#1 ----------------CCTATCACGCTGCTCGTNCTGTCACTCCTCCTCCTCGCCGTCGC 44 ***************** ************************** consensus_4851#0 CGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGCGT 120 consensus_4851#1 CGCCGNCACCGNCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGGTC 104 ***** ***** ********************************************* consensus_4851#0 CGAGGACGCCGGCGCGGCGGCCGGCGAGG-CGGCCGGCGCCAACGCCGCCTCGAACATCG 179 consensus_4851#1 CGCGGACGGNCGN-CGGCGGCCGGCGANGGCGGCCGGCGNCAACGC-GNCTCGAACATNG 162 ** ***** * ************* * ********* ****** * ********* * consensus_4851#0 CCGCCGGCGCCGCGGCGGGCATGGCCGCGGACGCCGCGGACTCGGCGGCGGCGAACATCG 239 consensus_4851#1 NCGNNGGN-CCGCGGGGNGCATGGCCGNGGACGNNGNGGACTCGGCGG-GGCGAACATCG 220 ** ** ****** * ********* ***** * *********** *********** consensus_4851#0 GCGCCTATATACCGGAGGCCGGGTACAACCCGGGG-AAGCTGTGCGACAACGCGGTGGTG 298 consensus_4851#1 GCGCCTATATACCGGAG-CCGGGTACAACCNGGGGGAAGCTGTNCGACAACG-GGTGGTN 278 ***************** ************ **** ******* ******** ****** consensus_4851#0 ATGGACTCGTGCGTGGAGGTGCTCCCGAGGATCCCCGGCGCGCTGACGGCGCCGGACTAC 358 consensus_4851#1 ATGGACTCGTGCNTGGAAGGTGTTCCGA-------------------------------- 306 ************ **** * * **** consensus_4851#0 CGCGCGCTCGCCGTGATCCTGGACGCGTACGCGTGGAAGCTGGTGCAGGGGTCGCGG 415 consensus_4851#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||