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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4851 cluster # 4851       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4851#0 length = 415 sequences # 2  
consensus_4851#1 length = 306 sequences # 1  

consensusID : consensus_4851#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 415
fasta sequence
                              [AGCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGCGTCGAGGACGCCGGCGCGGCGGCCGGCGAGGCGGCCGGCGCCAACGCCGCCTCGAACATCGCCGCCGGCGCCGCGGC-GGGCATGGCCGCGGACGCCGCGG-ACTCGGCGGCGGCGAACATCGGCGCCTATATACCGGAGGCCGGGTACAACCCGGGGAAGCTGTGCGACAACGCGGTGGTGATGGACTCGTGCGTGG-AGGTGCTCCCGAGGATCCCCGGCGCGCTGACGGCGCCGGACTACCGCGCGCTCGCCGTGATCCTGGACGCGTACGCGTGGAAGCTGGTGCAGGGGTCGCGG]

[+] EMBL AU183048             [AGCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGCGTCGAGGACGCCGGCGCGGCGGCCGGCGAGGCGGCCGGCGCCAACGCCGCCTCGAACATCGCCGCCGGCGCCGCGGC GGGCATGGCCGCGGACGCCGCGG ACTCGGCGGCGGCGAACATCGGCGCCTATATACCGGAGGCCGGGTACAACCCGGGGAAGCTGTGCGACAACGCGGTGGTGATGGACTCGTGCGTGG AGGTGCTCCCGAGGATCCCCGGCGCGCTGACGGCGCCGGACTACCGCGCGCTCGCCGTGATCCTGGACGCGTACGCGTGGAAGCTGGTGCAGGGGTCGCGG]
[+] EMBL C72030               [ GCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGG GTCGCGGACG CGNCGCGGCGGCCGGNGAGGCGGCCGGCGCCAACGNCGCCTCGAACATCGCCGCCGG NCCGCGGCGGGGCATGGCCGCGGACGCNGCGGAACTCGGCGGCGGCGAACATCGGCGCCTATATACCGGA GCCGGGTACAANCCGGGGAAGCTGTNCGACAACGCGGTGGTGATGGACTCGTGCGTGGAAGGTGCTTCCGAaggnt                                                                                    ]


>consensus_4851#0 AGCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGC CGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGCGT CGAGGACGCCGGCGCGGCGGCCGGCGAGGCGGCCGGCGCCAACGCCGCCTCGAACATCGC CGCCGGCGCCGCGGCGGGCATGGCCGCGGACGCCGCGGACTCGGCGGCGGCGAACATCGG CGCCTATATACCGGAGGCCGGGTACAACCCGGGGAAGCTGTGCGACAACGCGGTGGTGAT GGACTCGTGCGTGGAGGTGCTCCCGAGGATCCCCGGCGCGCTGACGGCGCCGGACTACCG CGCGCTCGCCGTGATCCTGGACGCGTACGCGTGGAAGCTGGTGCAGGGGTCGCGG



consensusID : consensus_4851#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence
                              [CCTATCACGCTGCTCGTNCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGNCACCGNCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGGTCCGCGGACGGNCGNCGGCGGCCGGCGANGGCGGCCGGCGNCAACGCGNCTCGAACATNGNCGNNGGNCCGCGGGGNGCATGGCCGNGGACGNNGNGGACTCGGCGGGGCGAACATCGGCGCCTATATACCGGAGCCGGGTACAACCNGGGGGAAGCTGTNCGACAACGGGTGGTNATGGACTCGTGCNTGGAAGGTGTTCCGA]

[+] EMBL AU069697             [CCTATCACGCTGCTCGTNCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGNCACCGNCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGGTCCGCGGACGGNCGNCGGCGGCCGGCGANGGCGGCCGGCGNCAACGCGNCTCGAACATNGNCGNNGGNCCGCGGGGNGCATGGCCGNGGACGNNGNGGACTCGGCGGGGCGAACATCGGCGCCTATATACCGGAGCCGGGTACAACCNGGGGGAAGCTGTNCGACAACGGGTGGTNATGGACTCGTGCNTGGAAGGTGTTCCGA]


>consensus_4851#1 CCTATCACGCTGCTCGTNCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGNCACCGNCGCC ACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGGTCCGCGGACGGNCGNCGG CGGCCGGCGANGGCGGCCGGCGNCAACGCGNCTCGAACATNGNCGNNGGNCCGCGGGGNG CATGGCCGNGGACGNNGNGGACTCGGCGGGGCGAACATCGGCGCCTATATACCGGAGCCG GGTACAACCNGGGGGAAGCTGTNCGACAACGGGTGGTNATGGACTCGTGCNTGGAAGGTG TTCCGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4851#0      AGCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGC 60
consensus_4851#1      ----------------CCTATCACGCTGCTCGTNCTGTCACTCCTCCTCCTCGCCGTCGC 44
                                      ***************** **************************

consensus_4851#0      CGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGCGT 120
consensus_4851#1      CGCCGNCACCGNCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGGTC 104
                      ***** ***** *********************************************   

consensus_4851#0      CGAGGACGCCGGCGCGGCGGCCGGCGAGG-CGGCCGGCGCCAACGCCGCCTCGAACATCG 179
consensus_4851#1      CGCGGACGGNCGN-CGGCGGCCGGCGANGGCGGCCGGCGNCAACGC-GNCTCGAACATNG 162
                      ** *****   *  ************* * ********* ****** * ********* *

consensus_4851#0      CCGCCGGCGCCGCGGCGGGCATGGCCGCGGACGCCGCGGACTCGGCGGCGGCGAACATCG 239
consensus_4851#1      NCGNNGGN-CCGCGGGGNGCATGGCCGNGGACGNNGNGGACTCGGCGG-GGCGAACATCG 220
                       **  **  ****** * ********* *****  * *********** ***********

consensus_4851#0      GCGCCTATATACCGGAGGCCGGGTACAACCCGGGG-AAGCTGTGCGACAACGCGGTGGTG 298
consensus_4851#1      GCGCCTATATACCGGAG-CCGGGTACAACCNGGGGGAAGCTGTNCGACAACG-GGTGGTN 278
                      ***************** ************ **** ******* ******** ****** 

consensus_4851#0      ATGGACTCGTGCGTGGAGGTGCTCCCGAGGATCCCCGGCGCGCTGACGGCGCCGGACTAC 358
consensus_4851#1      ATGGACTCGTGCNTGGAAGGTGTTCCGA-------------------------------- 306
                      ************ **** *   * ****                                

consensus_4851#0      CGCGCGCTCGCCGTGATCCTGGACGCGTACGCGTGGAAGCTGGTGCAGGGGTCGCGG 415
consensus_4851#1      ---------------------------------------------------------
                                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)