cluster # 4852

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4852 cluster # 4852 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4852#0 length = 221 sequences # 2

consensus_4852#1 length = 213 sequences # 1

consensusID : consensus_4852#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 221
fasta sequence

                              [TTTTTTGAATTTTTTTAGTTTTTTTGTTTGGTTTTTTCTAAGCTTTTGAAAAAAACTTAAAAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCACATTTGTTGAAAGGTGGAGAGGGAAGCAAGAATGGATCCTCCAATCCAAACTGAATATTTTCTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG]

[+] EMBL AU165188             [TTTTTTGAATTTTTTTAGTTTTTTTGTTTGGTTTTTTCTAAGCTTTTGAAAAAAACTTAAAAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCACATTTGTTGAAAGGTGGAGAGGGAAGCAAGAATGGATCCTCCAATCCAAACTGAATATTTTCTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATG ]
[-] EMBL AU165187             [ TTTTTGAATTTTTTTAGTTTTTTTGTTTGGGCCGTTCTAAGCCTTTGAAAAAAACTCTAAAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCACATTCGTTGAAAGGTGGAGAGGGAAGCAAGAATGGATCCTCCAATCCAAACTGAATATTTTCTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG]




>consensus_4852#0
TTTTTTGAATTTTTTTAGTTTTTTTGTTTGGTTTTTTCTAAGCTTTTGAAAAAAACTTAA
AAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCAC
ATTTGTTGAAAGGTGGAGAGGGAAGCAAGAATGGATCCTCCAATCCAAACTGAATATTTT
CTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG

consensusID : consensus_4852#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [TTTTTAAGTTTTATAACACACTTTATTTATACTTTTCTATAAAATTTTTTAAAAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCACATTTGTTGAAAAGTGGAAAGAGAAGCAAGAATTGATCCTCCAATCCAAACAGAGTATTTTCTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG]

[-] EMBL AU165195             [TTTTTAAGTTTTATAACACACTTTATTTATACTTTTCTATAAAATTTTTTAAAAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCACATTTGTTGAAAAGTGGAAAGAGAAGCAAGAATTGATCCTCCAATCCAAACAGAGTATTTTCTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG]




>consensus_4852#1
TTTTTAAGTTTTATAACACACTTTATTTATACTTTTCTATAAAATTTTTTAAAAGCATTT
TCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCACATTTGTTG
AAAAGTGGAAAGAGAAGCAAGAATTGATCCTCCAATCCAAACAGAGTATTTTCTTTCAGG
TGGAGCAATGATTTTGATTCTCATTGTTGATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4852#0      TTTTTTGAATTTTTTTAGTTTTTTTGTTTGGTTTTTTCTAAGCTTTTGAAAAAAACTTAA 60
consensus_4852#1      -TTTTTAAGTTTTATAACACACTTTATTTATACTTTTCTAT-------AAAATTTTTTAA 52
                       ***** * **** * *     *** ***    *******        ****    ****

consensus_4852#0      AAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCAC 120
consensus_4852#1      AAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCAC 112
                      ************************************************************

consensus_4852#0      ATTTGTTGAAAGGTGGAGAGGGAAGCAAGAATGGATCCTCCAATCCAAACTGAATATTTT 180
consensus_4852#1      ATTTGTTGAAAAGTGGAAAGAGAAGCAAGAATTGATCCTCCAATCCAAACAGAGTATTTT 172
                      *********** ***** ** *********** ***************** ** ******

consensus_4852#0      CTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG 221
consensus_4852#1      CTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG 213
                      *****************************************