These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 979 fasta sequence [CACATCTCTATATCCACGCGTTTACAGATTGCTCACCAGTCTGCTGAAGCATTGGCCTACCTTCACTCATGGGCATCGCCTCCAATCCTCCACGGGGACGTCAAGTCATCCAACATTCTCCTTGATGGTGACTTCACAGCGAAGGTCTCTGACTTTGGAGCCTCCATCTTATCGCCAACCGATGATGCACAGTTCGTCACGTTTGTGCAGGGAACTCGTGGGTACCTTGACCCAGAGTACATGCAAACATGGAAATTAACGGATAAGAGTGATGTATACAGTTTTGGGGTTGTTGTCCTAGAGCTACTCACGAGAAAGAAACCATTAAATTTTGACGGGCTAGAGGATGAGAAAAGCCTATCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGGAAATCTTGGATGATCAAATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGCTTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGCTTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTGCTAGGAGAGTCATCAATTGTTAGCTCGGAGGTTGTCAGTACGGGAAATTTCAGCATTGAGAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCGCTAATAACCTTGTTGTATATCATATCCCAGGAAATTATATAGGTATACTCCAAAAGTATTACATGTATAGGTAATCGTCATCATATATGGAATGATTCATACATGTTTTATATGTGTAGCTCAAGGTTGCATCATTGTTAAGATCCAAAGGTGAGGTTGTTGTTTCAATTGCTATTGTAGCTTTACCTTTCAAAAATCTATGTACAATAGTAATTGATTTGATATTTGACACACATTTTCTTTTTATAGTTTGATCAATTCTCATACTGCTAACAAATCA] [+] EMBL AK060211 [CACATCTCTATATCCACGCGTTTACAGATTGCTCACCAGTCTGCTGAAGCATTGGCCTACCTTCACTCATGGGCATCGCCTCCAATCCTCCACGGGGACGTCAAGTCATCCAACATTCTCCTTGATGGTGACTTCACAGCGAAGGTCTCTGACTTTGGAGCCTCCATCTTATCGCCAACCGATGATGCACAGTTCGTCACGTTTGTGCAGGGAACTCGTGGGTACCTTGACCCAGAGTACATGCAAACATGGAAATTAACGGATAAGAGTGATGTATACAGTTTTGGGGTTGTTGTCCTAGAGCTACTCACGAGAAAGAAACCATTAAATTTTGACGGGCTAGAGGATGAGAAAAGCCTATCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGGAAATCTTGGATGATCAAATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGCTTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGCTTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTGCTAGGAGAGTCATCAATTGTTAGCTCGGAGGTTGTCAGTACGGGAAATTTCAGCATTGAGAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCGCTAATAACCTTGTTGTATATCATATCCCAGGAAATTATATAGGTATACTCCAAAAGTATTACATGTATAGGTAATCGTCATCATATATGGAATGATTCATACATGTTTTATATGTGTAGCTCAAGGTTGCATCATTGTTAAGATCCAAAGGTGAGG ] [-] EMBL CF307505 [ AAACCATTAAATTTTGACGGGCTAGAGGATGAGAAAAGCCTATCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGGAAATCTTGGATGATCAAATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGCTTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGCTTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTACTAGGAGAGTCATCAATTGTTAGCTTGGAGGTTGTCAGTACGGGAAATTTCAGCATTGAGAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCGCTAATAACCTTGTTGTATATCATATCCCAGGAAATTATATAGGTATACTCCAAAAGTATTACATGTATAGGTAATCGTCATCATATATGGAATGATTCATACATGTTTTATATGTGTAGCTCAAGGTTGCATCATTGTTAAGATCCAAAGGTGAGGTTGTTGTTTCAATTGCTATTGTAGCTTTACCTTTCAAAAATCTATGTACAATAGTAATTGATTTGATATTTGACACACATTTTCTTTTTATAGTTTGATCAATTCTCATACTGCTAACAAATCA] consensusID : consensus_4858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [GGGCTAGAGGATGAGAAAAGCCTATCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGAAAATCTTGGATGATCAAATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGCTTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGCTTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTACTAGGAGAGTCATCAATTGTTAGCTCGGAGGTTGTCAGTACGGGGAAATTTCAGCATTGAGAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCACTAATAACCTTGGTGNATATCATATCCCAGGAAATTATATAGGTATACTCCAAAAGTATATGGGAATGATTCATACATGNTTTATATGTGTAGCTCAAGGNTGCATCATTGGTNAGATCCAAAGGNGANGGTTGGTGNTTCAATTGCTNTTGNAGCTTTACCTTTCAAAAATCTATGTNCCATAGTAATTG] [+] EMBL CA765520 [GGGCTAGAGGATGAGAAAAGCCTATCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGAAAATCTTGGATGATCAAATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGCTTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGCTTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTACTAGGAGAGTCATCAATTGTTAGCTCGGAGGTTGTCAGTACGGGGAAATTTCAGCATTGAGAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCACTAATAACCTTGGTGNATATCATATCCCAGGAAATTATATAGGTATACTCCAAAAGTATATGGGAATGATTCATACATGNTTTATATGTGTAGCTCAAGGNTGCATCATTGGTNAGATCCAAAGGNGANGGTTGGTGNTTCAATTGCTNTTGNAGCTTTACCTTTCAAAAATCTATGTNCCATAGTAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4858#0 CACATCTCTATATCCACGCGTTTACAGATTGCTCACCAGTCTGCTGAAGCATTGGCCTAC 60 consensus_4858#1 ------------------------------------------------------------ consensus_4858#0 CTTCACTCATGGGCATCGCCTCCAATCCTCCACGGGGACGTCAAGTCATCCAACATTCTC 120 consensus_4858#1 ------------------------------------------------------------ consensus_4858#0 CTTGATGGTGACTTCACAGCGAAGGTCTCTGACTTTGGAGCCTCCATCTTATCGCCAACC 180 consensus_4858#1 ------------------------------------------------------------ consensus_4858#0 GATGATGCACAGTTCGTCACGTTTGTGCAGGGAACTCGTGGGTACCTTGACCCAGAGTAC 240 consensus_4858#1 ------------------------------------------------------------ consensus_4858#0 ATGCAAACATGGAAATTAACGGATAAGAGTGATGTATACAGTTTTGGGGTTGTTGTCCTA 300 consensus_4858#1 ------------------------------------------------------------ consensus_4858#0 GAGCTACTCACGAGAAAGAAACCATTAAATTTTGACGGGCTAGAGGATGAGAAAAGCCTA 360 consensus_4858#1 ------------------------------------GGGCTAGAGGATGAGAAAAGCCTA 24 ************************ consensus_4858#0 TCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGGAAATCTTGGATGATCAA 420 consensus_4858#1 TCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGAAAATCTTGGATGATCAA 84 ****************************************** ***************** consensus_4858#0 ATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGC 480 consensus_4858#1 ATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGC 144 ************************************************************ consensus_4858#0 TTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGC 540 consensus_4858#1 TTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGC 204 ************************************************************ consensus_4858#0 TTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTG 600 consensus_4858#1 TTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTA 264 *********************************************************** consensus_4858#0 CTAGGAGAGTCATCAATTGTTAGCTCGGAGGTTGTCAGTACGGG-AAATTTCAGCATTGA 659 consensus_4858#1 CTAGGAGAGTCATCAATTGTTAGCTCGGAGGTTGTCAGTACGGGGAAATTTCAGCATTGA 324 ******************************************** *************** consensus_4858#0 GAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCGCTAATAACCTTGTTGTATAT 719 consensus_4858#1 GAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCACTAATAACCTTGGTGNATAT 384 *************************************** ************ ** **** consensus_4858#0 CATATCCCAGGAAATTATATAGGTATACTCCAAAAGTATTACATGTATAGGTAATCGTCA 779 consensus_4858#1 CATATCCCAGGAAATTATATAGGTATACTCCAAAAGTAT---ATG--------------- 426 *************************************** *** consensus_4858#0 TCATATATGGAATGATTCATACATGTTTTATATGTGTAGCTCAAGGTTGCATCATTGTTA 839 consensus_4858#1 --------GGAATGATTCATACATGNTTTATATGTGTAGCTCAAGGNTGCATCATTGGTN 478 ***************** ******************** ********** * consensus_4858#0 AGATCCAAAGGTGAGG-TTGTTGTTTCAATTGCTATTGTAGCTTTACCTTTCAAAAATCT 898 consensus_4858#1 AGATCCAAAGGNGANGGTTGGTGNTTCAATTGCTNTTGNAGCTTTACCTTTCAAAAATCT 538 *********** ** * *** ** ********** *** ********************* consensus_4858#0 ATGTACAATAGTAATTGATTTGATATTTGACACACATTTTCTTTTTATAGTTTGATCAAT 958 consensus_4858#1 ATGTNCCATAGTAATTG------------------------------------------- 555 **** * ********** consensus_4858#0 TCTCATACTGCTAACAAATCA 979 consensus_4858#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||