These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1433 fasta sequence [CTACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGACCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCCAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGCCAAGAAGGTGGAGTTCGCCGGTGGAAAAGACGACGGCGACAACGACATCAACTGGCAAGATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTTTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGGTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCCCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGAAGAGTAACACTTGGGTGAAAGAATATGAGATCAGTCTAAAGGAGTTGTGGAATCAACAAGAATTTTGTAATGCAAACCTGCCGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCATGCAGTTTGGCGCCAGTCGTCGGTGGCTCTGATTTCATAAGTTACCTCCCTCATGATACTCTTTATGACAGAGATGTGCTAAGCTCAGTTGTATCCCAAAGTATGTCAGGCTGTTATCAGTTCGGCCCTGCAACTGGTTTGGTATGAAGGGACTGCAATCTGGAGGTGGATTGGGACTGTTGGGCAACTGTAGCAATTTGGAAGGGAGGCTGCTGGTGACCATTTTGAAAGGGAAATTTTGAAAGGGAAGCTAATAGTAGTTGACACACATCTTGGTCTTTTATGTGGGAACACTTTGTTAGCTGTTACACTTGTTCTATCATCTGTTCTTAGTACTGATATGTTAATTTATGGCGCTGGCCGTCAGCCGGTTGTGGTATGTTAATCTATAGAACATAATAATCCTACCTA] [+] EMBL AK106804 [CTACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGACCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCCAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGCCAAGAAGGTGGAGTTCGCCGGTGGAAAAGACGACGGCGACAACGACATCAACTGGCAAGATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTTTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGGTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCCCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGAAGAGTAACACTTGGGTGAAAGAATATGAGATCAGTCTAAAGGAGTTGTGGAATCAACAAGAATTTTGTAATGCAAACCTGCCGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCATGCAGTTTGGCGCCAGTCGTCGGTGGCTCTGATTTCATAAGTTACCTCCCTCATGATACTCTTTATGACAGAGATGTGCTAAGCTCAGTTGTATCCCAAAGTATGTCAGGCTGTTATCAGTTCGGCCCTGCAACTGGTTTGGTATGAAGGGACTGCAATCTGGAGGTGGATTGGGACTGTTGGGCAACTGTAGCAATTTGGAAGGGAGGCTGCTGGTGACCATTTTGAAAGGGAAATTTTGAAAGGGAAGCTAATAGTAGTTGACACACATCTTGGTCTTTTATGTGGGAACACTTTGTTAGCTGTTACACTTGTTCTATCATCTGTTCTTAGTACTGATATGTTAATTTATGGCGCTGGCCGTCAGCCGGTTGTGGTATGTTAATCTATAGAACATAATAATCCTACCTA] consensusID : consensus_4863#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 940 fasta sequence [TACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGACCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCCAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGCCAAGAAGGTGGAGTTCGCCGGTGGAGAAGACGACGGCGACAACGACATCAACTGGCAAGATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTTTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGGTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCCCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGCCGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCA] [-] EMBL AK105547 [TACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGACCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCCAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGCCAAGAAGGTGGAGTTCGCCGGTGGAGAAGACGACGGCGACAACGACATCAACTGGCAAGATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTTTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGGTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCCCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGCCGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCA] [+] EMBL AA750163 [ CATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCAT CGCGNSGCCACCCCGGCTAT ATGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4863#0 CTACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTG 60 consensus_4863#1 -TACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTG 59 *********************************************************** consensus_4863#0 CTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGA 120 consensus_4863#1 CTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGA 119 ************************************************************ consensus_4863#0 CCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGC 180 consensus_4863#1 CCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGC 179 ************************************************************ consensus_4863#0 CAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAG 240 consensus_4863#1 CAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAG 239 ************************************************************ consensus_4863#0 ACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGG 300 consensus_4863#1 ACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGG 299 ************************************************************ consensus_4863#0 CCAAGAAGGTGGAGTTCGCCGGTGGAAAAGACGACGGCGACAACGACATCAACTGGCAAG 360 consensus_4863#1 CCAAGAAGGTGGAGTTCGCCGGTGGAGAAGACGACGGCGACAACGACATCAACTGGCAAG 359 ************************** ********************************* consensus_4863#0 ATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCA 420 consensus_4863#1 ATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCA 419 ************************************************************ consensus_4863#0 ACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGT 480 consensus_4863#1 ACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGT 479 ************************************************************ consensus_4863#0 TTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATG 540 consensus_4863#1 TTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATG 539 ************************************************************ consensus_4863#0 ACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGAT 600 consensus_4863#1 ACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGAT 599 ************************************************************ consensus_4863#0 ATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGG 660 consensus_4863#1 ATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGG 659 ************************************************************ consensus_4863#0 GTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATC 720 consensus_4863#1 GTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATC 719 ************************************************************ consensus_4863#0 CCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGAAGAGTAACACTTGGGTGAAAG 780 consensus_4863#1 CCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTG---------------------- 757 ************************************** consensus_4863#0 AATATGAGATCAGTCTAAAGGAGTTGTGGAATCAACAAGAATTTTGTAATGCAAACCTGC 840 consensus_4863#1 -----------------------------------------------------------C 758 * consensus_4863#0 CGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACT 900 consensus_4863#1 CGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACT 818 ************************************************************ consensus_4863#0 TCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACT 960 consensus_4863#1 TCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACT 878 ************************************************************ consensus_4863#0 ACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTG 1020 consensus_4863#1 ACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTG 938 ************************************************************ consensus_4863#0 CATGCAGTTTGGCGCCAGTCGTCGGTGGCTCTGATTTCATAAGTTACCTCCCTCATGATA 1080 consensus_4863#1 CA---------------------------------------------------------- 940 ** consensus_4863#0 CTCTTTATGACAGAGATGTGCTAAGCTCAGTTGTATCCCAAAGTATGTCAGGCTGTTATC 1140 consensus_4863#1 ------------------------------------------------------------ consensus_4863#0 AGTTCGGCCCTGCAACTGGTTTGGTATGAAGGGACTGCAATCTGGAGGTGGATTGGGACT 1200 consensus_4863#1 ------------------------------------------------------------ consensus_4863#0 GTTGGGCAACTGTAGCAATTTGGAAGGGAGGCTGCTGGTGACCATTTTGAAAGGGAAATT 1260 consensus_4863#1 ------------------------------------------------------------ consensus_4863#0 TTGAAAGGGAAGCTAATAGTAGTTGACACACATCTTGGTCTTTTATGTGGGAACACTTTG 1320 consensus_4863#1 ------------------------------------------------------------ consensus_4863#0 TTAGCTGTTACACTTGTTCTATCATCTGTTCTTAGTACTGATATGTTAATTTATGGCGCT 1380 consensus_4863#1 ------------------------------------------------------------ consensus_4863#0 GGCCGTCAGCCGGTTGTGGTATGTTAATCTATAGAACATAATAATCCTACCTA 1433 consensus_4863#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||