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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1241 fasta sequence
[TCAGTCTCTACTCCTAGCTCGAGCTCCAATCTCTTGCTCACTCTCTGCTCAGTTGTTCAGAGCTGCGTGGCTAGTGGGGAAGTGGCAGTAATGCCACAGGTTGACCTGGAGAGCTTGGTGTGCGGCGTGGCGGGCGCCGGAGCGGGCGACAGGAAGGTGTCGTGCGAGACGGTCATCGCGGCGGGGGAGAGCGGGGACGCGTCGCCGCCGCGGATGCCGCCGCCGCCGCCGCCGCCGGACCCCGACTTCCCGCCGGAGTCGATAACCATCCCCATCGGCGACGAGGTGGCCTTCTCGGAGCTGAACCCGATATACGACCGGGACGACTCCACCAAGGGAAGCACCAACCCCAAGTCGGCGGCCGGCGCCTCCTCCAACCCCATCCCGGCCAAGTCGCGCTCCAACTCCACGCGCATCGCGGGCGCCCCCGCCGCCGCCACCACGTTCTTCGGCCTCCCCGCGAGCATCCGCCCGGCGTTCACCCGGCGCCGCCCGTCGCAGGGCCGGAGATGGTGGCGCGGGTTGGTGGCCGTGCTCCTCTGCGGCGGCGGCTGCTCTTGCCAAGGAGGAGGACGACGACACGCCAGGAAGAAGGTGGCGTTGGATGAAGACCACCACGACGGGGACGACGACAAGCAGGCCGGCATCGCGGCAATGCGGAGGTTCAAGTCCGGGAGACGAACCGCCTCATGGGTAGAGGAGGCAATAGCGGCGGCGGAGGCCGCCGGCGAGGAGGAGCAGCAGCAGGAGAACGACGCCGCCGCCGACGACGACGAGAAGAAGCAGGAGGTCGAGCGCTACGAGCCTACGACACTGAACAGTGGGCCCCACGACAGGTAAGTAGGTTGCAGCAGAGGCGGGAGAAGCAGTGGTAGATGCTGGTTGGATTTGGATACGATGGTGGGGCCCCGCTGTAAGTGACCCTGCGTAGGTTCGGGCGCGATCGCCGATAGGTGAGGTGAAGCCAAAGCCGTGTCGAGTTGTATCCATCAGATTCAGCGACGAGCCGACGAGGGATGGGCGCGGGATCATGCATGCCGCGATGGTGATTGGTGAATCGCCTCGAAATGGGAGTCTTGAAATTTACCGGTGGTGTTTTTTGCTGTTTTGGAGTTTTGCACTTGGGGATCGGGAGTGTTTGCGTGCTGTGGCCAATGATCGCCGTTGTACTGTACATAACCCAGGAAATGAATAACTGGAAGCGCACAATGCGCTGTTCCAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK069754 [TCAGTCTCTACTCCTAGCTCGAGCTCCAATCTCTTGCTCACTCTCTGCTCAGTTGTTCAGAGCTGCGTGGCTAGTGGGGAAGTGGCAGTAATGCCACAGGTTGACCTGGAGAGCTTGGTGTGCGGCGTGGCGGGCGCCGGAGCGGGCGACAGGAAGGTGTCGTGCGAGACGGTCATCGCGGCGGGGGAGAGCGGGGACGCGTCGCCGCCGCGGATGCCGCCGCCGCCGCCGCCGCCGGACCCCGACTTCCCGCCGGAGTCGATAACCATCCCCATCGGCGACGAGGTGGCCTTCTCGGAGCTGAACCCGATATACGACCGGGACGACTCCACCAAGGGAAGCACCAACCCCAAGTCGGCGGCCGGCGCCTCCTCCAACCCCATCCCGGCCAAGTCGCGCTCCAACTCCACGCGCATCGCGGGCGCCCCCGCCGCCGCCACCACGTTCTTCGGCCTCCCCGCGAGCATCCGCCCGGCGTTCACCCGGCGCCGCCCGTCGCAGGGCCGGAGATGGTGGCGCGGGTTGGTGGCCGTGCTCCTCTGCGGCGGCGGCTGCTCTTGCCAAGGAGGAGGACGACGACACGCCAGGAAGAAGGTGGCGTTGGATGAAGACCACCACGACGGGGACGACGACAAGCAGGCCGGCATCGCGGCAATGCGGAGGTTCAAGTCCGGGAGACGAACCGCCTCATGGGTAGAGGAGGCAATAGCGGCGGCGGAGGCCGCCGGCGAGGAGGAGCAGCAGCAGGAGAACGACGCCGCCGCCGACGACGACGAGAAGAAGCAGGAGGTCGAGCGCTACGAGCCTACGACACTGAACAGTGGGCCCCACGACAGGTAAGTAGGTTGCAGCAGAGGCGGGAGAAGCAGTGGTAGATGCTGGTTGGATTTGGATACGATGGTGGGGCCCCGCTGTAAGTGACCCTGCGTAGGTTCGGGCGCGATCGCCGATAGGTGAGGTGAAGCCAAAGCCGTGTCGAGTTGTATCCATCAGATTCAGCGACGAGCCGACGAGGGATGGGCGCGGGATCATGCATGCCGCGATGGTGATTGGTGAATCGCCTCGAAATGGGAGTCTTGAAATTTACCGGTGGTGTTTTTTGCTGTTTTGGAGTTTTGCACTTGGGGATCGGGAGTGTTTGCGTGCTGTGGCCAATGATCGCCGTTGTACTGTACATAACCCAGGAAATGAATAACTGGAAGCGCACAATGCG ]
[+] EMBL AU029713 [ nCCCTNCGTAGGTTCGGGCGCGATCGCCGATAGGTGAGGTGAAGCCAAAGCCGTGTCGAGTTGTATCCATCAGATTCAGCGACGAGCCGACGAGGGATGGGCGCGGGATCATGCATGCCGCGATGGTGATTGGTGAATCGCCTCGAAATGGGAGTCTTGAAATTTACCGGTGGTGTTTTTTGCTGTTTTGGAGTTTTGCACTTGGGGATCGGGAGTGTTTGCGTGCTGTGGCCAATGATCGCCGTTGTACTGTACATAACCCAGGAAATGAATAACTGGAAGCGCACAATGCGCTGTTCCAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_4871#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence
[GCAGCCTCAGCTCCATCTACTCCTCTCATGAATTTTTAAGTTGTTCAGAGCTGCGTGGCTAGTGGGGAAGTGGCAGTTATGCACAGGTTGACCTGGAGAGCTTGGTGTGCGGCGTGGCGGGCGCCGGAGCGGGCGACAGGAAGGTGTCGTGCGANANGGTCATCGCGGCGGGGGAGANCGGGGACNGTTCGCCGCCGCGGATNCCGCCGCCGCCGCCGCCGCCGGACCCCGACTTCCCGCCGGAGTNGATAACCATCCCCATCGGCGACGAAGTGGCCTTCTCGGAGCTGAACCCGATATACGACCGGGAAGACTTCACCAAGGGAAGCACCAACCCCAAGTN]
[+] EMBL AU094754 [GCAGCCTCAGCTCCATCTACTCCTCTCATGAATTTTTAAGTTGTTCAGAGCTGCGTGGCTAGTGGGGAAGTGGCAGTTATGCACAGGTTGACCTGGAGAGCTTGGTGTGCGGCGTGGCGGGCGCCGGAGCGGGCGACAGGAAGGTGTCGTGCGANANGGTCATCGCGGCGGGGGAGANCGGGGACNGTTCGCCGCCGCGGATNCCGCCGCCGCCGCCGCCGCCGGACCCCGACTTCCCGCCGGAGTNGATAACCATCCCCATCGGCGACGAAGTGGCCTTCTCGGAGCTGAACCCGATATACGACCGGGAAGACTTCACCAAGGGAAGCACCAACCCCAAGTN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4871#0 TCAGTCTCTACTCCTAGCTCGAGCTCCAATCTCTTG-CTCACTCTCTGCTCAGTTGTTCA 59
consensus_4871#1 -------------GCAGCCTCAGCTCCATCTACTCCTCTCATGAATTTTTAAGTTGTTCA 47
*** ******* ** **** * * *********
consensus_4871#0 GAGCTGCGTGGCTAGTGGGGAAGTGGCAGTAATGCCACAGGTTGACCTGGAGAGCTTGGT 119
consensus_4871#1 GAGCTGCGTGGCTAGTGGGGAAGTGGCAGTTATGC-ACAGGTTGACCTGGAGAGCTTGGT 106
****************************** **** ************************
consensus_4871#0 GTGCGGCGTGGCGGGCGCCGGAGCGGGCGACAGGAAGGTGTCGTGCGAGACGGTCATCGC 179
consensus_4871#1 GTGCGGCGTGGCGGGCGCCGGAGCGGGCGACAGGAAGGTGTCGTGCGANANGGTCATCGC 166
************************************************ * *********
consensus_4871#0 GGCGGGGGAGAGCGGGGACGCGTCGCCGCCGCGGATGCCGCCGCCGCCGCCGCCGCCGGA 239
consensus_4871#1 GGCGGGGGAGANCGGGGACNGTTCGCCGCCGCGGATNCCGCCGCCGCCGCCGCCGCCGGA 226
*********** ******* ************** ***********************
consensus_4871#0 CCCCGACTTCCCGCCGGAGTCGATAACCATCCCCATCGGCGACGAGGTGGCCTTCTCGGA 299
consensus_4871#1 CCCCGACTTCCCGCCGGAGTNGATAACCATCCCCATCGGCGACGAAGTGGCCTTCTCGGA 286
******************** ************************ **************
consensus_4871#0 GCTGAACCCGATATACGACCGGGACGACTCCACCAAGGGAAGCACCAACCCCAAGTCGGC 359
consensus_4871#1 GCTGAACCCGATATACGACCGGGAAGACTTCACCAAGGGAAGCACCAACCCCAAGTN--- 343
************************ **** **************************
consensus_4871#0 GGCCGGCGCCTCCTCCAACCCCATCCCGGCCAAGTCGCGCTCCAACTCCACGCGCATCGC 419
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 GGGCGCCCCCGCCGCCGCCACCACGTTCTTCGGCCTCCCCGCGAGCATCCGCCCGGCGTT 479
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 CACCCGGCGCCGCCCGTCGCAGGGCCGGAGATGGTGGCGCGGGTTGGTGGCCGTGCTCCT 539
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 CTGCGGCGGCGGCTGCTCTTGCCAAGGAGGAGGACGACGACACGCCAGGAAGAAGGTGGC 599
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 GTTGGATGAAGACCACCACGACGGGGACGACGACAAGCAGGCCGGCATCGCGGCAATGCG 659
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 GAGGTTCAAGTCCGGGAGACGAACCGCCTCATGGGTAGAGGAGGCAATAGCGGCGGCGGA 719
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 GGCCGCCGGCGAGGAGGAGCAGCAGCAGGAGAACGACGCCGCCGCCGACGACGACGAGAA 779
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 GAAGCAGGAGGTCGAGCGCTACGAGCCTACGACACTGAACAGTGGGCCCCACGACAGGTA 839
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 AGTAGGTTGCAGCAGAGGCGGGAGAAGCAGTGGTAGATGCTGGTTGGATTTGGATACGAT 899
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 GGTGGGGCCCCGCTGTAAGTGACCCTGCGTAGGTTCGGGCGCGATCGCCGATAGGTGAGG 959
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 TGAAGCCAAAGCCGTGTCGAGTTGTATCCATCAGATTCAGCGACGAGCCGACGAGGGATG 1019
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 GGCGCGGGATCATGCATGCCGCGATGGTGATTGGTGAATCGCCTCGAAATGGGAGTCTTG 1079
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 AAATTTACCGGTGGTGTTTTTTGCTGTTTTGGAGTTTTGCACTTGGGGATCGGGAGTGTT 1139
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 TGCGTGCTGTGGCCAATGATCGCCGTTGTACTGTACATAACCCAGGAAATGAATAACTGG 1199
consensus_4871#1 ------------------------------------------------------------
consensus_4871#0 AAGCGCACAATGCGCTGTTCCAAAAAAAAAAAAAAAAAAAAA 1241
consensus_4871#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||