cluster # 4872

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Oryza sativa
cluster # 4872 cluster # 4872 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4872#0 length = 402 sequences # 1

consensus_4872#1 length = 392 sequences # 2

consensusID : consensus_4872#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [AAGCTACAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACAGAAGATAAGGAGCAGATGCACGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCGCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGTCTTACAGNTTGTTATGGCGTAAAGCCGAGNTTTGGTTCTATTATTGATACACTGTACTGCCTGGATCATNCATACNATCCGTGGAACTGATGTGAATTTTGCATTTGATTTGCTTTGGGAGCAACAGCNCGATCTGATCNCAAACNGATCTTGGCCAACACGGCTTGCTATCAATGACAAATCATTATTTTCATGN]

[+] EMBL CB096534             [AAGCTACAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACAGAAGATAAGGAGCAGATGCACGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCGCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGTCTTACAGNTTGTTATGGCGTAAAGCCGAGNTTTGGTTCTATTATTGATACACTGTACTGCCTGGATCATNCATACNATCCGTGGAACTGATGTGAATTTTGCATTTGATTTGCTTTGGGAGCAACAGCNCGATCTGATCNCAAACNGATCTTGGCCAACACGGCTTGCTATCAATGACAAATCATTATTTTCATGN]




>consensus_4872#0
AAGCTACAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACAGAAGATAAGGAG
CAGATGCACGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGC
AAGCGCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGA
TTCCTTGTCGACAGATCAATGATGGTCTTACAGNTTGTTATGGCGTAAAGCCGAGNTTTG
GTTCTATTATTGATACACTGTACTGCCTGGATCATNCATACNATCCGTGGAACTGATGTG
AATTTTGCATTTGATTTGCTTTGGGAGCAACAGCNCGATCTGATCNCAAACNGATCTTGG
CCAACACGGCTTGCTATCAATGACAAATCATTATTTTCATGN

consensusID : consensus_4872#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 392
fasta sequence

                              [CTGAAGTTAAAGAAGCTNCAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACNGAAGATAAGGAGCAGATGCNCGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCNCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGNCTTACAGTTTGTTATGGCGTAAAGCCGAGTTTTGGTTCTATTATTTATA-CACTGTACTGCCTGGATCATCCATNCGATCCGTGGAACTGATGTGAATTTTGCATTTGATTGTTTTGGGAGCAACAGCCGATCTGATCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU175054             [CTGAAGTTAAAGAAGCTNCAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACNGAAGATAAGGAGCAGATGCNCGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCNCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGNCTTACAGTTTGTTATGGCGTAAAGCCGAGTTTTGGTTCTATTATTTATA CACTGTACTGCCTGGATCATCCATNCGATCCGTGGAACTGATGTGAATTTTGCATTTGATTGTTTTGGGAGCAACAGCCGATCTGATCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF330992             [                                                                       GCAGATGCACGCTATCTTGACGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCGCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGGTTCCTTGTCGACAGATCAATGATGGTCTTACAGTTTGTTATGGCGTAAAGCCGAGTTTTGGTTCTATTATTTATATCACTGTACTGCCTGGATCATCCATACGATCCGTGGAACTGATGTGAATTTTGCATTTGATTGTTTTGGGAGCAACAGCCGATCTGATCGCAAA                                ]




>consensus_4872#1
CTGAAGTTAAAGAAGCTNCAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACN
GAAGATAAGGAGCAGATGCNCGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTT
TCTGTTGATGGCAAGCNCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCC
CCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGNCTTACAGTTTGTTATGGCGTAA
AGCCGAGTTTTGGTTCTATTATTTATACACTGTACTGCCTGGATCATCCATNCGATCCGT
GGAACTGATGTGAATTTTGCATTTGATTGTTTTGGGAGCAACAGCCGATCTGATCGCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4872#0      ------------AAGCTACAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACA 48
consensus_4872#1      CTGAAGTTAAAGAAGCTNCAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACN 60
                                  ***** ***************************************** 

consensus_4872#0      GAAGATAAGGAGCAGATGCACGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTT 108
consensus_4872#1      GAAGATAAGGAGCAGATGCNCGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTT 120
                      ******************* ****************************************

consensus_4872#0      TCTGTTGATGGCAAGCGCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCC 168
consensus_4872#1      TCTGTTGATGGCAAGCNCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCC 180
                      **************** *******************************************

consensus_4872#0      CCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGTCTTACAGNTTGTTATGGCGTAA 228
consensus_4872#1      CCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGNCTTACAGTTTGTTATGGCGTAA 240
                      ************************************* ******* **************

consensus_4872#0      AGCCGAGNTTTGGTTCTATTATTGATACACTGTACTGCCTGGATCATNCATACNATCCGT 288
consensus_4872#1      AGCCGAGTTTTGGTTCTATTATTTATACACTGTACTGCCTGGATCATCCATNCGATCCGT 300
                      ******* *************** *********************** *** * ******

consensus_4872#0      GGAACTGATGTGAATTTTGCATTTGATTTGCTTTGGGAGCAACAGCNCGATCTGATCNCA 348
consensus_4872#1      GGAACTGATGTGAATTTTGCATTTGATT-GTTTTGGGAGCAACAGCC-GATCTGATCGCA 358
                      **************************** * ***************  ********* **

consensus_4872#0      AACNGATCTTGGCCAACACGGCTTGCTATCAATGACAAATCATTATTTTCATGN 402
consensus_4872#1      AAAAAA-----AAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------- 392
                      **   *        ** *         *  **  * ***