These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [ATCCTCTAAGCATCAATCAGAAGCAAAAGATTTCACAGGCCTGACAAGATCAAGATGTCGTCGTACGGATCAGGATTCATAACTCTGTGCCTCCCCAGCAGGGAACAACATTCTATGGATCTTATGGAGGAAATAACTCGCAATCAACAGCTTCATCGTACCACAATGGATCATCGAAAAGCACCACAGGAAGAGTGCCTGCGCAGCAATATTCAGATTACAAGTCCAAGACTGCAGACCAGTTCTCCTACTACTATAACAGCATAAGCAGCGGCCAAGGCCAGCAGCTGGGAGGTGCTGGCTACTACGACAAGCAGCCAAGCAAGGGCACGACTAAGAGGTATCCGTCACTCAAGGGCTGATCTTAACTGATTTGGCAGTGCTTGATGCATGATCGATGAAGAATAATCAACAGATTGCATATACTCATACAAGCACCGTATATACAAATAGTCATATTGAGAGAGGAAGTCTGTGTGTTGTTGTGAATCTTTCTGTAAACACATGTTTGAGAGCAGCAACTTACCTAGATATGTAGGGTTGTTTAATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTACTGATCGGTTAGTGATCAGTTGTATATTGGGAATATCAAAATAATGAACCTTA] [+] EMBL AK058799 [ATCCTCTAAGCATCAATCAGAAGCAAAAGATTTCACAGGCCTGACAAGATCAAGATGTCGTCGTACGGATCAGGATTCATAACTCTGTGCCTCCCCAGCAGGGAACAACATTCTATGGATCTTATGGAGGAAATAACTCGCAATCAACAGCTTCATCGTACCACAATGGATCATCGAAAAGCACCACAGGAAGAGTGCCTGCGCAGCAATATTCAGATTACAAGTCCAAGACTGCAGACCAGTTCTCCTACTACTATAACAGCATAAGCAGCGGCCAAGGCCAGCAGCTGGGAGGTGCTGGCTACTACGACAAGCAGCCAAGCAAGGGCACGACTAAGAGGTATCCGTCACTCAAGGGCTGATCTTAACTGATTTGGCAGTGCTTGATGCATGATCGATGAAGAATAATCAACAGATTGCATATACTCATACAAGCACCGTATATACAAATAGTCATATTGAGAGAGGAAGTCTGTGTGTTGTTGTGAATCTTTCTGTAAACACATGTTTGAGAGCAGCAACTTACCTAGATATGTAGGGTTGTTTAATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTACTGATCGGTTAGTGATCAGTTGTATATTGGGAATATCAAAATAATGAACCTTA] consensusID : consensus_4879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [GAGGTANCCGTCACTCANGGGCTGATCTTAACTGATTTGGCAGTGCTTGATGATCGATGAAGAACAACCAACAGATTGCATATACTCATACAAGCACCGTATATACACAAATAATCATATTGAGAAAGGAAGTCTGTGTGTTGTCGTGTATCTTTCTGTAAATACATGTTTGGGAGCAGCAACGAACCTAGATATGTAGGGTTGTTTAATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTCGATTTGTTCATTGGTTTATTACTGATCGGTCAGTGATCAGTTGTATATTTGGAATATCAAAACAATGAACCTTATTTTGGGTTAAAAAAAA] [+] EMBL AU085732 [GAGGTANCCGTCACTCANGGGCTGATCTTAACTGATTTGGCAGTGCTTGATGATCGATGAAGAACAACCAACAGATTGCATATACTCATACAAGCACCGTATATACACAAATAATCATATTGAGAAAGGAAGTCTGTGTGTTGTCGTGTATCTTTCTGTAAATACATGTTTGGGAGCAGCAACGAACCTAGATATGTAGGGTTGTTTAATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTCGATTTGTTCATTGGTTTATTACTGATCGGTCAGTGATCAGTTGTATATTTGGAATATCAAAACAATGAACCTTATTTTGGGTTAAAAAAAA] consensusID : consensus_4879#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [ATCGATCAGAAGCAAGGGATTTCACAGGCCTGACAAGATCAAGATGTCGTCGTACGGNTCAGGGTTTCATAACTCAGTGCCTCCCCAGCAGGGAACAACATTCTATGGNTCTTCCTATGGAGGAAATAACTCGCAATCAACGGCTTCATCGTACCACAATGGNTCATCGAAAAGCACCACAGGAAGAGTGCCTNCGCAGAATTATTCAGATTACAAGTCGATGCTGCAAGACCAGTACTCCTACTACTATANCA] [+] EMBL C97111 [ATCGATCAGAAGCAAGGGATTTCACAGGCCTGACAAGATCAAGATGTCGTCGTACGGNTCAGGGTTTCATAACTCAGTGCCTCCCCAGCAGGGAACAACATTCTATGGNTCTTCCTATGGAGGAAATAACTCGCAATCAACGGCTTCATCGTACCACAATGGNTCATCGAAAAGCACCACAGGAAGAGTGCCTNCGCAGAATTATTCAGATTACAAGTCGATGCTGCAAGACCAGTACTCCTACTACTATANCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4879#0 -----------------------------------------ATCCTCTAAGCATCAATCA 19 consensus_4879#2 ----------------------------------------------------ATCGATCA 8 consensus_4879#1 GAGGTANCCGTCACTCANGGGCTGATCTTAACTGATTTGGCAGTGCTTGATGATCGATGA 60 *** ** * consensus_4879#0 GAAGCAAA----AGATTTCACAGGCCTG-ACAAGATCAAGATGTCGTCGTACGGATCAGG 74 consensus_4879#2 GAAGCAAG----GGATTTCACAGGCCTG-ACAAGATCAAGATGTCGTCGTACGGNTCAGG 63 consensus_4879#1 AGAACAACCAACAGATTGCATATACTCATACAAGCACCGTATAT----ACACAAATAATC 116 * *** **** ** * * ***** * ** * ** * * consensus_4879#0 ATT-CATAACTCTGTGCCTCCCCAGCAGGGAACAACATTCTATGGATCTT---ATGGAGG 130 consensus_4879#2 GTTTCATAACTCAGTGCCTCCCCAGCAGGGAACAACATTCTATGGNTCTTCCTATGGAGG 123 consensus_4879#1 ATATTGAGAAAGGAAGTCTGTGTGTTGTCGTGTATCTTTCTGTAAATACATGTTTGGGAG 176 * * * ** * * * **** * * *** * consensus_4879#0 AAATAACTCGC---AATCAACAGCTTCATCGTACCACAATGGATCATCGAAAAGCACCAC 187 consensus_4879#2 AAATAACTCGC---AATCAACGGCTTCATCGTACCACAATGGNTCATCGAAAAGCACCAC 180 consensus_4879#1 CAGCAACGAACCTAGATATGTAGGGTTGTTTAATTTCTTCATGTGGTTCATTAGC-CATT 235 * *** * ** * * * * * * * * *** * consensus_4879#0 AGGAAGAGTGCCTGCGCAGCAATATTCAGATTACAAGTCCAAGACTGCAGACCAGTTCTC 247 consensus_4879#2 AGGAAGAGTGCCTNCGCAGAATTATTCAGATTACAAGTCGATGCTGCAAGACCAGTACTC 240 consensus_4879#1 AAATAAGATGTATTCGATTTGTTCATTGGTTTATTACTGATCGGTCAGTGATCAGTTGTA 295 * * ** * ** * * * *** * * * ** **** * consensus_4879#0 CTACTACTATAACAGCATAAGCAGCGGCCAAGGCCAGCAGCTGGGAGGTGCTGGCTACTA 307 consensus_4879#2 CTACTACTATANCA---------------------------------------------- 254 consensus_4879#1 TATTTGGAATATCAAAACAATGAACCTTATTTTGGGTTAAAAAAAA-------------- 341 * *** ** consensus_4879#0 CGACAAGCAGCCAAGCAAGGGCACGACTAAGAGGTATCCGTCACTCAAGGGCTGATCTTA 367 consensus_4879#2 ------------------------------------------------------------ consensus_4879#1 ------------------------------------------------------------ consensus_4879#0 ACTGATTTGGCAGTGCTTGATGCATGATCGATGAAGAATAATCAACAGATTGCATATACT 427 consensus_4879#2 ------------------------------------------------------------ consensus_4879#1 ------------------------------------------------------------ consensus_4879#0 CATACAAGCACCGTATATACAAATAGTCATATTGAGAGAGGAAGTCTGTGTGTTGTTGTG 487 consensus_4879#2 ------------------------------------------------------------ consensus_4879#1 ------------------------------------------------------------ consensus_4879#0 AATCTTTCTGTAAACACATGTTTGAGAGCAGCAACTTACCTAGATATGTAGGGTTGTTTA 547 consensus_4879#2 ------------------------------------------------------------ consensus_4879#1 ------------------------------------------------------------ consensus_4879#0 ATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTACTGATCGGTTAGTGATCA 607 consensus_4879#2 ------------------------------------------------------------ consensus_4879#1 ------------------------------------------------------------ consensus_4879#0 GTTGTATATTGGGAATATCAAAATAATGAACCTTA 642 consensus_4879#2 ----------------------------------- consensus_4879#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||