These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 731 fasta sequence [CGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCACCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCGTGCTACTGTACGCGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGCGGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACGGCACCGCGGACGTCGCGTTCCGCGCGCCGCAGAGTAGCAGCGGCGGGTGGGTGGCGTGGGGCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCGTGTTCATCGCCTCGCAGATCAACGCCACCGGCGCCGGCGCCGGCGGCGTGTCCGTCGTCACGACGGTGCTGGAGAGCTTCAGCCCCAGCCTGAGGAACGGGACCCTCAGGTTCGACGTGCCGGCGCCGCCCGCCGCCGAGTACTCGGCCGGCGCGTACACCATCTACGCGACGGTGGCGCTGCCGGGGAACTCGACGACGCAGAACATGGTGTGGCAGGCCGGGCCGGTCAGGGGAGGGGCCATAGCGATGCACCCGACGACGGGGGCGAACCTGAGGAGCACCAAGAAGCACGACTTCACGTCTTGATGCGTAGTAGGCTTAGGAATAAGCATTATTATTATCATTGCCATACCATACAGCATATGTTTCTGATGTTGTTTGCTATCGGTTTTTATACTAAATAAAAGTGCAA] [+] EMBL AK062839 [CGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCACCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCGTGCTACTGTACGCGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGCGGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACGGCACCGCGGACGTCGCGTTCCGCGCGCCGCAGAGTAGCAGCGGCGGGTGGGTGGCGTGGGGCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCGTGTTCATCGCCTCGCAGATCAACGCCACCGGCGCCGGCGCCGGCGGCGTGTCCGTCGTCACGACGGTGCTGGAGAGCTTCAGCCCCAGCCTGAGGAACGGGACCCTCAGGTTCGACGTGCCGGCGCCGCCCGCCGCCGAGTACTCGGCCGGCGCGTACACCATCTACGCGACGGTGGCGCTGCCGGGGAACTCGACGACGCAGAACATGGTGTGGCAGGCCGGGCCGGTCAGGGGAGGGGCCATAGCGATGCACCCGACGACGGGGGCGAACCTGAGGAGCACCAAGAAGCACGACTTCACGTCTTGATGCGTAGTAGGCTTAGGAATAAGCATTATTATTATCATTGCCATACCATACAGCATATGTTTCTGATGTTGTTTGCTATCGGTTTTTATACTAAATAAAAGTGCAA] [+] EMBL CA754535 [ CCTACCGCGTGCTAGCTACTCGTCCACCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCGTGCTACTGTACGCGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGCGGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACGGCACCGCGGACGTCGCGTTCCGCGCGCCGCAGAGTAGCAGCGGCGGGTGGGTGGCGTGGGGCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCGTGTTCATCGCCTCGCAGATCAACGCCACCGGCGCCGGCGCCGGCGGCGTGTCCGTCGTCACGACGGTGCTGGAGAGCTTCAGCCCCAGCCTGAGGAACGGGACCCTCAGGTTCGACGTGCCGGCGCCGCCCGCCGCCGAGTACTCGGCCGGCGCGTACACCATCTACGCGACGGTGGCGCTGCCGGGGAACTCGACGACGCAGAACATGGTGTGGCAGGCCGGGCCGGTCAGGGGAGGGGCCATAGCGATGCACCCGACGACGGGGGCGAACCTGAGGAGC CCAAGAAGCACG ] consensusID : consensus_4884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [GAAGCTCGANGTTTGGGTTGCGCCACGGNGGCGGCCGCTCTAGATTTAGNGGTATTCTCATTTCTGCAGGAATTCGGCACGAGGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCACCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCTTGCTACTGTACGCGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGCGGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACGGCACCGCGGACGTCGCGTTCCGCGCGCCGCAAAGCAGCGGCGGCGGGTGGGTGGCGTGGGGCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCCGTGTTCATCGCCTTGCAGATCAACGCCACCGGCGCCGGCGCCGGCGGGGTGTCCCGACGTACGACCGTGCTGGAGAAGCTTAATCACCACTCTGAGGAACCGGGACCCTCAAGTTTTAACGTGTCCGTAACCGCTCCGACGACCCAGAACTACGGGTCTGTGACGTAACACAAACATACGCGCACAGTGGCACCTCCCGGTGGATCTCATCCACTCCACAACATGTGATGGCCAGTCCCGGCACTTCCGCGCA] [+] EMBL BE040744 [GAAGCTCGANGTTTGGGTTGCGCCACGGNGGCGGCCGCTCTAGATTTAGNGGTATTCTCATTTCTGCAGGAATTCGGCACGAGGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCACCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCTTGCTACTGTACGCGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGCGGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACGGCACCGCGGACGTCGCGTTCCGCGCGCCGCAAAGCAGCGGCGGCGGGTGGGTGGCGTGGGGCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCCGTGTTCATCGCCTTGCAGATCAACGCCACCGGCGCCGGCGCCGGCGGGGTGTCCCGACGTACGACCGTGCTGGAGAAGCTTAATCACCACTCTGAGGAACCGGGACCCTCAAGTTTTAACGTGTCCGTAACCGCTCCGACGACCCAGAACTACGGGTCTGTGACGTAACACAAACATACGCGCACAGTGGCACCTCCCGGTGGATCTCATCCACTCCACAACATGTGATGGCCAGTCCCGGCACTTCCGCGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4884#0 ------------------------------------------------------------ consensus_4884#1 GAAGCTCGANGTTTGGGTTGCGCCACGGNGGCGGCCGCTCTAGATTTAGNGGTATTCTCA 60 consensus_4884#0 ----------------------CGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCA 38 consensus_4884#1 TTTCTGCAGGAATTCGGCACGAGGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCA 120 ************************************* consensus_4884#0 CCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCGTGCTACTGTACG 98 consensus_4884#1 CCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCTTGCTACTGTACG 180 *********************************************** ************ consensus_4884#0 CGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGC 158 consensus_4884#1 CGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGC 240 ************************************************************ consensus_4884#0 GGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACG 218 consensus_4884#1 GGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACG 300 ************************************************************ consensus_4884#0 GCACCGCGGACGTCGCGTTCCGCGCGCCGCAGAGTAGCAGCGGCGGGTGGGTGGCGTGGG 278 consensus_4884#1 GCACCGCGGACGTCGCGTTCCGCGCGCCGCAAAGCAGCGGCGGCGGGTGGGTGGCGTGGG 360 ******************************* ** *** ********************* consensus_4884#0 GCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGC-GTGTTCATCGCCTCGCAGATC 337 consensus_4884#1 GCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCCGTGTTCATCGCCTTGCAGATC 420 ************************************** ************* ******* consensus_4884#0 AACGCCACCGGCGCCGGCGCCGGCGGCGTGTCCGTCGTCACGACGGTGCTGGAGA-GCTT 396 consensus_4884#1 AACGCCACCGGCGCCGGCGCCGGCGGGGTGTCCCGACGTACGACCGTGCTGGAGAAGCTT 480 ************************** ****** ***** ********** **** consensus_4884#0 CAGCCCCAGCCTGAGGAAC-GGGACCCTCAGGTTC-GACGTGCCGGCG-CCGCCC--GCC 451 consensus_4884#1 AATCACCACTCTGAGGAACCGGGACCCTCAAGTTTTAACGTGTCCGTAACCGCTCCGACG 540 * * *** ********* ********** *** ***** * * **** * * consensus_4884#0 GCCGAGTACTC--GGCCGGCG-CGTA-CACCATC-TACGCG-ACGGTGGCGCTGCCGGG- 504 consensus_4884#1 ACCCAGAACTACGGGTCTGTGACGTAACACAAACATACGCGCACAGTGGCACCTCCCGGT 600 ** ** *** ** * * * **** *** * * ****** ** ***** * ** ** consensus_4884#0 -GAACTCGACGACGC-AGAACATGGTGTGGC-AGGCCGGGCCGGTCAGGGGAGGGGCCAT 561 consensus_4884#1 GGATCTCATCCACTCCACAACATGTGATGGCCAGTCCCGGCACTTCCGCGCA-------- 652 ** *** * ** * * ****** **** ** ** *** ** * * * consensus_4884#0 AGCGATGCACCCGACGACGGGGGCGAACCTGAGGAGCACCAAGAAGCACGACTTCACGTC 621 consensus_4884#1 ------------------------------------------------------------ consensus_4884#0 TTGATGCGTAGTAGGCTTAGGAATAAGCATTATTATTATCATTGCCATACCATACAGCAT 681 consensus_4884#1 ------------------------------------------------------------ consensus_4884#0 ATGTTTCTGATGTTGTTTGCTATCGGTTTTTATACTAAATAAAAGTGCAA 731 consensus_4884#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||