cluster # 4885

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Oryza sativa
cluster # 4885 cluster # 4885 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4885#0 length = 595 sequences # 2

consensus_4885#1 length = 403 sequences # 1

consensusID : consensus_4885#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 595
fasta sequence

                              [TTTTTTTTTTTTTTTTTAGGATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACCAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAGAAAAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGGATTTTAATAAAAGTCCTTCTTTAGGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCTATTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATTTTTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCCCTTGTCTCGT]

[+] EMBL CA761021             [TTTTTTTTTTTTTTTTTAGGATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACCAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAGAAAAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGGATTTTAATAAAAGTCCTTCTTTAGGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCTATTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATTTTTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCCCTTGTCTCGT]
[-] EMBL CA767020             [                  gtATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAGAAAAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGTATTTTAATAAAAGTCCTTCTTTAGGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCTATTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATTTTTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCC          ]




>consensus_4885#0
TTTTTTTTTTTTTTTTTAGGATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATT
CTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATAT
TTTTTTTAGACTTTGTTTTAATAATATAGAATATATACCAAGGTTTTCTATTTAAATCAA
TTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATA
TAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAG
AATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAGAA
AAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGGATTTTAATAAAAGTCCTTCTTTA
GGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCTA
TTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATTT
TTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCCCTTGTCTCGT

consensusID : consensus_4885#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [TTTTTTTTTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAATAAAAATATTAAAGTAAAATGAAGCAGCCCCCTTGTCTCGTCCTCT]

[+] EMBL CA761092             [TTTTTTTTTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAATAAAAATATTAAAGTAAAATGAAGCAGCCCCCTTGTCTCGTCCTCT]




>consensus_4885#1
TTTTTTTTTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTC
TTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATT
TTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAAT
TTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATAT
AAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGA
ATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAATAA
AAATATTAAAGTAAAATGAAGCAGCCCCCTTGTCTCGTCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4885#0      TTTTTTTTTTTTTTTTTAGGATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATT 60
consensus_4885#1      -TTTTTTTTTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATT 59
                       ************* **** ****************************************

consensus_4885#0      CTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATAT 120
consensus_4885#1      CTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATAT 119
                      ************************************************************

consensus_4885#0      TTTTTTTAGACTTTGTTTTAATAATATAGAATATATACCAAGGTTTTCTATTTAAATCAA 180
consensus_4885#1      TTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAA 179
                      ************************************** *********************

consensus_4885#0      TTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATA 240
consensus_4885#1      TTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATA 239
                      ************************************************************

consensus_4885#0      TAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAG 300
consensus_4885#1      TAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAG 299
                      ************************************************************

consensus_4885#0      AATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAG-A 359
consensus_4885#1      AATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAATA 359
                      *********************************************************  *

consensus_4885#0      AAAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGGATTTTAATAAAAGTCCTTCTTT 419
consensus_4885#1      AAAATATTAAAGTAAAATGAAGCAGCCCCCTTGTCTCGTCCTCT---------------- 403
                      ********************  **  *   ** * * *   *                  

consensus_4885#0      AGGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCT 479
consensus_4885#1      ------------------------------------------------------------
                                                                                  

consensus_4885#0      ATTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATT 539
consensus_4885#1      ------------------------------------------------------------
                                                                                  

consensus_4885#0      TTTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCCCTTGTCTCGT 595
consensus_4885#1      --------------------------------------------------------