These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence [TTTTTTTTTTTTTTTTTAGGATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACCAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAGAAAAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGGATTTTAATAAAAGTCCTTCTTTAGGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCTATTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATTTTTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCCCTTGTCTCGT] [+] EMBL CA761021 [TTTTTTTTTTTTTTTTTAGGATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACCAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAGAAAAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGGATTTTAATAAAAGTCCTTCTTTAGGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCTATTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATTTTTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCCCTTGTCTCGT] [-] EMBL CA767020 [ gtATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAGAAAAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGTATTTTAATAAAAGTCCTTCTTTAGGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCTATTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATTTTTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCC ] consensusID : consensus_4885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TTTTTTTTTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAATAAAAATATTAAAGTAAAATGAAGCAGCCCCCTTGTCTCGTCCTCT] [+] EMBL CA761092 [TTTTTTTTTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAATAAAAATATTAAAGTAAAATGAAGCAGCCCCCTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4885#0 TTTTTTTTTTTTTTTTTAGGATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATT 60 consensus_4885#1 -TTTTTTTTTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATT 59 ************* **** **************************************** consensus_4885#0 CTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATAT 120 consensus_4885#1 CTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATAT 119 ************************************************************ consensus_4885#0 TTTTTTTAGACTTTGTTTTAATAATATAGAATATATACCAAGGTTTTCTATTTAAATCAA 180 consensus_4885#1 TTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAA 179 ************************************** ********************* consensus_4885#0 TTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATA 240 consensus_4885#1 TTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATA 239 ************************************************************ consensus_4885#0 TAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAG 300 consensus_4885#1 TAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAG 299 ************************************************************ consensus_4885#0 AATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAG-A 359 consensus_4885#1 AATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAATA 359 ********************************************************* * consensus_4885#0 AAAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGGATTTTAATAAAAGTCCTTCTTT 419 consensus_4885#1 AAAATATTAAAGTAAAATGAAGCAGCCCCCTTGTCTCGTCCTCT---------------- 403 ******************** ** * ** * * * * consensus_4885#0 AGGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCT 479 consensus_4885#1 ------------------------------------------------------------ consensus_4885#0 ATTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATT 539 consensus_4885#1 ------------------------------------------------------------ consensus_4885#0 TTTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCCCTTGTCTCGT 595 consensus_4885#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||