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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4885 cluster # 4885       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4885#0 length = 595 sequences # 2  
consensus_4885#1 length = 403 sequences # 1  

consensusID : consensus_4885#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 595
fasta sequence
                              [TTTTTTTTTTTTTTTTTAGGATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACCAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAGAAAAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGGATTTTAATAAAAGTCCTTCTTTAGGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCTATTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATTTTTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCCCTTGTCTCGT]

[+] EMBL CA761021             [TTTTTTTTTTTTTTTTTAGGATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACCAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAGAAAAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGGATTTTAATAAAAGTCCTTCTTTAGGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCTATTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATTTTTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCCCTTGTCTCGT]
[-] EMBL CA767020             [                  gtATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAGAAAAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGTATTTTAATAAAAGTCCTTCTTTAGGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCTATTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATTTTTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCC          ]


>consensus_4885#0 TTTTTTTTTTTTTTTTTAGGATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATT CTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATAT TTTTTTTAGACTTTGTTTTAATAATATAGAATATATACCAAGGTTTTCTATTTAAATCAA TTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATA TAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAG AATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAGAA AAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGGATTTTAATAAAAGTCCTTCTTTA GGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCTA TTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATTT TTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCCCTTGTCTCGT



consensusID : consensus_4885#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence
                              [TTTTTTTTTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAATAAAAATATTAAAGTAAAATGAAGCAGCCCCCTTGTCTCGTCCTCT]

[+] EMBL CA761092             [TTTTTTTTTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAATAAAAATATTAAAGTAAAATGAAGCAGCCCCCTTGTCTCGTCCTCT]


>consensus_4885#1 TTTTTTTTTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTC TTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATT TTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAAT TTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATAT AAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGA ATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAATAA AAATATTAAAGTAAAATGAAGCAGCCCCCTTGTCTCGTCCTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4885#0      TTTTTTTTTTTTTTTTTAGGATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATT 60
consensus_4885#1      -TTTTTTTTTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATT 59
                       ************* **** ****************************************

consensus_4885#0      CTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATAT 120
consensus_4885#1      CTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATAT 119
                      ************************************************************

consensus_4885#0      TTTTTTTAGACTTTGTTTTAATAATATAGAATATATACCAAGGTTTTCTATTTAAATCAA 180
consensus_4885#1      TTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAA 179
                      ************************************** *********************

consensus_4885#0      TTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATA 240
consensus_4885#1      TTTATATTTCAAGTATACTCTCCATATACAGATATAAGGTATGGGGGCCTATCCCCCATA 239
                      ************************************************************

consensus_4885#0      TAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAG 300
consensus_4885#1      TAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAG 299
                      ************************************************************

consensus_4885#0      AATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAG-A 359
consensus_4885#1      AATTGAATTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAATA 359
                      *********************************************************  *

consensus_4885#0      AAAATATTAAAGTAAAATGATTCAATCTTTTTTTTTGGATTTTAATAAAAGTCCTTCTTT 419
consensus_4885#1      AAAATATTAAAGTAAAATGAAGCAGCCCCCTTGTCTCGTCCTCT---------------- 403
                      ********************  **  *   ** * * *   *                  

consensus_4885#0      AGGTAATAACTAGGTAACGAAGTTATTTCATTAACTTTTTGACTTTAACCAACAAAACCT 479
consensus_4885#1      ------------------------------------------------------------
                                                                                  

consensus_4885#0      ATTCTTATTTTTTGATTGTTTCAATGAGAAAATTTTTGAAAAATTAAGAATTCTAGTATT 539
consensus_4885#1      ------------------------------------------------------------
                                                                                  

consensus_4885#0      TTTTTATTCCTTCAGAAATAGATAAGAATTAGTTTGGTGAATCCCCCTTGTCTCGT 595
consensus_4885#1      --------------------------------------------------------
                                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)