These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4886#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 705 fasta sequence [ACTTCTGCTTCTCCGAGAAGAATGTCTACAACAGCAACACCAAAATTGATGTCTGGAACTACTTCACCATCAAAAACTCGAATTGAAGGATACATGTCCATGACACCATGGTACCCCTCAAGCAAGCAATCGTCAGCAGCTAACTCACCTCCAAGGGGACGTCCCAACCCAGGTCGCACTCCTCGTATTGATGGAAAAGAATTTTTCCGTCAGGCCAGGAGCCGCCTATCATACGAACAATTTGGAGCATTCTTAGCCAACATCAAGGAACTCAATGCTCATAAGCAATCAAGAGAGGATACTCTCAAGAAGGCTGAAGAGATCTTTGGTCCAGACAACAAAGATCTTTACCTCTCTTTCCAAGGCTTGCTGAACCGAAGCTTACCATAGAGCATATGCTTCACATTGGTCCCGCTTCTGATAATGTGAAGTTATTCGATTGGATTAACTTATTGCATCTAAAGGTGTGGCGTCCAATATGCAGCTGCAATTTTTGGGTCATATGAACCTGCATTAGGTTATGAAGTGATGGGGTCTGTCCGACATCAGGGTGTCTGTTTTATTTATGTATTTGTAAAAAATGGGTAGCAATTCATTGCCCATAGTATCCATGGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAAGCCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTA] [+] EMBL AK062366 [ACTTCTGCTTCTCCGAGAAGAATGTCTACAACAGCAACACCAAAATTGATGTCTGGAACTACTTCACCATCAAAAACTCGAATTGAAGGATACATGTCCATGACACCATGGTACCCCTCAAGCAAGCAATCGTCAGCAGCTAACTCACCTCCAAGGGGACGTCCCAACCCAGGTCGCACTCCTCGTATTGATGGAAAAGAATTTTTCCGTCAGGCCAGGAGCCGCCTATCATACGAACAATTTGGAGCATTCTTAGCCAACATCAAGGAACTCAATGCTCATAAGCAATCAAGAGAGGATACTCTCAAGAAGGCTGAAGAGATCTTTGGTCCAGACAACAAAGATCTTTACCTCTCTTTCCAAGGCTTGCTGAACCGAAGCTTACCATAGAGCATATGCTTCACATTGGTCCCGCTTCTGATAATGTGAAGTTATTCGATTGGATTAACTTATTGCATCTAAAGGTGTGGCGTCCAATATGCAGCTGCAATTTTTGGGTCATATGAACCTGCATTAGGTTATGAAGTGATGGGGTCTGTCCGACATCAGGGTGTCTGTTTTATTTATGTATTTGTAAAAAATGGGTAGCAATTCATTGCCCATAGTATCCATGGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAAGCCTCATGGCAAC ] [+] EMBL CA766950 [ ACCCAGGTCGCACTCCTCGTATTGATGGAAAAGAATTTTTCCGTCAGGCCAGGAGCCGCCTATCATACGAACAATTTGGAGCATTCTTAGCCAACATCAAGGAACTCAATGCTCATAAGCAATCAAGAGAGGATACTCTCAAGAAGGCTGAAGAGATCTTTGATCCAGACAACAAAGATCTTTACCTCTCTTTCCAAGGCTTGCTGAACCGAAGCTTACCATAGAGCATATGCTTCACATTGGTCCCGCTTCTGATAATGTGAAGTTATTCGATTGGATTAACTTATTGCATCTAAAGGTGTGGCGTCCAATATGCAGCTGCAATTTTTGGGTCATATGAACCTGCATTAGGTTATGAAGTGATGGGGTCTGTCCGACATCAGGGTGTCTGTTTTATTTATGTATTTGTAAAAAATGGGTAGCAATTCATTGCCCATAGTATCCATGGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAAGCCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTA] consensusID : consensus_4886#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [CTTCCTTTTTGGAAAAAAAAATTTTCTGGGGGGGGGCGGTTTTTAAAAAAAATTGGGTTTTTTTTTCCCAAAAAAAGATCTTTTTTTAATAATAAAAGGGGTTTTCCTAAAGGGGGAGAAATTTTTTTCCCCAACAAAAAATTTTTTCTCTTTTTCCAAGGGGTTGTGAACAAAGTTCCAAAAAGGGATTTTCCCCCGGGGGCCCCCTTTTTAAAAGGGAGATTTTCGGGGGGGAAACCTTGGCATTAAAAAGGTGGGGGCCCAAAAGGAAAGCCCATTTTTGGGGTTATTGAACCCGCCTTAGGTTTAAAAGTGATGGGGGTTTTTCCGAAATCAGGGGGTCTGTTTAATTTANGGATTTGTAAAAAATGGGTAGCAATTCATTGCCCATAGTATCCATNGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAAGCCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTAATCAAAAAAAAAAAAAAA] [-] EMBL CA761005 [CTTCCTTTTTGGAAAAAAAAATTTTCTGGGGGGGGGCGGTTTTTAAAAAAAATTGGGTTTTTTTTTCCCAAAAAAAGATCTTTTTTTAATAATAAAAGGGGTTTTCCTAAAGGGGGAGAAATTTTTTTCCCCAACAAAAAATTTTTTCTCTTTTTCCAAGGGGTTGTGAACAAAGTTCCAAAAAGGGATTTTCCCCCGGGGGCCCCCTTTTTAAAAGGGAGATTTTCGGGGGGGAAACCTTGGCATTAAAAAGGTGGGGGCCCAAAAGGAAAGCCCATTTTTGGGGTTATTGAACCCGCCTTAGGTTTAAAAGTGATGGGGGTTTTTCCGAAATCAGGGGGTCTGTTTAATTTANGGATTTGTAAAAAATGGGTAGCAATTCATTGCCCATAGTATCCATNGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAAGCCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTAATCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4886#0 ACTTCTGCTTCTCCGAGAAGAATGTCTACAACAGCAACACCAAAATTGATGTCTGGAACT 60 consensus_4886#1 ------------------------------------------------------------ consensus_4886#0 ACTTCACCATCAAAAACTCGAATTGAAGGATACATGTCCATGACACCATGGTACCCCTCA 120 consensus_4886#1 ------------------------------------------------------------ consensus_4886#0 AGCAAGCAATCGTCAGCAGCTAACTCACCTCCAAGGGGACGTCCCAACCCAGGTCGCACT 180 consensus_4886#1 ------------------------------------------------------------ consensus_4886#0 CCTCGTATTGATGGAAAAGAATTTTTCCGTCAGGCCAGGAGCCGCCTATCATACGAACAA 240 consensus_4886#1 CTTCCTTTTTGGAAAAAAAAATTT-----TCTGGGGGGGGGCGGTTTTTAA----AAAAA 51 * ** * ** **** ***** ** ** ** ** * * * * ** ** consensus_4886#0 TTTGGAGCATTCTTAGCCAACATCAAGGAACTCAATGCTCATAAGCAATCAAGAGAGGAT 300 consensus_4886#1 ATTGGGTTTTTTTTTCCCAAAA--AAAGATCTT-----TTTTTAATAAT-AAAAGGGGTT 103 **** ** ** **** * ** ** ** * * * *** ** ** ** * consensus_4886#0 ACTCTCAAGAAGGCTGAAGAGATCTTTGGTCCAGACAACAAAGATCTTTACCTCTCTTTC 360 consensus_4886#1 TTCCTAAAGGGGG----AGAAATTTTTTTCCC---CAACAAAAAATTTTTTCTCTTTTTC 156 ** *** ** *** ** *** ** ******* * *** **** **** consensus_4886#0 CAAGGCTTGCTGAACCGAAGCTTACCATAGAGCATATGCTTCACATTGGTCCCGCTTCTG 420 consensus_4886#1 CAAGGGGTTGTGAAC-AAAGTT--CCAAAAAGGGATTTTCCCCCGGGGGCCCCCTTTTTA 213 ***** * ***** *** * *** * ** * * * ** *** ** * consensus_4886#0 ATAATGTGAAGTTATTCGATTGGATTAACTTATTGCATCTAAAGGTGTGGCGTCCAATAT 480 consensus_4886#1 AAAG---GGAGATTTTCGGGGGGGAAACCTTG--GCATTAAAAAGGTGGGGGCCCAAAAG 268 * * * ** * **** ** * *** **** *** * ** * **** * consensus_4886#0 GCAGCTGCAATTTTTGGGTCATATGAACCTGCATTAGGTTATGAAGTGATGGGG-TCTGT 539 consensus_4886#1 GAAAGCCCATTTTTGGGGTTAT-TGAACCCGCCTTAGGTTTAAAAGTGATGGGGGTTTTT 327 * * ** **** **** ** ****** ** ******* *********** * * * consensus_4886#0 CCGACATCAGGGTGTCTGTTTTATTTATGTATTTGTAAAAAATGGGTAGCAATTCATTGC 599 consensus_4886#1 CCGAAATCAGGGGGTCTGTTTAATTTANGGATTTGTAAAAAATGGGTAGCAATTCATTGC 387 **** ******* ******** ***** * ****************************** consensus_4886#0 CCATAGTATCCATGGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAA 659 consensus_4886#1 CCATAGTATCCATNGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAA 447 ************* ********************************************** consensus_4886#0 GCCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTA-------------- 705 consensus_4886#1 GCCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTAATCAAAAAAAAAAA 507 ********************************************** consensus_4886#0 ---- consensus_4886#1 AAAA 511 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||