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Oryza sativa
cluster # 4903 cluster # 4903       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4903#0 length = 831 sequences # 2  
consensus_4903#1 length = 677 sequences # 1  

consensusID : consensus_4903#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 831
fasta sequence
                              [CTTTTTTTTTAGTTAAATAGAGGATTAATAATCCAAACAGTGAAACAGTTACGATGATTCACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTTGTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAGTTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCCATGGACCATCATCAGCCATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGACATCAAAGCTTAATTGTTCCTCACTGGTTTTTTGAAATATATCTTCTCTCATGCATTTCAACATTGCAACAAGCTCATACCTTACATCATCAGGCATATCTCTTGTGTCTTTGTTCAGTAACTCTCTATATGCTGCAATCATAGCGGTCTGGCAACCAACCTTCTTCGCTTCAAGATTATCACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTGCTCCTTGGCTGCTTCATGTGCATCCATAAACTTGTGGATGTCATCTTCTAGCTCAGCATTACAATCTTGAACCTTGCCTTTTCCTTTGCCTATACGCTGCGCCTTAGCTGCCTTGACTCCCATTGGACGTGGGATCTCCTCGTCATCAAGGGGGATAGCATCAGCATAATCTCGCTTCCTTTTGTTCGACTTGTCAAGCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGTGCTTCTCGGTCCTAGTGGCATTTCCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGACACCCTTCAGTCAC]

[+] EMBL CB621836             [CTTTTTTTTTAGTTAAATAGAGGATTAATAATCCAAACAGTGAAACAGTTACGATGATTCACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTTGTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAGTTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCCATGGACCATCATCAGCCATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGACATCAAAGCTTAATTGTTCCTCACTGGTTTTTTGAAATATATCTTCTCTCATGCATTTCAACATTGCAACAAGCTCATACCTTACATCATCAGGCATATCTCTTGTGTCTTTGTTCAGTAACTCTCTATATGCTGCAATCATAGCGGTCTGGCAACCAACCTTCTTCGCTTCAAGATTATCACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTGCTCCTTGGCTGCTTCATGTGCATCCATAAACTTGTGGATGTCATCTTCTAGCTCAGCATTACAATCTTGAACCTTGCCTTTTCCTTTGCCTATACGCTGCGCCTTAGCTGCCTTGACTCCCATTGGACGTGGGATCTCCTCGTCATCAAGGGGGATAGCATCAGCATAATCTCGCTTCCTTTTGTTCGACTTGTCAAGCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGTGCTTCTCGGTCCTAGTGGCATTTCCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGACACCCTTCAGTCAC]
[+] EMBL CB621835             [                       ATTAATAATCCAAACA CCCTACAGTTACGATGATTCACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTTGTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAGTTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCCATGGACCATCATCAGCCATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGACATCAAAGCTTAATTGTTCCTCACTGGTTTTTTGAAATATATCTTCTCTCATGCATTTCAACATTGCAACAAGCTCATACCTTACATCATCAGGCATATCTCTTGTGTCTTTGTTCAGTAACTCTCTATATGCTGCAATCATAGCGGTCTGGCAACCAACCTTCTTCGCTTCAAGATTATCACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTGCTCCTTGGCTGCTTCATGTGCATCCATAAACTTGTGGATGTCATCTTCTAGCTCAGCATTACAATCTTGAACCTTGCCTTTTCCTTTGCCTATACGCTGCGCCTTAGCTGCCTTGACTCCCATTGGACGTGGGATCTCCTCGTCATCAAGGGGGATAGCATCAGCATAATCTCG                                                                                                                                       ]


>consensus_4903#0 CTTTTTTTTTAGTTAAATAGAGGATTAATAATCCAAACAGTGAAACAGTTACGATGATTC ACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTT GTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAG TTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCCATGGACCATCATCAGCC ATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGAC ATCAAAGCTTAATTGTTCCTCACTGGTTTTTTGAAATATATCTTCTCTCATGCATTTCAA CATTGCAACAAGCTCATACCTTACATCATCAGGCATATCTCTTGTGTCTTTGTTCAGTAA CTCTCTATATGCTGCAATCATAGCGGTCTGGCAACCAACCTTCTTCGCTTCAAGATTATC ACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTGCTCCTTGGCTGCTTCATG TGCATCCATAAACTTGTGGATGTCATCTTCTAGCTCAGCATTACAATCTTGAACCTTGCC TTTTCCTTTGCCTATACGCTGCGCCTTAGCTGCCTTGACTCCCATTGGACGTGGGATCTC CTCGTCATCAAGGGGGATAGCATCAGCATAATCTCGCTTCCTTTTGTTCGACTTGTCAAG CAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGTGCTTCTCGGTCCTAGTGGCATTTCC ATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGACACCCTTCAGTCAC



consensusID : consensus_4903#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence
                              [TTCTTGATCTCCCATGGACCATCATCAGCCATCTTAATTTGTTGCCACCAGCCTGTAAGACGTGTGTTGCAGAGGTGCAACACAGTAGACATCAAAAGCCTAATTGTTCCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGCGCTTCTCGGTCCTAGTGGCATTACCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGATGCCCTTCAGTCACATGGTGCATAGGGTTCGTGGTGTTTTTGATAAAATTAACCAAACCACCGAGCGGGCGAGATTCTAGTCCCCATTGTTCCAAATCAATTTGGACGTCCGTCTAGGCATCAGTAGGAGGACGATATGCAGATGAGCCCGCCATGGCTTGTGACGGTGGAAAAGGAAACCATGATGTCTGTGGGGTGGGGAACAAAGGACCTCCATATGGATACGGTGCTGCCGGCAGGATATGAACACCGGGAGGACCAGACGAGCTTGCAGACGAGTTTGCAGTGGCGCAAGGGGGTGGCGCAACCTCTCTCTTCGTCCGACGAGACATGGTGGAAGGGAACTAGGGTTTTGGTGCGGTAGAACTGTGGAAGAGGACAGGGGCGGCGGCCGTCGATCTATCCACCGGGGAGATGGGTTTTAGGGGCGATTTTGGGGCTTTGGCATTGTTCTACCTGCCAGCCCCCCTT]

[-] EMBL CA765670             [TTCTTGATCTCCCATGGACCATCATCAGCCATCTTAATTTGTTGCCACCAGCCTGTAAGACGTGTGTTGCAGAGGTGCAACACAGTAGACATCAAAAGCCTAATTGTTCCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGCGCTTCTCGGTCCTAGTGGCATTACCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGATGCCCTTCAGTCACATGGTGCATAGGGTTCGTGGTGTTTTTGATAAAATTAACCAAACCACCGAGCGGGCGAGATTCTAGTCCCCATTGTTCCAAATCAATTTGGACGTCCGTCTAGGCATCAGTAGGAGGACGATATGCAGATGAGCCCGCCATGGCTTGTGACGGTGGAAAAGGAAACCATGATGTCTGTGGGGTGGGGAACAAAGGACCTCCATATGGATACGGTGCTGCCGGCAGGATATGAACACCGGGAGGACCAGACGAGCTTGCAGACGAGTTTGCAGTGGCGCAAGGGGGTGGCGCAACCTCTCTCTTCGTCCGACGAGACATGGTGGAAGGGAACTAGGGTTTTGGTGCGGTAGAACTGTGGAAGAGGACAGGGGCGGCGGCCGTCGATCTATCCACCGGGGAGATGGGTTTTAGGGGCGATTTTGGGGCTTTGGCATTGTTCTACCTGCCAGCCCCCCTT]


>consensus_4903#1 TTCTTGATCTCCCATGGACCATCATCAGCCATCTTAATTTGTTGCCACCAGCCTGTAAGA CGTGTGTTGCAGAGGTGCAACACAGTAGACATCAAAAGCCTAATTGTTCCAGCCTCAAGT CTTCTTCAGTTGACCAGCCTAGGCGCTTCTCGGTCCTAGTGGCATTACCATTGTTGCCAT TCTCAACATTAATTGGCTGCAACTGATGCCCTTCAGTCACATGGTGCATAGGGTTCGTGG TGTTTTTGATAAAATTAACCAAACCACCGAGCGGGCGAGATTCTAGTCCCCATTGTTCCA AATCAATTTGGACGTCCGTCTAGGCATCAGTAGGAGGACGATATGCAGATGAGCCCGCCA TGGCTTGTGACGGTGGAAAAGGAAACCATGATGTCTGTGGGGTGGGGAACAAAGGACCTC CATATGGATACGGTGCTGCCGGCAGGATATGAACACCGGGAGGACCAGACGAGCTTGCAG ACGAGTTTGCAGTGGCGCAAGGGGGTGGCGCAACCTCTCTCTTCGTCCGACGAGACATGG TGGAAGGGAACTAGGGTTTTGGTGCGGTAGAACTGTGGAAGAGGACAGGGGCGGCGGCCG TCGATCTATCCACCGGGGAGATGGGTTTTAGGGGCGATTTTGGGGCTTTGGCATTGTTCT ACCTGCCAGCCCCCCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4903#0      CTTTTTTTTTAGTTAAATAGAGGATTAATAATCCAAACAGTGAAACAGTTACGATGATTC 60
consensus_4903#1      ------------------------------------------------------------
                                                                                  

consensus_4903#0      ACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTT 120
consensus_4903#1      ------------------------------------------------------------
                                                                                  

consensus_4903#0      GTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAG 180
consensus_4903#1      ------------------------------------------------------------
                                                                                  

consensus_4903#0      TTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCC-ATGGACCATCATCAGC 239
consensus_4903#1      -------------------------------TTCTTGATCTCCCATGGACCATCATCAGC 29
                                                     ************ ****************

consensus_4903#0      CATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGA 299
consensus_4903#1      CATCTTAATTTGTTGCCACCAGCCTGTAAGACGTGTGTTGCAGAGGTGCAACACAGTAGA 89
                      ****** ************************ ******** *******************

consensus_4903#0      CATCAAA-GCTTAATTGTTCC--TCACTGGTTTTTTGAAATATATCTTCTCTCATGCATT 356
consensus_4903#1      CATCAAAAGCCTAATTGTTCCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGCGCTTC 149
                      ******* ** **********   * *  ** ** *  * *  * *  *      ** * 

consensus_4903#0      TCAACATT-GCAACAAGCTCATACCTTACATCATCAGGCATATCTC-TTGTGTCT----T 410
consensus_4903#1      TCGGTCCTAGTGGCATTACCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGATGC 209
                      **     * *   **    ***   *  ***  ***    **  *   **   **     

consensus_4903#0      TGTTCAGTAACTCTCTATATGCTGCAATCATAGCGGTCTGG-------CAACCAACCTTC 463
consensus_4903#1      CCTTCAGTCACATGGTGCATA--GGGTTCGTGGTGTTTTTGATAAAATTAACCAAACCAC 267
                        ****** **    *  **   *   ** * * * * * *        ****** *  *

consensus_4903#0      TTCGCTT-CAAGATTATCACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTG 522
consensus_4903#1      CGAGCGGGCGAGATTCTAGTCCCCATTGTTCCAAATCAATTTGGACGTCCGTCTAGGCAT 327
                         **   * ***** *      **      *        *   **      **  **  

consensus_4903#0      CTCCTTGGCTGCTTCATGTGCAT----CCATAA--ACTTGTGGATGTCATCTTCTAGCTC 576
consensus_4903#1      CAGTAGGAGGACGATATGCAGATGAGCCCGCCATGGCTTGTGACGGTGGAAAAGGAAACC 387
                      *     *    *   ***   **    **   *   ******   **        *   *

consensus_4903#0      AGCAT-----TACAATCTTGAACCTTGCCTTTTCCTTTGCCTATACGCTGC-GCCTTAGC 630
consensus_4903#1      ATGATGTCTGTGGGGTGGGGAACAAAGGACCTCCATATGG--ATACGGTGCTGCCGGCAG 445
                      *  **     *    *   ****   *    * * * **   ***** *** ***     

consensus_4903#0      TGCCTTGACTCCCATTGGACGTGG-GATCTCCTCG------TCATCAAGGGGGATAGCAT 683
consensus_4903#1      GATATGAACACCGGGAGGACCAGACGAGCTTGCAGACGAGTTTGCAGTGGCGCAAGGGGG 505
                          *  ** **    ****  *  ** **    *      *      ** * *  *   

consensus_4903#0      CAGCATAA--TCTCGCTTCCTTTTGTTCGACTTGTC--AAGCAGCCTCAAGTCTTCTT-C 738
consensus_4903#1      TGGCGCAACCTCTCTCTTCGTCCGACGAGACATGGTGGAAGGGAACTAGGGTTTTGGTGC 565
                        **  **  **** **** *       *** **    ***    **   ** **  * *

consensus_4903#0      AGTTGACCAGCCTAGGTGCTTCTCGGTCCTAGT----GGCATTTCCATTGTTGCCAT--- 791
consensus_4903#1      GGTAGAACTGTGGAAGAGGACAGGGGCGGCGGCCGTCGATCTATCCACCGGGGAGATGGG 625
                       ** ** * *   * * *      **     *     *   * ****  *  *  **   

consensus_4903#0      TCTCAACATTAATTGGCTGCAACTGACACCCTTCAGTCAC------------ 831
consensus_4903#1      TTTTAGGGGCGATTTTGGGGCTTTGGCATTGTTCTACCTGCCAGCCCCCCTT 677
                      * * *      ***    *    ** **   ***   *              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)