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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence
[CTTTTTTTTTAGTTAAATAGAGGATTAATAATCCAAACAGTGAAACAGTTACGATGATTCACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTTGTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAGTTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCCATGGACCATCATCAGCCATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGACATCAAAGCTTAATTGTTCCTCACTGGTTTTTTGAAATATATCTTCTCTCATGCATTTCAACATTGCAACAAGCTCATACCTTACATCATCAGGCATATCTCTTGTGTCTTTGTTCAGTAACTCTCTATATGCTGCAATCATAGCGGTCTGGCAACCAACCTTCTTCGCTTCAAGATTATCACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTGCTCCTTGGCTGCTTCATGTGCATCCATAAACTTGTGGATGTCATCTTCTAGCTCAGCATTACAATCTTGAACCTTGCCTTTTCCTTTGCCTATACGCTGCGCCTTAGCTGCCTTGACTCCCATTGGACGTGGGATCTCCTCGTCATCAAGGGGGATAGCATCAGCATAATCTCGCTTCCTTTTGTTCGACTTGTCAAGCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGTGCTTCTCGGTCCTAGTGGCATTTCCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGACACCCTTCAGTCAC]
[+] EMBL CB621836 [CTTTTTTTTTAGTTAAATAGAGGATTAATAATCCAAACAGTGAAACAGTTACGATGATTCACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTTGTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAGTTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCCATGGACCATCATCAGCCATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGACATCAAAGCTTAATTGTTCCTCACTGGTTTTTTGAAATATATCTTCTCTCATGCATTTCAACATTGCAACAAGCTCATACCTTACATCATCAGGCATATCTCTTGTGTCTTTGTTCAGTAACTCTCTATATGCTGCAATCATAGCGGTCTGGCAACCAACCTTCTTCGCTTCAAGATTATCACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTGCTCCTTGGCTGCTTCATGTGCATCCATAAACTTGTGGATGTCATCTTCTAGCTCAGCATTACAATCTTGAACCTTGCCTTTTCCTTTGCCTATACGCTGCGCCTTAGCTGCCTTGACTCCCATTGGACGTGGGATCTCCTCGTCATCAAGGGGGATAGCATCAGCATAATCTCGCTTCCTTTTGTTCGACTTGTCAAGCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGTGCTTCTCGGTCCTAGTGGCATTTCCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGACACCCTTCAGTCAC]
[+] EMBL CB621835 [ ATTAATAATCCAAACA CCCTACAGTTACGATGATTCACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTTGTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAGTTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCCATGGACCATCATCAGCCATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGACATCAAAGCTTAATTGTTCCTCACTGGTTTTTTGAAATATATCTTCTCTCATGCATTTCAACATTGCAACAAGCTCATACCTTACATCATCAGGCATATCTCTTGTGTCTTTGTTCAGTAACTCTCTATATGCTGCAATCATAGCGGTCTGGCAACCAACCTTCTTCGCTTCAAGATTATCACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTGCTCCTTGGCTGCTTCATGTGCATCCATAAACTTGTGGATGTCATCTTCTAGCTCAGCATTACAATCTTGAACCTTGCCTTTTCCTTTGCCTATACGCTGCGCCTTAGCTGCCTTGACTCCCATTGGACGTGGGATCTCCTCGTCATCAAGGGGGATAGCATCAGCATAATCTCG ]
consensusID : consensus_4903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[TTCTTGATCTCCCATGGACCATCATCAGCCATCTTAATTTGTTGCCACCAGCCTGTAAGACGTGTGTTGCAGAGGTGCAACACAGTAGACATCAAAAGCCTAATTGTTCCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGCGCTTCTCGGTCCTAGTGGCATTACCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGATGCCCTTCAGTCACATGGTGCATAGGGTTCGTGGTGTTTTTGATAAAATTAACCAAACCACCGAGCGGGCGAGATTCTAGTCCCCATTGTTCCAAATCAATTTGGACGTCCGTCTAGGCATCAGTAGGAGGACGATATGCAGATGAGCCCGCCATGGCTTGTGACGGTGGAAAAGGAAACCATGATGTCTGTGGGGTGGGGAACAAAGGACCTCCATATGGATACGGTGCTGCCGGCAGGATATGAACACCGGGAGGACCAGACGAGCTTGCAGACGAGTTTGCAGTGGCGCAAGGGGGTGGCGCAACCTCTCTCTTCGTCCGACGAGACATGGTGGAAGGGAACTAGGGTTTTGGTGCGGTAGAACTGTGGAAGAGGACAGGGGCGGCGGCCGTCGATCTATCCACCGGGGAGATGGGTTTTAGGGGCGATTTTGGGGCTTTGGCATTGTTCTACCTGCCAGCCCCCCTT]
[-] EMBL CA765670 [TTCTTGATCTCCCATGGACCATCATCAGCCATCTTAATTTGTTGCCACCAGCCTGTAAGACGTGTGTTGCAGAGGTGCAACACAGTAGACATCAAAAGCCTAATTGTTCCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGCGCTTCTCGGTCCTAGTGGCATTACCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGATGCCCTTCAGTCACATGGTGCATAGGGTTCGTGGTGTTTTTGATAAAATTAACCAAACCACCGAGCGGGCGAGATTCTAGTCCCCATTGTTCCAAATCAATTTGGACGTCCGTCTAGGCATCAGTAGGAGGACGATATGCAGATGAGCCCGCCATGGCTTGTGACGGTGGAAAAGGAAACCATGATGTCTGTGGGGTGGGGAACAAAGGACCTCCATATGGATACGGTGCTGCCGGCAGGATATGAACACCGGGAGGACCAGACGAGCTTGCAGACGAGTTTGCAGTGGCGCAAGGGGGTGGCGCAACCTCTCTCTTCGTCCGACGAGACATGGTGGAAGGGAACTAGGGTTTTGGTGCGGTAGAACTGTGGAAGAGGACAGGGGCGGCGGCCGTCGATCTATCCACCGGGGAGATGGGTTTTAGGGGCGATTTTGGGGCTTTGGCATTGTTCTACCTGCCAGCCCCCCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4903#0 CTTTTTTTTTAGTTAAATAGAGGATTAATAATCCAAACAGTGAAACAGTTACGATGATTC 60
consensus_4903#1 ------------------------------------------------------------
consensus_4903#0 ACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTT 120
consensus_4903#1 ------------------------------------------------------------
consensus_4903#0 GTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAG 180
consensus_4903#1 ------------------------------------------------------------
consensus_4903#0 TTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCC-ATGGACCATCATCAGC 239
consensus_4903#1 -------------------------------TTCTTGATCTCCCATGGACCATCATCAGC 29
************ ****************
consensus_4903#0 CATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGA 299
consensus_4903#1 CATCTTAATTTGTTGCCACCAGCCTGTAAGACGTGTGTTGCAGAGGTGCAACACAGTAGA 89
****** ************************ ******** *******************
consensus_4903#0 CATCAAA-GCTTAATTGTTCC--TCACTGGTTTTTTGAAATATATCTTCTCTCATGCATT 356
consensus_4903#1 CATCAAAAGCCTAATTGTTCCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGCGCTTC 149
******* ** ********** * * ** ** * * * * * * ** *
consensus_4903#0 TCAACATT-GCAACAAGCTCATACCTTACATCATCAGGCATATCTC-TTGTGTCT----T 410
consensus_4903#1 TCGGTCCTAGTGGCATTACCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGATGC 209
** * * ** *** * *** *** ** * ** **
consensus_4903#0 TGTTCAGTAACTCTCTATATGCTGCAATCATAGCGGTCTGG-------CAACCAACCTTC 463
consensus_4903#1 CCTTCAGTCACATGGTGCATA--GGGTTCGTGGTGTTTTTGATAAAATTAACCAAACCAC 267
****** ** * ** * ** * * * * * * ****** * *
consensus_4903#0 TTCGCTT-CAAGATTATCACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTG 522
consensus_4903#1 CGAGCGGGCGAGATTCTAGTCCCCATTGTTCCAAATCAATTTGGACGTCCGTCTAGGCAT 327
** * ***** * ** * * ** ** **
consensus_4903#0 CTCCTTGGCTGCTTCATGTGCAT----CCATAA--ACTTGTGGATGTCATCTTCTAGCTC 576
consensus_4903#1 CAGTAGGAGGACGATATGCAGATGAGCCCGCCATGGCTTGTGACGGTGGAAAAGGAAACC 387
* * * *** ** ** * ****** ** * *
consensus_4903#0 AGCAT-----TACAATCTTGAACCTTGCCTTTTCCTTTGCCTATACGCTGC-GCCTTAGC 630
consensus_4903#1 ATGATGTCTGTGGGGTGGGGAACAAAGGACCTCCATATGG--ATACGGTGCTGCCGGCAG 445
* ** * * **** * * * * ** ***** *** ***
consensus_4903#0 TGCCTTGACTCCCATTGGACGTGG-GATCTCCTCG------TCATCAAGGGGGATAGCAT 683
consensus_4903#1 GATATGAACACCGGGAGGACCAGACGAGCTTGCAGACGAGTTTGCAGTGGCGCAAGGGGG 505
* ** ** **** * ** ** * * ** * * *
consensus_4903#0 CAGCATAA--TCTCGCTTCCTTTTGTTCGACTTGTC--AAGCAGCCTCAAGTCTTCTT-C 738
consensus_4903#1 TGGCGCAACCTCTCTCTTCGTCCGACGAGACATGGTGGAAGGGAACTAGGGTTTTGGTGC 565
** ** **** **** * *** ** *** ** ** ** * *
consensus_4903#0 AGTTGACCAGCCTAGGTGCTTCTCGGTCCTAGT----GGCATTTCCATTGTTGCCAT--- 791
consensus_4903#1 GGTAGAACTGTGGAAGAGGACAGGGGCGGCGGCCGTCGATCTATCCACCGGGGAGATGGG 625
** ** * * * * * ** * * * **** * * **
consensus_4903#0 TCTCAACATTAATTGGCTGCAACTGACACCCTTCAGTCAC------------ 831
consensus_4903#1 TTTTAGGGGCGATTTTGGGGCTTTGGCATTGTTCTACCTGCCAGCCCCCCTT 677
* * * *** * ** ** *** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||