These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2312 fasta sequence [AAAACTGCAGTCCAGTTATCTTGTGCTAGGTACTCTCTCTCTCTGGGTGCACCTGTCTGACCCCCAAGGCCCCAAGTTACTTCTTATTGATTCAACCCAGAAGGTTAGGCCTTACATTGAACTTTGAATTTCTCACTTTTTTCTGTATGGAATCATGCATTATTTCATTTCACTGCCCCCTGCATGAATATCTCTTATATCACAAAATTGATTCAATTCAGAAGGCTGGCCTTTTCATATCCTACAGCATTGCACTTTGTTAGTACTTATTAGGAATTCACTGGTCTGTCTTTTGATTTAGTGATTGATATAGTATATATTGATTCTTGATCAGGGAGGGAATCCTACAGATTACTGAAGATGGGGGAGGTGGTCAGTTCTGCTCTCGTTCATGAGACAGTGAACAAAATCATATCTGGCATGATTGACAAGTATGAGCGAAAATCAAGTGCGCAGGAACACATGGACAGGTTAGAGATGGCACAAATCAAGTTAGATCTTGCACTTGAGACATCCAAGAAGTGGCAGATCATTAGTGAGCCGTTGCTACGTTGGCAGAAGAAGCTGAAACGTGTTGCTGAAGAGTGTGATGACACAATACGCATGTGCAGGCAGCGTGTCCAGGAAGAACAAGAGGCCAAACAAGTAGCAAGGGATTCCTTCTTTCCTAGGCGAATTGCCCATGCCACCAAGTCACTGATATCGTCCATCTTTTATGGCAATATCGACGAGCCGACTAGATCTACCGTTCGAAGATTCGAGTGGTTTGCAGATGGAGCTAATGACTTTCTGAGATCTGTGGAGTCTGGAGGGACACCGCGTCGTTACTTGTTCTTCGACCCTCTTATTGGGCACCTTCTTGCAGGTGAAATGCTAGAGTACAAATTGGTTCAGGGAAACAAGCAACATTTGTTTTGGATACGGCCCAATAACATTGCAGAGAGGATAGAAGGTATGGTGTTCTTCGTTTACAATGATGGCACTGCACCTGAGGATAACTTTTTTCTTGGTATGATACTACAGATTTCAGAGAGTACAAACATAGTTGGCACTATAATTAAGTGCTTGCAGTTGTTTGCTCCTCATTTCGAGTCTGTAACTGAAACTGTCAGGAAAGAACTTACTCTGCTACCTACACAAGACTTCTCCTGGATACCACATTCTCGTTTATACCATTGGGACAACCTTCACAGTATAGCTACCGAATGGTTCCGCCCAAACCCAGTGTGTTGCAAGCATCATGATCAGAAGGTATGTGGTAGTGGCAACATGAACATGATAGAATTACCAGACTTCTCTCTAGAATCAGTTATTCAAGTGAATTTGCAGTGCCATGTTGCACTGCCTGGGTTCAGAGAACGGGGAACAATTGTCGAGGGCAAATCTTCTCTCAAAGAATATCTGCGTGGACCGCATCTGAATGTTCTACTTGCCTATACGCCTCACGGATCTTCAGAAAGCCTATTCCCATCAGTCGAGGGTTCTGTGATAGAGGTGATTAATGCTAATGAGCAGCATTGCTTGCATACAAATATTGCCTTGCAACAAATGGAAGAGATCATGTTGCCGAGGGCCGTAGATTATTTTCATCAGAATGCGAAAGCGACAGTGTATCAGATGCTTTGGAAGCCTAAACATGGTGTTGCATATCTTCATGCTGTGAAGGCGACCGTGAACATTCTGAGCACACGGAGGACCATTCGAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGATCATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCACGCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAATTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCTCCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAACCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTTTGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCTCTAGGAGAGGTGGAGCTAGTGCTAGTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTTGTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAAAATGAAAACTGAAAATGTCACCTAGTGGTCTGCTCTTTCTTGACCTCTGTAACTGCTTCTCCTTCTAATATATCCGGCAGAGCTCCTGCCGT] [+] EMBL AK102706 [AAAACTGCAGTCCAGTTATCTTGTGCTAGGTACTCTCTCTCTCTGGGTGCACCTGTCTGACCCCCAAGGCCCCAAGTTACTTCTTATTGATTCAACCCAGAAGGTTAGGCCTTACATTGAACTTTGAATTTCTCACTTTTTTCTGTATGGAATCATGCATTATTTCATTTCACTGCCCCCTGCATGAATATCTCTTATATCACAAAATTGATTCAATTCAGAAGGCTGGCCTTTTCATATCCTACAGCATTGCACTTTGTTAGTACTTATTAGGAATTCACTGGTCTGTCTTTTGATTTAGTGATTGATATAGTATATATTGATTCTTGATCAGGGAGGGAATCCTACAGATTACTGAAGATGGGGGAGGTGGTCAGTTCTGCTCTCGTTCATGAGACAGTGAACAAAATCATATCTGGCATGATTGACAAGTATGAGCGAAAATCAAGTGCGCAGGAACACATGGACAGGTTAGAGATGGCACAAATCAAGTTAGATCTTGCACTTGAGACATCCAAGAAGTGGCAGATCATTAGTGAGCCGTTGCTACGTTGGCAGAAGAAGCTGAAACGTGTTGCTGAAGAGTGTGATGACACAATACGCATGTGCAGGCAGCGTGTCCAGGAAGAACAAGAGGCCAAACAAGTAGCAAGGGATTCCTTCTTTCCTAGGCGAATTGCCCATGCCACCAAGTCACTGATATCGTCCATCTTTTATGGCAATATCGACGAGCCGACTAGATCTACCGTTCGAAGATTCGAGTGGTTTGCAGATGGAGCTAATGACTTTCTGAGATCTGTGGAGTCTGGAGGGACACCGCGTCGTTACTTGTTCTTCGACCCTCTTATTGGGCACCTTCTTGCAGGTGAAATGCTAGAGTACAAATTGGTTCAGGGAAACAAGCAACATTTGTTTTGGATACGGCCCAATAACATTGCAGAGAGGATAGAAGGTATGGTGTTCTTCGTTTACAATGATGGCACTGCACCTGAGGATAACTTTTTTCTTGGTATGATACTACAGATTTCAGAGAGTACAAACATAGTTGGCACTATAATTAAGTGCTTGCAGTTGTTTGCTCCTCATTTCGAGTCTGTAACTGAAACTGTCAGGAAAGAACTTACTCTGCTACCTACACAAGACTTCTCCTGGATACCACATTCTCGTTTATACCATTGGGACAACCTTCACAGTATAGCTACCGAATGGTTCCGCCCAAACCCAGTGTGTTGCAAGCATCATGATCAGAAGGTATGTGGTAGTGGCAACATGAACATGATAGAATTACCAGACTTCTCTCTAGAATCAGTTATTCAAGTGAATTTGCAGTGCCATGTTGCACTGCCTGGGTTCAGAGAACGGGGAACAATTGTCGAGGGCAAATCTTCTCTCAAAGAATATCTGCGTGGACCGCATCTGAATGTTCTACTTGCCTATACGCCTCACGGATCTTCAGAAAGCCTATTCCCATCAGTCGAGGGTTCTGTGATAGAGGTGATTAATGCTAATGAGCAGCATTGCTTGCATACAAATATTGCCTTGCAACAAATGGAAGAGATCATGTTGCCGAGGGCCGTAGATTATTTTCATCAGAATGCGAAAGCGACAGTGTATCAGATGCTTTGGAAGCCTAAACATGGTGTTGCATATCTTCATGCTGTGAAGGCGACCGTGAACATTCTGAGCACACGGAGGACCATTCGAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGATCATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCACGCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAATTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCTCCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAACCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTTTGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCTCTAGGAGAGGTGGAGCTAGTGCTAGTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTTGTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAAAATGAAAACTGAAAATGTCACCTAGTGGTCTGCTCTTTCTTGACCTCTGTAACTGCTTCTCCTTCTAATATATCCGGCAGAGCTCCTGCCGT] consensusID : consensus_4922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence [ACAAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGATCATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCACGCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAATTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCTCCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAACCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTTTGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCT--CTAGGAGAGGTGGAGCTAGTGCTAGTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTTGTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAAAATGAAAACTGAAAATGTCCCCTAGTGGTCTGCTCTTTCTTGACCTCTGTAAAAAAAAAAAAAAA] [-] EMBL CA759102 [ACAAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGATCATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCACGCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAATTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCTCCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAACCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTTTGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCT CTAGGAGAGGTGGAGCTAGTGCTAGTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTTGTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAAAATGAAAACTGAAAATGTCCCCTAGTGGTCTGCTCTTTCTTGACCTCTGTAAAAAAAAAAAAAAA] [-] EMBL AU225508 [ CCGCT CCATTTTGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCTAACTAGGAGAGGTGGAGCTAGTGCTAGTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTTGTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGAgcggc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4922#0 AAAACTGCAGTCCAGTTATCTTGTGCTAGGTACTCTCTCTCTCTGGGTGCACCTGTCTGA 60 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 CCCCCAAGGCCCCAAGTTACTTCTTATTGATTCAACCCAGAAGGTTAGGCCTTACATTGA 120 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 ACTTTGAATTTCTCACTTTTTTCTGTATGGAATCATGCATTATTTCATTTCACTGCCCCC 180 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 TGCATGAATATCTCTTATATCACAAAATTGATTCAATTCAGAAGGCTGGCCTTTTCATAT 240 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 CCTACAGCATTGCACTTTGTTAGTACTTATTAGGAATTCACTGGTCTGTCTTTTGATTTA 300 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 GTGATTGATATAGTATATATTGATTCTTGATCAGGGAGGGAATCCTACAGATTACTGAAG 360 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 ATGGGGGAGGTGGTCAGTTCTGCTCTCGTTCATGAGACAGTGAACAAAATCATATCTGGC 420 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 ATGATTGACAAGTATGAGCGAAAATCAAGTGCGCAGGAACACATGGACAGGTTAGAGATG 480 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 GCACAAATCAAGTTAGATCTTGCACTTGAGACATCCAAGAAGTGGCAGATCATTAGTGAG 540 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 CCGTTGCTACGTTGGCAGAAGAAGCTGAAACGTGTTGCTGAAGAGTGTGATGACACAATA 600 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 CGCATGTGCAGGCAGCGTGTCCAGGAAGAACAAGAGGCCAAACAAGTAGCAAGGGATTCC 660 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 TTCTTTCCTAGGCGAATTGCCCATGCCACCAAGTCACTGATATCGTCCATCTTTTATGGC 720 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 AATATCGACGAGCCGACTAGATCTACCGTTCGAAGATTCGAGTGGTTTGCAGATGGAGCT 780 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 AATGACTTTCTGAGATCTGTGGAGTCTGGAGGGACACCGCGTCGTTACTTGTTCTTCGAC 840 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 CCTCTTATTGGGCACCTTCTTGCAGGTGAAATGCTAGAGTACAAATTGGTTCAGGGAAAC 900 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 AAGCAACATTTGTTTTGGATACGGCCCAATAACATTGCAGAGAGGATAGAAGGTATGGTG 960 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 TTCTTCGTTTACAATGATGGCACTGCACCTGAGGATAACTTTTTTCTTGGTATGATACTA 1020 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 CAGATTTCAGAGAGTACAAACATAGTTGGCACTATAATTAAGTGCTTGCAGTTGTTTGCT 1080 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 CCTCATTTCGAGTCTGTAACTGAAACTGTCAGGAAAGAACTTACTCTGCTACCTACACAA 1140 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 GACTTCTCCTGGATACCACATTCTCGTTTATACCATTGGGACAACCTTCACAGTATAGCT 1200 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 ACCGAATGGTTCCGCCCAAACCCAGTGTGTTGCAAGCATCATGATCAGAAGGTATGTGGT 1260 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 AGTGGCAACATGAACATGATAGAATTACCAGACTTCTCTCTAGAATCAGTTATTCAAGTG 1320 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 AATTTGCAGTGCCATGTTGCACTGCCTGGGTTCAGAGAACGGGGAACAATTGTCGAGGGC 1380 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 AAATCTTCTCTCAAAGAATATCTGCGTGGACCGCATCTGAATGTTCTACTTGCCTATACG 1440 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 CCTCACGGATCTTCAGAAAGCCTATTCCCATCAGTCGAGGGTTCTGTGATAGAGGTGATT 1500 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 AATGCTAATGAGCAGCATTGCTTGCATACAAATATTGCCTTGCAACAAATGGAAGAGATC 1560 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 ATGTTGCCGAGGGCCGTAGATTATTTTCATCAGAATGCGAAAGCGACAGTGTATCAGATG 1620 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 CTTTGGAAGCCTAAACATGGTGTTGCATATCTTCATGCTGTGAAGGCGACCGTGAACATT 1680 consensus_4922#1 ------------------------------------------------------------ consensus_4922#0 CTGAGCACACGGAGGACCATTCGAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGAT 1740 consensus_4922#1 --------------------ACAAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGAT 40 * ************************************* consensus_4922#0 CATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCAC 1800 consensus_4922#1 CATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCAC 100 ************************************************************ consensus_4922#0 GCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAA 1860 consensus_4922#1 GCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAA 160 ************************************************************ consensus_4922#0 TTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCT 1920 consensus_4922#1 TTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCT 220 ************************************************************ consensus_4922#0 CCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAA 1980 consensus_4922#1 CCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAA 280 ************************************************************ consensus_4922#0 CCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTT 2040 consensus_4922#1 CCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTT 340 ************************************************************ consensus_4922#0 TGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCTCTAGGAGAGGTGGAGCTAGTGCTA 2100 consensus_4922#1 TGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCTCTAGGAGAGGTGGAGCTAGTGCTA 400 ************************************************************ consensus_4922#0 GTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTT 2160 consensus_4922#1 GTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTT 460 ************************************************************ consensus_4922#0 GTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAA 2220 consensus_4922#1 GTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAA 520 ************************************************************ consensus_4922#0 AATGAAAACTGAAAATGTCACCTAGTGGTCTGCTCTTTCTTGACCTCTGTAACTGCTTCT 2280 consensus_4922#1 AATGAAAACTGAAAATGTCCCCTAGTGGTCTGCTCTTTCTTGACCTCTGTAAAAAAAAAA 580 ******************* ******************************** consensus_4922#0 CCTTCTAATATATCCGGCAGAGCTCCTGCCGT 2312 consensus_4922#1 AAAAA--------------------------- 585 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||