cluster # 4928

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Oryza sativa
cluster # 4928 cluster # 4928 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4928#0 length = 837 sequences # 2

consensus_4928#1 length = 453 sequences # 1

consensusID : consensus_4928#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 837
fasta sequence

                              [TTTTTTGGTTTCACATCAAGTTTGATTTATAGCAAATTAATAAAATCATAATAGATTTACAACAAATGTCACACAAGAGCACCAATAATTAAGATAGAAACACAAAAGAAATACATATCCACCATCCAAATTGAATTCCACACATCCCAAATTTATGAAAAGCACGCGCGTGTAAACGCCGCAAATATAGACACCGCATTTACATGGGGTGCCTAGTTTTAGTGCTTGGGAGGGCATATCGCCGGCCGGAAGGCGAGAGGACCGGCGGCATAAACAACGTTATCGTAGCCCTGACCAGTCCATCGCTTACCCTCGTCACGGAGTGGCGCACCCTTGATGTCAGAGTAGTTGATGTTTGGGGGGGGTGGTTGCACTTGAAATCCGGCGACGCCTGAAGTCGTACGTGGCACGCCTTACTCGGATCACCCATGAAGAAGTCAGAGACTTTGGTCACGCCGAGCTCCGTCTGGAAGTAGCCGCTCTCGTCGGCGATGGCCCGCTTGCACTCCATGACACGATTCTTGGTGTCGTGGCAGGTAACGAACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTCCGGTACGCGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGCCGGCGGCGGCGGGGTGTACTGCTGCGGCGGCGGCGGCGATGGTGTGGTGTAGCCGTTGTTGGCAGTGGCGCCGGCGGCCAGGAGGGACACGAGGATCGCGAGAGGAAGGAAGGCAGCCATTGCTCGGAGTCGGAGCTAGCTTGGTGTTCAACTTAAGATGGTTTATCTTAACCTGAAGT]

[+] EMBL CF291044             [TTTTTTGGTTTCACATCAAGTTTGATTTATAGCAAATTAATAAAATCATAATAGATTTACAACAAATGTCACACAAGAGCACCAATAATTAAGATAGAAACACAAAAGAAATACATATCCACCATCCAAATTGAATTCCACACATCCCAAATTTATGAAAAGCACGCGCGTGTAAACGCCGCAAATATAGACACCGCATTTACATGGGGTGCCTAGTTTTAGTGCTTGGGAGGGCATATCGCCGGCCGGAAGGCGAGAGGACCGGCGGCATAAACAACGTTATCGTAGCCCTGACCAGTCCATCGCTTACCCTCGTCACGGAGTGGCGCACCCTTGATGTCAGAGTAGTTGATGTTTGGGGGGGGTGGTTGCACTTGAAATCCGGCGACGCCTGAAGTCGTACGTGGCACGCCTTACTCGGATCACCCATGAAGAAGTCAGAGACTTTGGTCACGCCGAGCTCCGTCTGGAAGTAGCCGCTCTCGTCGGCGATGGCCCGCTTGCACTCCATGACACGATTCTTGGTGTCGTGGCAGGTAACGAACACCTCCGC                                                                                                                                                                                                                                                                                            ]
[-] EMBL CF291045             [                                                                                                                                                                                                                                                                                                                                                                                           ATCCGGCGACGCCTGAAGTCGTACGTGGCACGCCTTACTCGGATCACCCATGAAGAAGTCAGAGACTTTGGTCACGCCGAGCTCCGTCTGGAAGTAGCCGCTCTCGTCGGCGATGGCCCGCTTGCACTCCATGACACGATTCTTGGTGTCGTGGCAGGTAACGAACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTCCGGTACGCGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGCCGGCGGCGGCGGGGTGTACTGCTGCGGCGGCGGCGGCGATGGTGTGGTGTAGCCGTTGTTGGCAGTGGCGCCGGCGGCCAGGAGGGACACGAGGATCGCGAGAGGAAGGAAGGCAGCCATTGCTCGGAGTCGGAGCTAGCTTGGTGTTCAACTTAAGATGGTTTATCTTAACCTGAAGT]




>consensus_4928#0
TTTTTTGGTTTCACATCAAGTTTGATTTATAGCAAATTAATAAAATCATAATAGATTTAC
AACAAATGTCACACAAGAGCACCAATAATTAAGATAGAAACACAAAAGAAATACATATCC
ACCATCCAAATTGAATTCCACACATCCCAAATTTATGAAAAGCACGCGCGTGTAAACGCC
GCAAATATAGACACCGCATTTACATGGGGTGCCTAGTTTTAGTGCTTGGGAGGGCATATC
GCCGGCCGGAAGGCGAGAGGACCGGCGGCATAAACAACGTTATCGTAGCCCTGACCAGTC
CATCGCTTACCCTCGTCACGGAGTGGCGCACCCTTGATGTCAGAGTAGTTGATGTTTGGG
GGGGGTGGTTGCACTTGAAATCCGGCGACGCCTGAAGTCGTACGTGGCACGCCTTACTCG
GATCACCCATGAAGAAGTCAGAGACTTTGGTCACGCCGAGCTCCGTCTGGAAGTAGCCGC
TCTCGTCGGCGATGGCCCGCTTGCACTCCATGACACGATTCTTGGTGTCGTGGCAGGTAA
CGAACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTCCGGTACG
CGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGCCG
GCGGCGGCGGGGTGTACTGCTGCGGCGGCGGCGGCGATGGTGTGGTGTAGCCGTTGTTGG
CAGTGGCGCCGGCGGCCAGGAGGGACACGAGGATCGCGAGAGGAAGGAAGGCAGCCATTG
CTCGGAGTCGGAGCTAGCTTGGTGTTCAACTTAAGATGGTTTATCTTAACCTGAAGT

consensusID : consensus_4928#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [GCATGCCTTGCTCGGATCACCCATAAAGAAGTCAGAGACTTTAGTCACGCCGAGCTCCGTCTGGAAGTAGCCGCTCTCGTCGGCGATAGCCCGCTTGTACTCCATGACACGATTCTTGGCGTCGTGGCAGGTAACAGACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTNNCCGGTACACGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGCCGGCGGCGGCGGGGTGTACTGCTGCTGCGGCGGCGGCGGCGGTGATGGTGTGGTGTAGCCATTGTTAGCAGTGGCGCCGGCGGCTAGGAGGGACACGAGGATCGCGAGAGGAAGCTGGAAGGCAGCCATTGCTCGGAGCTTGCTTGGTGCTCGATTGAAGATGGTTTATCTTAACCTGAAGTTTTGGTGTTTTCTACTC]

[-] EMBL CF291360             [GCATGCCTTGCTCGGATCACCCATAAAGAAGTCAGAGACTTTAGTCACGCCGAGCTCCGTCTGGAAGTAGCCGCTCTCGTCGGCGATAGCCCGCTTGTACTCCATGACACGATTCTTGGCGTCGTGGCAGGTAACAGACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTNNCCGGTACACGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGCCGGCGGCGGCGGGGTGTACTGCTGCTGCGGCGGCGGCGGCGGTGATGGTGTGGTGTAGCCATTGTTAGCAGTGGCGCCGGCGGCTAGGAGGGACACGAGGATCGCGAGAGGAAGCTGGAAGGCAGCCATTGCTCGGAGCTTGCTTGGTGCTCGATTGAAGATGGTTTATCTTAACCTGAAGTTTTGGTGTTTTCTACTC]




>consensus_4928#1
GCATGCCTTGCTCGGATCACCCATAAAGAAGTCAGAGACTTTAGTCACGCCGAGCTCCGT
CTGGAAGTAGCCGCTCTCGTCGGCGATAGCCCGCTTGTACTCCATGACACGATTCTTGGC
GTCGTGGCAGGTAACAGACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATG
CGTGTTNNCCGGTACACGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAAC
TTGTCACTGTGGGCCGGCGGCGGCGGGGTGTACTGCTGCTGCGGCGGCGGCGGCGGTGAT
GGTGTGGTGTAGCCATTGTTAGCAGTGGCGCCGGCGGCTAGGAGGGACACGAGGATCGCG
AGAGGAAGCTGGAAGGCAGCCATTGCTCGGAGCTTGCTTGGTGCTCGATTGAAGATGGTT
TATCTTAACCTGAAGTTTTGGTGTTTTCTACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4928#0      TTTTTTGGTTTCACATCAAGTTTGATTTATAGCAAATTAATAAAATCATAATAGATTTAC 60
consensus_4928#1      ------------------------------------------------------------
                                                                                  

consensus_4928#0      AACAAATGTCACACAAGAGCACCAATAATTAAGATAGAAACACAAAAGAAATACATATCC 120
consensus_4928#1      ------------------------------------------------------------
                                                                                  

consensus_4928#0      ACCATCCAAATTGAATTCCACACATCCCAAATTTATGAAAAGCACGCGCGTGTAAACGCC 180
consensus_4928#1      ------------------------------------------------------------
                                                                                  

consensus_4928#0      GCAAATATAGACACCGCATTTACATGGGGTGCCTAGTTTTAGTGCTTGGGAGGGCATATC 240
consensus_4928#1      ------------------------------------------------------------
                                                                                  

consensus_4928#0      GCCGGCCGGAAGGCGAGAGGACCGGCGGCATAAACAACGTTATCGTAGCCCTGACCAGTC 300
consensus_4928#1      ------------------------------------------------------------
                                                                                  

consensus_4928#0      CATCGCTTACCCTCGTCACGGAGTGGCGCACCCTTGATGTCAGAGTAGTTGATGTTTGGG 360
consensus_4928#1      ------------------------------------------------------------
                                                                                  

consensus_4928#0      GGGGGTGGTTGCACTTGAAATCCGGCGACGCCTGAAGTCGTACGTGGCACGCCTTACTCG 420
consensus_4928#1      ----------------------------------------------GCATGCCTTGCTCG 14
                                                                    *** ***** ****

consensus_4928#0      GATCACCCATGAAGAAGTCAGAGACTTTGGTCACGCCGAGCTCCGTCTGGAAGTAGCCGC 480
consensus_4928#1      GATCACCCATAAAGAAGTCAGAGACTTTAGTCACGCCGAGCTCCGTCTGGAAGTAGCCGC 74
                      ********** ***************** *******************************

consensus_4928#0      TCTCGTCGGCGATGGCCCGCTTGCACTCCATGACACGATTCTTGGTGTCGTGGCAGGTAA 540
consensus_4928#1      TCTCGTCGGCGATAGCCCGCTTGTACTCCATGACACGATTCTTGGCGTCGTGGCAGGTAA 134
                      ************* ********* ********************* **************

consensus_4928#0      CGAACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTCC--GGTA 598
consensus_4928#1      CAGACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTNNCCGGTA 194
                      *  *************************************************    ****

consensus_4928#0      CGCGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGC 658
consensus_4928#1      CACGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGC 254
                      * **********************************************************

consensus_4928#0      CGGCGGCGGCGGGGTGTACTGCTGC------GGCGGCGGCGGCGATGGTGTGGTGTAGCC 712
consensus_4928#1      CGGCGGCGGCGGGGTGTACTGCTGCTGCGGCGGCGGCGGCGGTGATGGTGTGGTGTAGCC 314
                      *************************      *********** *****************

consensus_4928#0      GTTGTTGGCAGTGGCGCCGGCGGCCAGGAGGGACACGAGGATCGCGAGAGGAAG---GAA 769
consensus_4928#1      ATTGTTAGCAGTGGCGCCGGCGGCTAGGAGGGACACGAGGATCGCGAGAGGAAGCTGGAA 374
                       ***** ***************** *****************************   ***

consensus_4928#0      GGCAGCCATTGCTCGGAGTCGGAGCTAGCTTGGTGTTCAACTTAAGATGGTTTATCTTAA 829
consensus_4928#1      GGCAGCCATTGCTCG------GAGCTTGCTTGGTGCTCGATTGAAGATGGTTTATCTTAA 428
                      ***************      ***** ******** ** * * *****************

consensus_4928#0      CCTGAAGT----------------- 837
consensus_4928#1      CCTGAAGTTTTGGTGTTTTCTACTC 453
                      ********