These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [TTTTTTTTTTTTTTTATTGGTATCTGATTTGATTTTCACCTTGAACACATAATTTAGCAGTAATTATATACAGTCCAACTTTGTTCTTCCTCTCAGGCAAGGGTGCCAACCAAACAAGTGTAGTCCCAGCAGCCTGACCAAGCAATTTTCATCTACTTCTTCTATGCCTCCCAGGCGTGCAAAATTTTCAGGCATGGGACTCAGGGCACCAACCAAACAGGCCCTTTCCCCAATTGATAAGCATGCGATCAAGAACACGGCACGAAATGAACAAACTCAGCAGCCAGACAGCAACAAGACAACAAATACATCACACGTCTTCAGCACTTCTAGCTTCCTCTTCCATTTATTGATTTATTCACATTTGTGGACAAACCATCATTAGCCAATTTCCGAGCAAAAACACAAACTTTCTGCAGAACTCTCGCCTTCCAAATGTTGCACCAAAATTGCCGATTATCATCAAGGTCTCTTTCAGATGCATTGCTAAGTCTGTCCGCACCATGAACAGAGTTTCCCACTTCTCTGATTTTCTCAAACTGTCAAGCAATGTAAGCACAAAACACCTTTTTTTTGGATAGTGGATAAGAATCCGGCCTCCATATCCACGAGTGGATATACACGACCAAAGTCACAAAACATCTAGGTCGACATGTTGTTGCAC] [+] EMBL CA760874 [TTTTTTTTTTTTTTTATTGGTATCTGATTTGATTTTCACCTTGAACACATAATTTAGCAGTAATTATATACAGTCCAACTTTGTTCTTCCTCTCAGGCAAGGGTGCCAACCAAACAAGTGTAGTCCCAGCAGCCTGACCAAGCAATTTTCATCTACTTCTTCTATGCCTCCCAGGCGTGCAAAATTTTCAGGCATGGGACTCAGGGCACCAACCAAACAGGCCCTTTCCCCAATTGATAAGCATGCGATCAAGAACACGGCACGAAATGAACAAACTCAGCAGCCAGACAGCAACAAGACAACAAATACATCACACGTCTTCAGCACTTCTAGCTTCCTCTTCCATTTATTGATTTATTCACATTTGTGGACAAACCATCATTAGCCAATTTCCGAGCAAAAACACAAACTTTCTGCAGAACTCTCGCCTTCCAAATGTTGCACCAAAATTGCCGATTATCATCAAGGTCTCTTTCAGATGCATTGCTAAGTCTGTCCGCACCATGAACAGAGTTTCCCACTTCTCTGATTTTCTCAAACTGTCAAGCAATGTAAGCACAAAACACCTTTTTTTTGGATAGTGGATAAGAATCCGGCCTCCATATCCACGAGTGGATATACACGACCAAAGTCACAAAACATCTAGGTCGACATGTTGTTGCAC] consensusID : consensus_4931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence [AGACAAGGGGGAGAGGATTAGAACTGTAATCCTCTCGTTATTAGGCTGCACGACGCTGCCACAGCCACCGTCGTGTCAGACTCTACACAAAGCCGTCGCAGCCTGCAGCCGTNGCCGTCGCGCGAAGCTCCTGCCGCCGCCTGCCAGAGTGCCGCTCCCATNGTCGTGAGAAGCCACTTCGAATCCCGTCGTCTTTGCTGCTTCACTAGATCTGATTGTCCTCATGAAGGAGCTCTGCCCCTTTGCTGGATCTTGCCGTTGTGTGAAGAGGGAAGAAGCCGCCGTATCTTGCTTTCTTTGATGGATGTGGCATGGATTTGAGATTTCCTTCCTCCTGTTCTTTCTTTTTTCCTTTCGTTGATGGATGCGGCGTGGATTTGGGGACTCTTTTTCTCCCCTTCTTGATGGCGTGGATTTGTGGATTTCTTTCTCTTTTTTTCCATCTTGATGAATGCAGCGATGCATATAATTTGCACGTAGAAGGCTGTTTGGTAGATGAATCTATATGGAAGGCGATGCTATTGTGATCCGACGCGTTCGCAGCTATTGTTATCTGATTTGATTTTCACCTTGAACACATAATTTAGCAGTAATTATATACAAAAAAA] [-] EMBL CA763315 [AGACAAGGGGGAGAGGATTAGAACTGTAATCCTCTCGTTATTAGGCTGCACGACGCTGCCACAGCCACCGTCGTGTCAGACTCTACACAAAGCCGTCGCAGCCTGCAGCCGTNGCCGTCGCGCGAAGCTCCTGCCGCCGCCTGCCAGAGTGCCGCTCCCATNGTCGTGAGAAGCCACTTCGAATCCCGTCGTCTTTGCTGCTTCACTAGATCTGATTGTCCTCATGAAGGAGCTCTGCCCCTTTGCTGGATCTTGCCGTTGTGTGAAGAGGGAAGAAGCCGCCGTATCTTGCTTTCTTTGATGGATGTGGCATGGATTTGAGATTTCCTTCCTCCTGTTCTTTCTTTTTTCCTTTCGTTGATGGATGCGGCGTGGATTTGGGGACTCTTTTTCTCCCCTTCTTGATGGCGTGGATTTGTGGATTTCTTTCTCTTTTTTTCCATCTTGATGAATGCAGCGATGCATATAATTTGCACGTAGAAGGCTGTTTGGTAGATGAATCTATATGGAAGGCGATGCTATTGTGATCCGACGCGTTCGCAGCTATTGTTATCTGATTTGATTTTCACCTTGAACACATAATTTAGCAGTAATTATATACAAAAAAA] [+] EMBL CA766922 [ TAGAACTGTAATCCTCTCGTTATTAGGCTGCACGACGCTGCCACAGCCACCGTCGTGTCAGACTCTACACAAAGCCGTCGCAGCCTGCAGCCGTTGCCGTCGCGCGAAGCTCCTGCCGCCGCCTGCCAGAGTGCCGCTCCCATCGTCGTGAGAAGCCACTTCGAATCCCGTCGTCTCTGCTGCTTCACTAGATCTGATTGTCCTCATGAAGGAGCTCTGCCCCTTTGCTGGATCTTGCCGTTGTGTGAAGAGGGAAGAAGCCGCCGTATCTTGCTTTCTTTGATGGATGTGGCATGGATTTGAGATTTCCTTCCTCCTGTTCTTTCTTTTTTCCTTTCGTTGATGGATGCGGCGTGGATTTGGGGACTCTTTTTCTCCCCTTCTTGATGGCGTGGATTTGTGGATTTCTTTCTCTTTTTTTCCATCTTGATGAATGCAGCGATGCATATAATTTGCACGTAGAAGGCTGTTTGGTAGATGAATCTATATGGAAGGCGATGCTATTGTGATCCGACGCGTTCGCAGCTATTGGTATCTGATTTGATTTTCACCTTGAACACATAATTTAGCAGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4931#0 TTTTTTTTTTTTTTTATTGGTATCTGATTTGATTT-TCACCTTGAACACATAATTTAGCA 59 consensus_4931#1 ----------AGACAAGGGGGAGAGGATTAGAACTGTAATCCTCTCGTTATTAGGCTGCA 50 * ** * **** ** * * * * * ** * *** consensus_4931#0 GTAATTATATACAGTCCAACTTTGTTCTTCCTCTCAGGCAAGGGTGCCAACCAAACAAGT 119 consensus_4931#1 CGACGCTGCCACAG-CCACCGTCGTGTCAGACTCTACACAAAGCCGTCG--CAGCC---T 104 * **** *** * * ** * *** * * * ** * * consensus_4931#0 GTAGTCCCAGCAGCCTGACCAAGCAATTTTCATCTACTTCTTCTATGCCTCCCAGGCGTG 179 consensus_4931#1 GCAGCCGTNGCCGTCGCGCGAAGCTCCTGCCGCCGCCTGCCAGAGTGCC------GCTCC 158 * ** * ** * * * **** * * * ** * **** ** consensus_4931#0 CAAAATTTTCAGGCATGGGACTCAGGGCACCAACCAAACAGGCCCTTTCCCCAATTGATA 239 consensus_4931#1 CATNGTCGTGAG--AAGCCACTTCGAATCCCGTCGTCTTTGCTGCTTCACTAGATCTGAT 216 ** * * ** * * *** * ** * * *** * ** consensus_4931#0 AGCATGCGATCAAGAACACGGCACGAAATGAACAAACTCAGCAGCCAGACAGCAACAAGA 299 consensus_4931#1 TGTCCTCATGAAGGAGCTCTGCCCCTT-TGCTGGATCTTGCCGTTGTGTGAAGAGGGAAG 275 * * * ** * * ** * ** * ** * * * * * consensus_4931#0 CAACAAATACATCACACGT-CTTCAGCACTTCTAGCTTCCTCTTCCATTTATTGATTTAT 358 consensus_4931#1 AAGCCGCCGTATCTTGCTTTCTTTGATGGATGTGGCATGGATTTGAGAT--TTCCTTCCT 333 * * *** * * *** * * ** * ** * ** ** * consensus_4931#0 TCACATTTGTGGACAAACCATCATTAGCCAATTTCCGAGCAAAAACACAAACTTTCTGCA 418 consensus_4931#1 CCTGTTCTTTCTTTTTTCCTTTCGTTGATGGATGCGGCGTGGATTTGGGGACTCTTT--- 390 * * * * ** * * * * * * * * *** * * consensus_4931#0 GAACTCTCGCCTTCCAAATGTTGCACCAAAATTGCCGATTATCATCAAGGTCTCTTTCAG 478 consensus_4931#1 ---TTCTCCCCTTCTTGATGGCGT---GGATTTGTGGATT-TCTTTCTCTTTTTTTCCAT 443 **** ***** *** * * *** **** ** * * * ** ** consensus_4931#0 ATGCATTGCTAAGTCTGTCCGCACCAT--GAACAGAGTTTCCCACTTCTCTGATTTTCTC 536 consensus_4931#1 CTTGATGAATGCAGCGATGCATATAATTTGCACGTAGAAGGCTGTTTGGTAGATGAATCT 503 * ** * * * * * ** * ** ** * ** *** consensus_4931#0 AAACTGTCAAGCAATGTAAGCACAAAACACCTTTTTTTTGGATAGTGGATAAGAATCCGG 596 consensus_4931#1 ATA-TGGAAGGCGATGCTATTGTGATCCGACGCGTTCGCAGCTATTGTTATCTGATTTGA 562 * * ** * ** *** * * * * ** * ** ** ** * consensus_4931#0 CCTCCATATCCACGAGTGGATATACACGACCAAAGTCACAAAACATCTAGGTCGACATGT 656 consensus_4931#1 TTTTCACCTTGAACACATAATTTAGCAGTAATTATATACAAAAAAA-------------- 608 * ** * * * ** ** * * ****** * consensus_4931#0 TGTTGCAC 664 consensus_4931#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||