These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence [ATCAAAATCAACCCACGAGCTCTTCCTCCCACCTCCATGGCCGCCACCCACCCCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGTCGTCGTCCTCGTCGTAGCGGCGACACCGGCGGCGGCGAGCGGCAGCGGGACGTCGACGCCGACGGCGTACGAGATGCTGGAGAGGTACGACTTCCCGCGGGGATCCTGCCGGTGGGGGTGGAGGGGTACGAGCTCCGGGAGGACGGGAGCTTCGAGGTGTACTTCCCGCGGGACTGCGAGTTCATGCTGGCGAGGACGTGGCTGGTCCGGTACGGCGCCCGCATCGCCGGCGCCGCCGCCTCCGGCCGGCTCACGTCGCTCCAGGGCGTCTACGTCAAGGTGCTCTTCGTCTGGCTCCCCGTCGGCGAGGTCGACCGCTCCGGCGACACTCTCAGCTTCTACATCGGCCCCGTCTCCACCTCCTTCCCCCTCTCCGACTTCGCCCACAGCCCGCACTGCCGCGGTTACGACCACCTCCCCGCCGCCGCCGCCGCCGCCGCTGCCGCCTTGTGATTGGGTAGAGATGGGTAGTTCATTAATTAATCTGGGTGATTTGGCTGGGGTAATTACGTGTAATTAATCACAGGTGCTCCTGGTTGATTGGCTATTGATGCGAATGGAATTTACGCCACTATGGGATTTATTTTGAGTATATCATTTGGTGGCTTCTTTATGAACAAGTGTTGGATGCAGATGCTG] [+] EMBL AK106324 [ATCAAAATCAACCCACGAGCTCTTCCTCCCACCTCCATGGCCGCCACCCACCCCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGTCGTCGTCCTCGTCGTAGCGGCGACACCGGCGGCGGCGAGCGGCAGCGGGACGTCGACGCCGACGGCGTACGAGATGCTGGAGAGGTACGACTTCCCGCGGGGATCCTGCCGGTGGGGGTGGAGGGGTACGAGCTCCGGGAGGACGGGAGCTTCGAGGTGTACTTCCCGCGGGACTGCGAGTTCATGCTGGCGAGGACGTGGCTGGTCCGGTACGGCGCCCGCATCGCCGGCGCCGCCGCCTCCGGCCGGCTCACGTCGCTCCAGGGCGTCTACGTCAAGGTGCTCTTCGTCTGGCTCCCCGTCGGCGAGGTCGACCGCTCCGGCGACACTCTCAGCTTCTACATCGGCCCCGTCTCCACCTCCTTCCCCCTCTCCGACTTCGCCCACAGCCCGCACTGCCGCGGTTACGACCACCTCCCCGCCGCCGCCGCCGCCGCCGCTGCCGCCTTGTGATTGGGTAGAGATGGGTAGTTCATTAATTAATCTGGGTGATTTGGCTGGGGTAATTACGTGTAATTAATCACAGGTGCTCCTGGTTGATTGGCTATTGATGCGAATGGAATTTACGCCACTATGGGATTTATTTTGAGTATATCATTTGGTGGCTTCTTTATGAACAAGTGTTGGATGCAGATGCTG] consensusID : consensus_4943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [TCGGCGAGGTCGACCGCTCCGGCGACACTCTCAGCTTTTACATCGGCCCCGTCTCCACCTCCTTCCCCCTCTCCGACTTCGCCCACAGCCCGCACTGCCGCGGTTACGACCCCCTCCCCGCCGCCGCCGCCGCCGCCGCTGCCGCCTTGTGATTGGGTAGAGATGGGTAGTTCATTAATTAATCTGGGTGATTTGGCTGGGGTCATTACGTGTAATTAATCACACGGTGCTCCTGGTTGATTGGCTATTGATGCGAATGGAATTTACCCCCCTATGGGATTTATTTTGAGTATATCATTTGGTGGCTTCTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCANCAAAAAAAAAA] [+] EMBL BM422074 [TCGGCGAGGTCGACCGCTCCGGCGACACTCTCAGCTTTTACATCGGCCCCGTCTCCACCTCCTTCCCCCTCTCCGACTTCGCCCACAGCCCGCACTGCCGCGGTTACGACCCCCTCCCCGCCGCCGCCGCCGCCGCCGCTGCCGCCTTGTGATTGGGTAGAGATGGGTAGTTCATTAATTAATCTGGGTGATTTGGCTGGGGTCATTACGTGTAATTAATCACACGGTGCTCCTGGTTGATTGGCTATTGATGCGAATGGAATTTACCCCCCTATGGGATTTATTTTGAGTATATCATTTGGTGGCTTCTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCANCAAAAAAAAAA] consensusID : consensus_4943#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [CTAGCTTCTACATCGGCCCCGTCTCCACCTCCTTCCCCCTCTCCGACTTCGCCCACAGCCCGCACTGCCGCGGTTACGACCACCTCCCCGCCGCCGCCGCCGCCGCCGCTGCCGCCTTGTGATTGGGTAGAGATGGGTAGTTCATTAATTAATCTGGGTGATTTGGCTGGGGTAATTACGTGTAATTAATCACAGGTGCTCCTGGTTGATTGGCTATTGATGCGAATGGAATTTACGCCAAAAAAAAAAA] [+] EMBL CF291206 [CTAGCTTCTACATCGGCCCCGTCTCCACCTCCTTCCCCCTCTCCGACTTCGCCCACAGCCCGCACTGCCGCGGTTACGACCACCTCCCCGCCGCCGCCGCCGCCGCCGCTGCCGCCTTGTGATTGGGTAGAGATGGGTAGTTCATTAATTAATCTGGGTGATTTGGCTGGGGTAATTACGTGTAATTAATCACAGGTGCTCCTGGTTGATTGGCTATTGATGCGAATGGAATTTACGCCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4943#0 ATCAAAATCAACCCACGAGCTCTTCCTCCCACCTCCATGGCCGCCACCCACCCCCTCCTC 60 consensus_4943#2 ------------------------------------------------------------ consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 CTCCTCCTCCTCGCCGCCGCCGCCGTCGTCGTCCTCGTCGTAGCGGCGACACCGGCGGCG 120 consensus_4943#2 ------------------------------------------------------------ consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 GCGAGCGGCAGCGGGACGTCGACGCCGACGGCGTACGAGATGCTGGAGAGGTACGACTTC 180 consensus_4943#2 ------------------------------------------------------------ consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 CCGCGGGGATCCTGCCGGTGGGGGTGGAGGGGTACGAGCTCCGGGAGGACGGGAGCTTCG 240 consensus_4943#2 ------------------------------------------------------------ consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 AGGTGTACTTCCCGCGGGACTGCGAGTTCATGCTGGCGAGGACGTGGCTGGTCCGGTACG 300 consensus_4943#2 ------------------------------------------------------------ consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 GCGCCCGCATCGCCGGCGCCGCCGCCTCCGGCCGGCTCACGTCGCTCCAGGGCGTCTACG 360 consensus_4943#2 ------------------------------------------------------------ consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 TCAAGGTGCTCTTCGTCTGGCTCCCCGTCGGCGAGGTCGACCGCTCCGGCGACACTCTCA 420 consensus_4943#2 ---------------------------------------------------------CTA 3 consensus_4943#1 ---------------------------TCGGCGAGGTCGACCGCTCCGGCGACACTCTCA 33 * consensus_4943#0 GCTTCTACATCGGCCCCGTCTCCACCTCCTTCCCCCTCTCCGACTTCGCCCACAGCCCGC 480 consensus_4943#2 GCTTCTACATCGGCCCCGTCTCCACCTCCTTCCCCCTCTCCGACTTCGCCCACAGCCCGC 63 consensus_4943#1 GCTTTTACATCGGCCCCGTCTCCACCTCCTTCCCCCTCTCCGACTTCGCCCACAGCCCGC 93 **** ******************************************************* consensus_4943#0 ACTGCCGCGGTTACGACCACCTCCCCGCCGCCGCCGCCGCCGCCGCTGCCGCCTTGTGAT 540 consensus_4943#2 ACTGCCGCGGTTACGACCACCTCCCCGCCGCCGCCGCCGCCGCCGCTGCCGCCTTGTGAT 123 consensus_4943#1 ACTGCCGCGGTTACGACCCCCTCCCCGCCGCCGCCGCCGCCGCCGCTGCCGCCTTGTGAT 153 ****************** ***************************************** consensus_4943#0 TGGGTAGAGATGGGTAGTTCATTAATTAATCTGGGTGATTTGGCTGGGGTAATTACGTGT 600 consensus_4943#2 TGGGTAGAGATGGGTAGTTCATTAATTAATCTGGGTGATTTGGCTGGGGTAATTACGTGT 183 consensus_4943#1 TGGGTAGAGATGGGTAGTTCATTAATTAATCTGGGTGATTTGGCTGGGGTCATTACGTGT 213 ************************************************** ********* consensus_4943#0 AATTAATCACA-GGTGCTCCTGGTTGATTGGCTATTGATGCGAATGGAATTTACGCCACT 659 consensus_4943#2 AATTAATCACA-GGTGCTCCTGGTTGATTGGCTATTGATGCGAATGGAATTTACGCCAAA 242 consensus_4943#1 AATTAATCACACGGTGCTCCTGGTTGATTGGCTATTGATGCGAATGGAATTTACCCCCCT 273 *********** ****************************************** ** consensus_4943#0 ATGGGATTTATTTTGAGTATATCATTTGGTGGCTTCTTTATGAACAAGTGTTGGATGCAG 719 consensus_4943#2 AAAAAAAA---------------------------------------------------- 250 consensus_4943#1 ATGGGATTTATTTTGAGTATATCATTTGGTGGCTTCTTTNAAAAAAAAAAAAAAAAAAAA 333 * * consensus_4943#0 ATGCTG-------------------------- 725 consensus_4943#2 -------------------------------- consensus_4943#1 AAAAAAAAAAAAAAAAACCANCAAAAAAAAAA 365 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||