Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4944 cluster # 4944       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4944#0 length = 2559 sequences # 2  
consensus_4944#1 length = 614 sequences # 1  

consensusID : consensus_4944#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2559
fasta sequence
                              [GCGTACGGGTCTCAGGAGGAAGGAGATGAAGAGGACTGGGGCCAAGAAGATGTGGGCAATGCTGCTGTCAAGGTTATGTGTCGTATATGCTTTTCGGGAGAAAATGAGGGTAGTACAAAAGCTGCCAAAATGCTTCCATGCAAACTCTGCAACAAAAAGTATCATAGAAGTTGTTTGAAAAACTGGGGGGAACATAGAGATCTTTTCCATTGGAGCTCATGGGTCTGCCCCTCTTGCCGCAGTTGTGAGGTATGTCGACGACCTGGTGATCCCAACAAGTTAATGTTCTGTAAAAGGTGTGATGGTGCTTATCACTGCTACTGTCAGCAACCGTCGCACAAGAATGTTACCCATGGACCATACTTATGTCCAAAACATACAAGGTGTCACAGTTGTGGATCTGGTGTACCTGGGAGTGGCCATAGCACAAGGTGGTTTCTGGGTTACACATGCTGTGATGCTTGTGGACGATTATTTGTGAAAGGAAACTACTGTCCAGTTTGCTTGAAGGTTTATAGAGATTCTGAAGTGATACCAATGGTTTGTTGTGATGTTTGTGAAAAGTGGGTACATATTGAGTGTGATGGCATCAGCGAGGAAAAATACCAGCAATTTCAATCGGACCAAAACCTTCAGTACACATGTGGAGCATGCCGTGGCGAATGCTCCCAGATTAGGGACACAGAAGATGCTGTTAGGGAGCTTTGGAAGAGGCGGGATGTAGTTGATCATGACCTTATGGCTAGTTTAAGGGCTGCTGCTGCACTGCCTTCTTTGGAAGATGTCTCACCATCTCATCCTAACTCAGATGATGAAAAACTTGGTGCATATGTAATGAAAAATGATGGTAGAAACACACTCAAATTCTCTTTCAAAAGCAACAGTACTAAGCCTGCATTAGATTCATCTGAACAAGAGAAGAATGCTATCAAGAGCTCAGGGTCAAATAAGAAGCATTCCAAGAAGAAAGGGAATCAAAATAATAAAACAGTTAGCGAGCAGGATGAGATATTTTTGGAGAAAAGGAATGAAACTAAATCATTGGGTAGTTTGGGAGATCAAATTGCAGATGTTACTCGTGATAAGAGTTCATTTAAAAATGATGCCGATGCGTTTGTGCTGTCTTCAGCTCAAAGTGCAGAGAAGGCTTTGAAATTACAATCTGCCAAAGCTGCAGCACATAATGCTGATATGATACCCAAAGTCAAGATTAAAGGAACTAAGGTTCCGAGTTTGCATTTCAAGGATGTAGGCGAGGAAAATGCTGCCAAGAGTGACACAGGGAAAGGTACCAAGTTGGTTATTCATATCGGTTCACGACACAAAAGTAGGAGTGGCTCTCCCAAGTCTGAAATGTCCAATTCTCAGAAAGAGCAAGAGCTGGTTTCAATGCATGGAGGGAAAGTTGATGTGACAAGCCAGTTCAAAAGCTCTAGAAGTGAAATAAAAGAAAAAAGTGTAATGAAGCTAGTTAGAGAGACTGGAGTACAACAAAATAGCCTTCTAGGAGATCTAGGTGCTTCAAAAAAGCATGCAACCGGAAAAAGGAGCAATGCTATAGTTTCTGCAATGGAAAATGCAAGTGAAAGTGGTACCAGAAGCAGATCGTTTGGACAAAAACAATCTGTTAATCATCTGACTGAGAACCAGGGGAATGCTTCATTTTCTGTGAACAACTCTCCTGACAGCTTGAAGCCATCATTGCTCAAGCTTAAATTTAAACGTCCAATTTTTGAGCAGCCAAGCACTCAGTCTTCTCAACCAGAGGAGCCGGGCACCTGGGCTTCACCGCAAGAGGAGTTAAATGTTGCTAAAGGCCAGAGATCAAAGAGGAAGAGACCTTCATTAGACAAGATGGATGGTTCGGAAAGTAAGGCTCCAGCTGCCAAGAGACATGAGCAGAGCACAGGAGAAGAAGCAATGGATGCGAACTGGATCCTGCGCAAGTTGGGCAAGGATGCGATTGGGAAGAGGATTGAGGTCCAGCTAGCTTCTGATGGCAAATGGCATCAGGGGGTAGTCTCGAATGTAATCAATGGCACTTTGTGCCTTCAGTTAGATAATGGTAGGTCTGAGAACATAGAGCTGGGAAAGCGGGCAATCCGCTTGATAGCACAAAGGTCAAAGAGCGGAAAGCGATGAACCCATTTTGCGCCTGCCTCCCTGTTCTTGCTCTCAGTCAACTTCCTGCCACCAGGGTAGTAAGCAGACCTCTCCAGGCTCCAGCATTTGGATCGTCGCAGTCTCTGATTCATGGGAGATTGGGAGGTCTGAAGGTCTGCCGTTCTTGCTGCCTTAAGCTGACTGGATGAGACGTAGAAATGCAACATCATCCGTTGCGCGGTGTCTCACTAGCCTAGCATGTAACAGACTAGTTTTTTTTTTTGTCCTGCTGCATGAAGCGCATTGGCTTCATTTTGACTTCTGGTAGTGTAGGAACAAACAACTGGGAAGGCTTTTTAGGGGCCACCCTGGATGTAGAAGAAATGCCTGATGATGGCCATGTACATGTAGCTGTAGCTGCTGAATGAGTTCTTTTTTTTAACCAGTTTACCCAGA]

[+] EMBL AK102102             [GCGTACGGGTCTCAGGAGGAAGGAGATGAAGAGGACTGGGGCCAAGAAGATGTGGGCAATGCTGCTGTCAAGGTTATGTGTCGTATATGCTTTTCGGGAGAAAATGAGGGTAGTACAAAAGCTGCCAAAATGCTTCCATGCAAACTCTGCAACAAAAAGTATCATAGAAGTTGTTTGAAAAACTGGGGGGAACATAGAGATCTTTTCCATTGGAGCTCATGGGTCTGCCCCTCTTGCCGCAGTTGTGAGGTATGTCGACGACCTGGTGATCCCAACAAGTTAATGTTCTGTAAAAGGTGTGATGGTGCTTATCACTGCTACTGTCAGCAACCGTCGCACAAGAATGTTACCCATGGACCATACTTATGTCCAAAACATACAAGGTGTCACAGTTGTGGATCTGGTGTACCTGGGAGTGGCCATAGCACAAGGTGGTTTCTGGGTTACACATGCTGTGATGCTTGTGGACGATTATTTGTGAAAGGAAACTACTGTCCAGTTTGCTTGAAGGTTTATAGAGATTCTGAAGTGATACCAATGGTTTGTTGTGATGTTTGTGAAAAGTGGGTACATATTGAGTGTGATGGCATCAGCGAGGAAAAATACCAGCAATTTCAATCGGACCAAAACCTTCAGTACACATGTGGAGCATGCCGTGGCGAATGCTCCCAGATTAGGGACACAGAAGATGCTGTTAGGGAGCTTTGGAAGAGGCGGGATGTAGTTGATCATGACCTTATGGCTAGTTTAAGGGCTGCTGCTGCACTGCCTTCTTTGGAAGATGTCTCACCATCTCATCCTAACTCAGATGATGAAAAACTTGGTGCATATGTAATGAAAAATGATGGTAGAAACACACTCAAATTCTCTTTCAAAAGCAACAGTACTAAGCCTGCATTAGATTCATCTGAACAAGAGAAGAATGCTATCAAGAGCTCAGGGTCAAATAAGAAGCATTCCAAGAAGAAAGGGAATCAAAATAATAAAACAGTTAGCGAGCAGGATGAGATATTTTTGGAGAAAAGGAATGAAACTAAATCATTGGGTAGTTTGGGAGATCAAATTGCAGATGTTACTCGTGATAAGAGTTCATTTAAAAATGATGCCGATGCGTTTGTGCTGTCTTCAGCTCAAAGTGCAGAGAAGGCTTTGAAATTACAATCTGCCAAAGCTGCAGCACATAATGCTGATATGATACCCAAAGTCAAGATTAAAGGAACTAAGGTTCCGAGTTTGCATTTCAAGGATGTAGGCGAGGAAAATGCTGCCAAGAGTGACACAGGGAAAGGTACCAAGTTGGTTATTCATATCGGTTCACGACACAAAAGTAGGAGTGGCTCTCCCAAGTCTGAAATGTCCAATTCTCAGAAAGAGCAAGAGCTGGTTTCAATGCATGGAGGGAAAGTTGATGTGACAAGCCAGTTCAAAAGCTCTAGAAGTGAAATAAAAGAAAAAAGTGTAATGAAGCTAGTTAGAGAGACTGGAGTACAACAAAATAGCCTTCTAGGAGATCTAGGTGCTTCAAAAAAGCATGCAACCGGAAAAAGGAGCAATGCTATAGTTTCTGCAATGGAAAATGCAAGTGAAAGTGGTACCAGAAGCAGATCGTTTGGACAAAAACAATCTGTTAATCATCTGACTGAGAACCAGGGGAATGCTTCATTTTCTGTGAACAACTCTCCTGACAGCTTGAAGCCATCATTGCTCAAGCTTAAATTTAAACGTCCAATTTTTGAGCAGCCAAGCACTCAGTCTTCTCAACCAGAGGAGCCGGGCACCTGGGCTTCACCGCAAGAGGAGTTAAATGTTGCTAAAGGCCAGAGATCAAAGAGGAAGAGACCTTCATTAGACAAGATGGATGGTTCGGAAAGTAAGGCTCCAGCTGCCAAGAGACATGAGCAGAGCACAGGAGAAGAAGCAATGGATGCGAACTGGATCCTGCGCAAGTTGGGCAAGGATGCGATTGGGAAGAGGATTGAGGTCCAGCTAGCTTCTGATGGCAAATGGCATCAGGGGGTAGTCTCGAATGTAATCAATGGCACTTTGTGCCTTCAGTTAGATAATGGTAGGTCTGAGAACATAGAGCTGGGAAAGCGGGCAATCCGCTTGATAGCACAAAGGTCAAAGAGCGGAAAGCGATGAACCCATTTTGCGCCTGCCTCCCTGTTCTTGCTCTCAGTCAACTTCCTGCCACCAGGGTAGTAAGCAGACCTCTCCAGGCTCCAGCATTTGGATCGTCGCAGTCTCTGATTCATGGGAGATTGGGAGGTCTGAAGGTCTGCCGTTCTTGCTGCCTTAAGCTGACTGGATGAGACGTAGAAATGCAACATCATCCGTTGCGCGGTGTCTCACTAGCCTAGCATGTAACAGACTAGTTTTTTTTTTTGTCCTGCTGCATGAAGCGCATTGGCTTCATTTTGACTTCTGGTAGTGTAGGAACAAACAACTGGGAAGGCTTTTTAGGGGCCACCCTGGATGTAGAAGAAATGCCTGATGATGGCCATGTACATGTAGCTGTAGCTGCTGAATGAGTTCTT                      ]
[+] EMBL AK106543             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TAATGAAAAATGATGGTAGAAACACACTCAAATTCTCTTTCAAAAGCAACAGTACTAAGCCTGCATTAGATTCATCTGAACAAGAGAAGAATGCTATCAAGAGCTCAGGGTCAAATAAGAAGCATTCCATGAAGAAAGGGAATCAAAATAATAAAACAGTTAGCGAGCAGGATGAGATATTTTTGGAGAAAAGGAATGAAACTAAATCATTGGGTAGTTTGGGAGATCAAATTGCAGATGTTACTCGTGATAAGAGTTCATTTAAAAATGATGCCGATGCGTTTGTGCTGTCTTCAGCTCAAAGTGCAGAGAAGGCTTTGAAATTACAATCTGCCAAAGCTGCAGCACATAATGCTGATATGATACCCAAAGTCAAGATTAAAGGAACTAAGGTTCCGAGTTTGCATTTCAAGGATGTAGGCGAGGAAAATGCTGCCAAGAGTGACACAGGGAAAGGTACCAAGTTGGTTATTCATATCGGTTCACGACACAAAAGTAGGAGTGGCTCTCCCAAGTCTGAAATGTCCAATTCTCAGAAAGAGCAAGAGCTGGTTTCAATGCATGGAGGGAAAGTTGATGTGACAAGCCAGTTCAAAAGCTCTAGAAGTGAAATAAAAGAAAAAAGTGTAATGAAGCTAGTTAGAGAGACTGGAGTACAACAAAATAGCCTTCTAGGAGATCTAGGTGCTTCAAAAAAGCATGCAACCGGAAAAAGGAGCAATGCTATAGTTTCTGCAATGGAAAATGCAAGTGAAAGTGGTACCAGAAGCAGATCGTTTGGACAAAAACAATCTGTTAATCATCTGACTGAGAACCAGGGGAATGCTTCATTTTCTGTGAACAACTCTCCTGACAGCTTGAAGCCATCATTGCTCAAGCTTAAATTTAAACGTCCAATTTTTGAGCAGCCAAGCACTCAGTCTTCTCAACCAGAGGAGCCGGGCACCTGGGCTTCACCGCAAGAGGAGTTAAATGTTGCTAAAGGCCAGAGATCAAAGAGGAAGAGACCTTCATTAGACAAGATGGATGGTTCGGAAAGTAAGGCTCCAGCTGCCAAGAGACATGAGCAGAGCACAGGAGAAGAAGCAATGGATGCGAACTGGATCCTGCGCAAGTTGGGCAAGGATGCGATTGGGAAGAGGATTGAGGTCCAGCTAGCTTCTGATGGCAAATGGCATCAGGGGGTAGTCTCGAATGTAATCAATGGCACTTTGTGCCTTCAGTTAGATAATGGTAGGTCTGAGAACATAGAGCTGGGAAAGCGGGCAATCCGCTTGATAGCACAAAGGTCAAAGAGCGGAAAGCGATGAACCCATTTTGCGCCTGCCTCCCTGTTCTTGCTCTCAGTCAACTTCCTGCCACCAGGGTAGTAAGCAGACCTCTCCAGGCTCCAGCATTTGGATCGTCGCAGTCTCTGATTCATGGGAGATTGGGAGGTCTGAAGGTCTGCCGTTCTTGCTGCCTTAAGCTGACTGGATGAGACGTAGAAATGCAACATCATCCGTTGCGCGGTGTCTCACTAGCCTAGCATGTAACAGACTAGTTTTTTTTTTTGTCCTGCTGCATGAAGCGCATTGGCTTCATTTTGACTTCTGGTAGTGTAGGAACAAACAACTGGGAAGGCTTTTTAGGGGCCACCCTGGATGTAGAAGAAATGCCTGATGATGGCCATGTACATGTAGCTGTAGCTGCTGAATGAGTTCTTTTTTTTAACCAGTTTACCCAGA]


>consensus_4944#0 GCGTACGGGTCTCAGGAGGAAGGAGATGAAGAGGACTGGGGCCAAGAAGATGTGGGCAAT GCTGCTGTCAAGGTTATGTGTCGTATATGCTTTTCGGGAGAAAATGAGGGTAGTACAAAA GCTGCCAAAATGCTTCCATGCAAACTCTGCAACAAAAAGTATCATAGAAGTTGTTTGAAA AACTGGGGGGAACATAGAGATCTTTTCCATTGGAGCTCATGGGTCTGCCCCTCTTGCCGC AGTTGTGAGGTATGTCGACGACCTGGTGATCCCAACAAGTTAATGTTCTGTAAAAGGTGT GATGGTGCTTATCACTGCTACTGTCAGCAACCGTCGCACAAGAATGTTACCCATGGACCA TACTTATGTCCAAAACATACAAGGTGTCACAGTTGTGGATCTGGTGTACCTGGGAGTGGC CATAGCACAAGGTGGTTTCTGGGTTACACATGCTGTGATGCTTGTGGACGATTATTTGTG AAAGGAAACTACTGTCCAGTTTGCTTGAAGGTTTATAGAGATTCTGAAGTGATACCAATG GTTTGTTGTGATGTTTGTGAAAAGTGGGTACATATTGAGTGTGATGGCATCAGCGAGGAA AAATACCAGCAATTTCAATCGGACCAAAACCTTCAGTACACATGTGGAGCATGCCGTGGC GAATGCTCCCAGATTAGGGACACAGAAGATGCTGTTAGGGAGCTTTGGAAGAGGCGGGAT GTAGTTGATCATGACCTTATGGCTAGTTTAAGGGCTGCTGCTGCACTGCCTTCTTTGGAA GATGTCTCACCATCTCATCCTAACTCAGATGATGAAAAACTTGGTGCATATGTAATGAAA AATGATGGTAGAAACACACTCAAATTCTCTTTCAAAAGCAACAGTACTAAGCCTGCATTA GATTCATCTGAACAAGAGAAGAATGCTATCAAGAGCTCAGGGTCAAATAAGAAGCATTCC AAGAAGAAAGGGAATCAAAATAATAAAACAGTTAGCGAGCAGGATGAGATATTTTTGGAG AAAAGGAATGAAACTAAATCATTGGGTAGTTTGGGAGATCAAATTGCAGATGTTACTCGT GATAAGAGTTCATTTAAAAATGATGCCGATGCGTTTGTGCTGTCTTCAGCTCAAAGTGCA GAGAAGGCTTTGAAATTACAATCTGCCAAAGCTGCAGCACATAATGCTGATATGATACCC AAAGTCAAGATTAAAGGAACTAAGGTTCCGAGTTTGCATTTCAAGGATGTAGGCGAGGAA AATGCTGCCAAGAGTGACACAGGGAAAGGTACCAAGTTGGTTATTCATATCGGTTCACGA CACAAAAGTAGGAGTGGCTCTCCCAAGTCTGAAATGTCCAATTCTCAGAAAGAGCAAGAG CTGGTTTCAATGCATGGAGGGAAAGTTGATGTGACAAGCCAGTTCAAAAGCTCTAGAAGT GAAATAAAAGAAAAAAGTGTAATGAAGCTAGTTAGAGAGACTGGAGTACAACAAAATAGC CTTCTAGGAGATCTAGGTGCTTCAAAAAAGCATGCAACCGGAAAAAGGAGCAATGCTATA GTTTCTGCAATGGAAAATGCAAGTGAAAGTGGTACCAGAAGCAGATCGTTTGGACAAAAA CAATCTGTTAATCATCTGACTGAGAACCAGGGGAATGCTTCATTTTCTGTGAACAACTCT CCTGACAGCTTGAAGCCATCATTGCTCAAGCTTAAATTTAAACGTCCAATTTTTGAGCAG CCAAGCACTCAGTCTTCTCAACCAGAGGAGCCGGGCACCTGGGCTTCACCGCAAGAGGAG TTAAATGTTGCTAAAGGCCAGAGATCAAAGAGGAAGAGACCTTCATTAGACAAGATGGAT GGTTCGGAAAGTAAGGCTCCAGCTGCCAAGAGACATGAGCAGAGCACAGGAGAAGAAGCA ATGGATGCGAACTGGATCCTGCGCAAGTTGGGCAAGGATGCGATTGGGAAGAGGATTGAG GTCCAGCTAGCTTCTGATGGCAAATGGCATCAGGGGGTAGTCTCGAATGTAATCAATGGC ACTTTGTGCCTTCAGTTAGATAATGGTAGGTCTGAGAACATAGAGCTGGGAAAGCGGGCA ATCCGCTTGATAGCACAAAGGTCAAAGAGCGGAAAGCGATGAACCCATTTTGCGCCTGCC TCCCTGTTCTTGCTCTCAGTCAACTTCCTGCCACCAGGGTAGTAAGCAGACCTCTCCAGG CTCCAGCATTTGGATCGTCGCAGTCTCTGATTCATGGGAGATTGGGAGGTCTGAAGGTCT GCCGTTCTTGCTGCCTTAAGCTGACTGGATGAGACGTAGAAATGCAACATCATCCGTTGC GCGGTGTCTCACTAGCCTAGCATGTAACAGACTAGTTTTTTTTTTTGTCCTGCTGCATGA AGCGCATTGGCTTCATTTTGACTTCTGGTAGTGTAGGAACAAACAACTGGGAAGGCTTTT TAGGGGCCACCCTGGATGTAGAAGAAATGCCTGATGATGGCCATGTACATGTAGCTGTAG CTGCTGAATGAGTTCTTTTTTTTAACCAGTTTACCCAGA



consensusID : consensus_4944#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence
                              [CATCTGACTGAGAACAGGGGAATGCTTCATTTTCTGTGAACAACTCTCCTGACAGCTTGAAGCCATCATTGCTCAAGCTTAAATTTAAACGTCCAATTTTTGAGCAGCCAAGCACCAGTCTTCTCAACCAGAGGAGCCGGGCACCTGGGCTTCACCGCAAGAGGAGTTAAATGTTGCTAAAGGCCNGAGATCNAAGAGGAAGANACCTTCNTTAGACAANATGGATGGTTCGGAAAGTNAGGCTCCNGCTGCCAAGAGACTGAGCAGAGCACAGGAGAAGAANCAATGGATGCGAACTGGATCCTGCGCCAGTTGGGCCAGGATGCGATTGGGAAGAAGATTGANGTCCANCTANCTTCTGATGGCAAATGGCATCNGGGGGTNGTCTCNAATGTNATCAATGGCACTTTGTGCCTTCAGTTAGATAATGGTAGGTCTGANAACATANAACTGGGAAAGCGGGCNATCCGCTTGATNACACNAANGTCTNANANCGGAAAGCGATNAACCCATTTTGCGCCTGCCCTCCCTGTTCTTGCTCTCANTCNACTTCCTGCCCCCAGGGTTGTTANCANAACTCTCCCANGCTCCACATTTGGATCGTCCCNTCTCTG]

[+] EMBL BE229713             [CATCTGACTGAGAACAGGGGAATGCTTCATTTTCTGTGAACAACTCTCCTGACAGCTTGAAGCCATCATTGCTCAAGCTTAAATTTAAACGTCCAATTTTTGAGCAGCCAAGCACCAGTCTTCTCAACCAGAGGAGCCGGGCACCTGGGCTTCACCGCAAGAGGAGTTAAATGTTGCTAAAGGCCNGAGATCNAAGAGGAAGANACCTTCNTTAGACAANATGGATGGTTCGGAAAGTNAGGCTCCNGCTGCCAAGAGACTGAGCAGAGCACAGGAGAAGAANCAATGGATGCGAACTGGATCCTGCGCCAGTTGGGCCAGGATGCGATTGGGAAGAAGATTGANGTCCANCTANCTTCTGATGGCAAATGGCATCNGGGGGTNGTCTCNAATGTNATCAATGGCACTTTGTGCCTTCAGTTAGATAATGGTAGGTCTGANAACATANAACTGGGAAAGCGGGCNATCCGCTTGATNACACNAANGTCTNANANCGGAAAGCGATNAACCCATTTTGCGCCTGCCCTCCCTGTTCTTGCTCTCANTCNACTTCCTGCCCCCAGGGTTGTTANCANAACTCTCCCANGCTCCACATTTGGATCGTCCCNTCTCTG]


>consensus_4944#1 CATCTGACTGAGAACAGGGGAATGCTTCATTTTCTGTGAACAACTCTCCTGACAGCTTGA AGCCATCATTGCTCAAGCTTAAATTTAAACGTCCAATTTTTGAGCAGCCAAGCACCAGTC TTCTCAACCAGAGGAGCCGGGCACCTGGGCTTCACCGCAAGAGGAGTTAAATGTTGCTAA AGGCCNGAGATCNAAGAGGAAGANACCTTCNTTAGACAANATGGATGGTTCGGAAAGTNA GGCTCCNGCTGCCAAGAGACTGAGCAGAGCACAGGAGAAGAANCAATGGATGCGAACTGG ATCCTGCGCCAGTTGGGCCAGGATGCGATTGGGAAGAAGATTGANGTCCANCTANCTTCT GATGGCAAATGGCATCNGGGGGTNGTCTCNAATGTNATCAATGGCACTTTGTGCCTTCAG TTAGATAATGGTAGGTCTGANAACATANAACTGGGAAAGCGGGCNATCCGCTTGATNACA CNAANGTCTNANANCGGAAAGCGATNAACCCATTTTGCGCCTGCCCTCCCTGTTCTTGCT CTCANTCNACTTCCTGCCCCCAGGGTTGTTANCANAACTCTCCCANGCTCCACATTTGGA TCGTCCCNTCTCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4944#0      GCGTACGGGTCTCAGGAGGAAGGAGATGAAGAGGACTGGGGCCAAGAAGATGTGGGCAAT 60
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GCTGCTGTCAAGGTTATGTGTCGTATATGCTTTTCGGGAGAAAATGAGGGTAGTACAAAA 120
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GCTGCCAAAATGCTTCCATGCAAACTCTGCAACAAAAAGTATCATAGAAGTTGTTTGAAA 180
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      AACTGGGGGGAACATAGAGATCTTTTCCATTGGAGCTCATGGGTCTGCCCCTCTTGCCGC 240
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      AGTTGTGAGGTATGTCGACGACCTGGTGATCCCAACAAGTTAATGTTCTGTAAAAGGTGT 300
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GATGGTGCTTATCACTGCTACTGTCAGCAACCGTCGCACAAGAATGTTACCCATGGACCA 360
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      TACTTATGTCCAAAACATACAAGGTGTCACAGTTGTGGATCTGGTGTACCTGGGAGTGGC 420
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      CATAGCACAAGGTGGTTTCTGGGTTACACATGCTGTGATGCTTGTGGACGATTATTTGTG 480
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      AAAGGAAACTACTGTCCAGTTTGCTTGAAGGTTTATAGAGATTCTGAAGTGATACCAATG 540
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GTTTGTTGTGATGTTTGTGAAAAGTGGGTACATATTGAGTGTGATGGCATCAGCGAGGAA 600
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      AAATACCAGCAATTTCAATCGGACCAAAACCTTCAGTACACATGTGGAGCATGCCGTGGC 660
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GAATGCTCCCAGATTAGGGACACAGAAGATGCTGTTAGGGAGCTTTGGAAGAGGCGGGAT 720
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GTAGTTGATCATGACCTTATGGCTAGTTTAAGGGCTGCTGCTGCACTGCCTTCTTTGGAA 780
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GATGTCTCACCATCTCATCCTAACTCAGATGATGAAAAACTTGGTGCATATGTAATGAAA 840
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      AATGATGGTAGAAACACACTCAAATTCTCTTTCAAAAGCAACAGTACTAAGCCTGCATTA 900
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GATTCATCTGAACAAGAGAAGAATGCTATCAAGAGCTCAGGGTCAAATAAGAAGCATTCC 960
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      AAGAAGAAAGGGAATCAAAATAATAAAACAGTTAGCGAGCAGGATGAGATATTTTTGGAG 1020
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      AAAAGGAATGAAACTAAATCATTGGGTAGTTTGGGAGATCAAATTGCAGATGTTACTCGT 1080
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GATAAGAGTTCATTTAAAAATGATGCCGATGCGTTTGTGCTGTCTTCAGCTCAAAGTGCA 1140
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GAGAAGGCTTTGAAATTACAATCTGCCAAAGCTGCAGCACATAATGCTGATATGATACCC 1200
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      AAAGTCAAGATTAAAGGAACTAAGGTTCCGAGTTTGCATTTCAAGGATGTAGGCGAGGAA 1260
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      AATGCTGCCAAGAGTGACACAGGGAAAGGTACCAAGTTGGTTATTCATATCGGTTCACGA 1320
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      CACAAAAGTAGGAGTGGCTCTCCCAAGTCTGAAATGTCCAATTCTCAGAAAGAGCAAGAG 1380
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      CTGGTTTCAATGCATGGAGGGAAAGTTGATGTGACAAGCCAGTTCAAAAGCTCTAGAAGT 1440
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GAAATAAAAGAAAAAAGTGTAATGAAGCTAGTTAGAGAGACTGGAGTACAACAAAATAGC 1500
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      CTTCTAGGAGATCTAGGTGCTTCAAAAAAGCATGCAACCGGAAAAAGGAGCAATGCTATA 1560
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GTTTCTGCAATGGAAAATGCAAGTGAAAGTGGTACCAGAAGCAGATCGTTTGGACAAAAA 1620
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      CAATCTGTTAATCATCTGACTGAGAACCAGGGGAATGCTTCATTTTCTGTGAACAACTCT 1680
consensus_4944#1      ------------CATCTGACTGAGAAC-AGGGGAATGCTTCATTTTCTGTGAACAACTCT 47
                                  *************** ********************************

consensus_4944#0      CCTGACAGCTTGAAGCCATCATTGCTCAAGCTTAAATTTAAACGTCCAATTTTTGAGCAG 1740
consensus_4944#1      CCTGACAGCTTGAAGCCATCATTGCTCAAGCTTAAATTTAAACGTCCAATTTTTGAGCAG 107
                      ************************************************************

consensus_4944#0      CCAAGCACTCAGTCTTCTCAACCAGAGGAGCCGGGCACCTGGGCTTCACCGCAAGAGGAG 1800
consensus_4944#1      CCAAGCAC-CAGTCTTCTCAACCAGAGGAGCCGGGCACCTGGGCTTCACCGCAAGAGGAG 166
                      ******** ***************************************************

consensus_4944#0      TTAAATGTTGCTAAAGGCCAGAGATCAAAGAGGAAGAGACCTTCATTAGACAAGATGGAT 1860
consensus_4944#1      TTAAATGTTGCTAAAGGCCNGAGATCNAAGAGGAAGANACCTTCNTTAGACAANATGGAT 226
                      ******************* ****** ********** ****** ******** ******

consensus_4944#0      GGTTCGGAAAGTAAGGCTCCAGCTGCCAAGAGACATGAGCAGAGCACAGGAGAAGAAGCA 1920
consensus_4944#1      GGTTCGGAAAGTNAGGCTCCNGCTGCCAAGAGAC-TGAGCAGAGCACAGGAGAAGAANCA 285
                      ************ ******* ************* ********************** **

consensus_4944#0      ATGGATGCGAACTGGATCCTGCGCAAGTTGGGCAAGGATGCGATTGGGAAGAGGATTGAG 1980
consensus_4944#1      ATGGATGCGAACTGGATCCTGCGCCAGTTGGGCCAGGATGCGATTGGGAAGAAGATTGAN 345
                      ************************ ******** ****************** ****** 

consensus_4944#0      GTCCAGCTAGCTTCTGATGGCAAATGGCATCAGGGGGTAGTCTCGAATGTAATCAATGGC 2040
consensus_4944#1      GTCCANCTANCTTCTGATGGCAAATGGCATCNGGGGGTNGTCTCNAATGTNATCAATGGC 405
                      ***** *** ********************* ****** ***** ***** *********

consensus_4944#0      ACTTTGTGCCTTCAGTTAGATAATGGTAGGTCTGAGAACATAGAGCTGGGAAAGCGGGCA 2100
consensus_4944#1      ACTTTGTGCCTTCAGTTAGATAATGGTAGGTCTGANAACATANAACTGGGAAAGCGGGCN 465
                      *********************************** ****** * ************** 

consensus_4944#0      ATCCGCTTGATAGCACAAAGGTCAAAGAGCGGAAAGCGATGAACCCATTTTGCGCCTGCC 2160
consensus_4944#1      ATCCGCTTGATNACACNAANGTCTNANANCGGAAAGCGATNAACCCATTTTGCGCCTGCC 525
                      ***********  *** ** ***  * * *********** *******************

consensus_4944#0      -TCCCTGTTCTTGCTCTCAGTCAACTTCCTGCCACCAGGGTAGTAAGCAGACCTCTCC-A 2218
consensus_4944#1      CTCCCTGTTCTTGCTCTCANTCNACTTCCTGCCCCCAGGGTTGTTANCANAACTCTCCCA 585
                       ****************** ** ********** ******* ** * ** * ****** *

consensus_4944#0      GGCTCCAGCATTTGGATCGTCGCAGTCTCTGATTCATGGGAGATTGGGAGGTCTGAAGGT 2278
consensus_4944#1      NGCTCCA-CATTTGGATCGTCCCN-TCTCTG----------------------------- 614
                       ****** ************* *  ******                             

consensus_4944#0      CTGCCGTTCTTGCTGCCTTAAGCTGACTGGATGAGACGTAGAAATGCAACATCATCCGTT 2338
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GCGCGGTGTCTCACTAGCCTAGCATGTAACAGACTAGTTTTTTTTTTTGTCCTGCTGCAT 2398
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      GAAGCGCATTGGCTTCATTTTGACTTCTGGTAGTGTAGGAACAAACAACTGGGAAGGCTT 2458
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      TTTAGGGGCCACCCTGGATGTAGAAGAAATGCCTGATGATGGCCATGTACATGTAGCTGT 2518
consensus_4944#1      ------------------------------------------------------------
                                                                                  

consensus_4944#0      AGCTGCTGAATGAGTTCTTTTTTTTAACCAGTTTACCCAGA 2559
consensus_4944#1      -----------------------------------------
                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)