These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1877 fasta sequence [CCGTCTCGCCGGTCTCCATCTCCATCACCGGAGAACAGCGATGTCGGCGACCTACTGCTTCCGCCGCATACTTTTGCCTTTCACTCCTCGCGCCCAGTCAATCTCCCCATCTCCTCGGCCTCGGCAATAGTATCCTCGCGAGTTCGCCCGCCGGCGCCAATCTCCATCCCGCGAGCAGCCGTGCCGGCGTCCTGCTGCTTCCGCCCCCGGTTTCCCCCAAAAAGAAATATATTTGGTGCCCCTGGCATCCGGTAGATCGGCATGCCAGCGGCCTTGGTGGCGTGCAGCGGCAAGCGCCGGCGGCGGACGGCCACCACTCATGCTGCTCGGGACTCATCGTCGTGGGCTTTTCTGGCGGAGGATCTGGTGAGCCTGATAGGCTGGCGGGTGCTGGCTGGAGATGTGCGAGACTACATCTGCTTCCGCGCCGCGTGCCACCACTGGCGCTCCTGCACCGCCAGCCCGTGCGGCCGCGGCGTTGTGGACCCACGCTTCCACCCGCGGCGGTGGATGATGCTCCCTGAGGGGAACGGTCTCTACCCGGGCCACGGCATGCTGCGTGGCTTCGTTCGCTTCTTCAACCTCTCCACCGGCGCTTTCGTCCGTCTCAAGCTGCCCATCGTCCGCGACCACCGCATCCTTGACTCCGTCGACGGAATCCTCCTCCTGCAGCGGAACCGTGACACCGCGGTCCGTCTTCTCCACCCCTTCACCGGCGACATCGTCGACTTCCCGCCGCTGGACACCTTGCTGCCGTACATGGGCCGCCGGTCGGAGGAATATCTCAGAGATGTCGCTGCTGCCTCCATAACATCATCAGCTGATGATCAAGCCGTCTTGCTTATGATATGGTTATTCCGCACGGTGCGCGTAGCCTTCGCCGCCTCTGGGGATAAGCAGTGGAGGGTGTCGAGCTGGTCCATGTACCAAGCCTATACTCCATTGCCATTCCAAGGCAAGCTATACATATTGGATCAAGCCACGGCTTATGGTGGACCTGAGGTCTTGCAGATAGACCCACCCCTGCAACTGCAACTGGAAGGGACGACGGAGCTCTCGCTACCACCACCAAAATCAATTGCTAAATGTCCAGCAAGGACACCTGACTCATTCTTTCTCTACCATTTGGTAGAATGTGACTCTGACATTCTGTTGGTCACCTTTGGTGTTAGTGTGTATGCACAAATTTCAGTTTACAGACTAGCTGATCTTATTTCGGGAACAACTGTCCCGGTGACTTGCATCGGCAGCAATTCCCTTTTCCTTGGTAATAGGAATCTCTGTGTCAGCTCCAAGGCGTTTCCTACCATTGTGGGTGATGCCATTGTGTTTTACCATCAGAAGGAGAATTATCTTGCACAATACCACCTCAGAAGCGGCACATTGTCACCCACATCAGATGGATGTATCTTTGCGACTAATATGCCAAGTCCTAGTAGCATCATTCACCATATCTACACCTGTTGCTTTCGTACACAATGGACCAAGGGACATTTATTGTTTCAAAGGGAGAACAGGGCATGGCAGATGAAACGGAAGTAGGGATAGACGGGGCGTAAACAACTCTTGTTTTGTGTTGGTGGTGGTGCCTGCCTGCCTGGTTTTCCTTCAGGGATATATTTGTTGATCTACAGGGGAAGTAGTTCCCGGGGGCTGTGAAAGTTTTGCTTTGGTACTTATAATCATGTTACTATTTATGTGACAAAGATGCTTCCCTCTGTTGTTGAATCAGGCAACTGTTTCATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTATGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCATCATCATAGTAGAATTCTAATATATCCTTA] [+] EMBL AK103677 [CCGTCTCGCCGGTCTCCATCTCCATCACCGGAGAACAGCGATGTCGGCGACCTACTGCTTCCGCCGCATACTTTTGCCTTTCACTCCTCGCGCCCAGTCAATCTCCCCATCTCCTCGGCCTCGGCAATAGTATCCTCGCGAGTTCGCCCGCCGGCGCCAATCTCCATCCCGCGAGCAGCCGTGCCGGCGTCCTGCTGCTTCCGCCCCCGGTTTCCCCCAAAAAGAAATATATTTGGTGCCCCTGGCATCCGGTAGATCGGCATGCCAGCGGCCTTGGTGGCGTGCAGCGGCAAGCGCCGGCGGCGGACGGCCACCACTCATGCTGCTCGGGACTCATCGTCGTGGGCTTTTCTGGCGGAGGATCTGGTGAGCCTGATAGGCTGGCGGGTGCTGGCTGGAGATGTGCGAGACTACATCTGCTTCCGCGCCGCGTGCCACCACTGGCGCTCCTGCACCGCCAGCCCGTGCGGCCGCGGCGTTGTGGACCCACGCTTCCACCCGCGGCGGTGGATGATGCTCCCTGAGGGGAACGGTCTCTACCCGGGCCACGGCATGCTGCGTGGCTTCGTTCGCTTCTTCAACCTCTCCACCGGCGCTTTCGTCCGTCTCAAGCTGCCCATCGTCCGCGACCACCGCATCCTTGACTCCGTCGACGGAATCCTCCTCCTGCAGCGGAACCGTGACACCGCGGTCCGTCTTCTCCACCCCTTCACCGGCGACATCGTCGACTTCCCGCCGCTGGACACCTTGCTGCCGTACATGGGCCGCCGGTCGGAGGAATATCTCAGAGATGTCGCTGCTGCCTCCATAACATCATCAGCTGATGATCAAGCCGTCTTGCTTATGATATGGTTATTCCGCACGGTGCGCGTAGCCTTCGCCGCCTCTGGGGATAAGCAGTGGAGGGTGTCGAGCTGGTCCATGTACCAAGCCTATACTCCATTGCCATTCCAAGGCAAGCTATACATATTGGATCAAGCCACGGCTTATGGTGGACCTGAGGTCTTGCAGATAGACCCACCCCTGCAACTGCAACTGGAAGGGACGACGGAGCTCTCGCTACCACCACCAAAATCAATTGCTAAATGTCCAGCAAGGACACCTGACTCATTCTTTCTCTACCATTTGGTAGAATGTGACTCTGACATTCTGTTGGTCACCTTTGGTGTTAGTGTGTATGCACAAATTTCAGTTTACAGACTAGCTGATCTTATTTCGGGAACAACTGTCCCGGTGACTTGCATCGGCAGCAATTCCCTTTTCCTTGGTAATAGGAATCTCTGTGTCAGCTCCAAGGCGTTTCCTACCATTGTGGGTGATGCCATTGTGTTTTACCATCAGAAGGAGAATTATCTTGCACAATACCACCTCAGAAGCGGCACATTGTCACCCACATCAGATGGATGTATCTTTGCGACTAATATGCCAAGTCCTAGTAGCATCATTCACCATATCTACACCTGTTGCTTTCGTACACAATGGACCAAGGGACATTTATTGTTTCAAAGGGAGAACAGGGCATGGCAGATGAAACGGAAGTAGGGATAGACGGGGCGTAAACAACTCTTGTTTTGTGTTGGTGGTGGTGCCTGCCTGCCTGGTTTTCCTTCAGGGATATATTTGTTGATCTACAGGGGAAGTAGTTCCCGGGGGCTGTGAAAGTTTTGCTTTGGTACTTATAATCATGTTACTATTTATGTGACAAAGATGCTTCCCTCTGTTGTTGAATCAGGCAACTGTTTCATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTATGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCA ] [+] EMBL AK106532 [ CGTCTCGCCGGTCTCCATCTCCATCACCGGAGAACAGCGATGTCGGCGACCTACTGCTTCCGCCGCATACTTTTGCCTTTCACTCCTCGCGCCCAGTCAATCTCCCCATCTCCTCGGCCTCGGCAATAGTATCCTCGCGAGTTCGCCCGCCGGCGCCAATCTCCATCCCGCGAGCAGCCGTGCCGGCGTCCTGCTGCTTCCGCCCCCGGTTTCCCCCAAAAAGAAATATATTTGGTGCCCCTGGCATCCGGTAGATCGGCATGCCAGCGGCCTTGGTGGCGTGCAGCGGCAAGCGCCGGCGGCGGACGGCCACCACTCATGCTGCTCGGGACTCATCGTCGTGGGCTTCCCTGGCGGAGGATCTGGTGAGCCTGATAGGCTGGCGGGTGCTGGCTGGAGATGTGCGAGACTACATCTGCTTCCGCGCCGCGTGCCACCACTGGCGCTCCTGCACCGCCAGCCCGTGCGGCCGCGGCGTTGTGGACCCACGCTTCCACCCGCGGCGGTGGATGATGCTCCCTGAGGGGAACGGTCTCTACCCGGGCCACGGCATGCTGCGTGGCTTCGTTCGCTTCTTCAACCTCTCCACCGGCGCTTTCGTCCGTCTCAAGCTGCCCATCGTCCGCGACCACCGCATCCTTGACTCCGTCGACGGAATCCTCCTCCTGCAGCGGAACCGTGACACCGCGGTCCGTCTTCTCCACCCCTTCACCGGCGACATCGTCGACTTCCCGCCGCTGGACACCTTGCTGCCGTACATGGGCCGCCGGTCGGAGGAATATCTCAGAGATGTCGCTGCTGCCTCCATAACATCATCAGCTGATGATCAAGCCGTCTTGCTTATGATATGGTTATTCCGCACGGTGCGCGTAGCCTTCGCCGCCTCTGGGGATAAGCAGTGGAGGGTGTCGAGCTGGTCCATGTACCAAGCCTATACTCCATTGCCATTCCAAGGCAAGCTATACATATTGGATCAAGCCACGGCTTATGGTGGACCTGAGGTCTTGCAGATAGACCCACCCCTGCAACTGCAACTGGAAGGGACGACGGAGCTCTCGCTACCACCACCAAAATCAATTGCTAAATGTCCAGCAAGGACACCTGACTCATTCTTTCTCTACCATTTGGTAGAATGTGACTCTGACATTCTGTTGGTCACCTTTGGTGTTAGTGTGTATGCACAAATTTCAGTTTACAGACTAGCTGATCTTATTTCGGGAACAACTGTCCCGGTGACTTGCATCGGCAGCAATTCCCTTTTCCTTGGTAATAGGAATCTCTGTGTCAGCTCCAAGGCGTTTCCTACCATTGTGGGTGATGCCATTGTGTTTTACCATCAGAAGGAGAATTATCTTGCACAATACCACCTCAGAAGCGGCACATTGTCACCCACATCAGATGGATGTATCTTTGCGACTAATATGCCAAGTCCTAGTAGCATCATTCACCATATCTACACCTGTTGCTTTCGTACACAATGGACCAAGGGACATTTATTGTTTCAAAGGGAGAACAGGGCATGGCAGATGAAACGGAAGTAGGGATAGACGGGGCGTAAACAACTCTTGTTTTGTGTTGGTGGTGGTGCCTGCCTGCCTGGTTTTCCTTCAGGGATATATTTGTTGATCTACAGGGGAAGTAGTTCCCGGTGGCTGTGAAAGTTTTGCTTTGGTACTTATAATCATGTTACTATTTATGTGACAAAGATGCTTCCCTCTGTTGTTGAATCAGGCAACTGTTTCATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTATGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCATCATCATAGTAGAATTCTAATATATCCTTA] consensusID : consensus_4946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence [CATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTATGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF332264 [CATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTATGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4946#0 CCGTCTCGCCGGTCTCCATCTCCATCACCGGAGAACAGCGATGTCGGCGACCTACTGCTT 60 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 CCGCCGCATACTTTTGCCTTTCACTCCTCGCGCCCAGTCAATCTCCCCATCTCCTCGGCC 120 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 TCGGCAATAGTATCCTCGCGAGTTCGCCCGCCGGCGCCAATCTCCATCCCGCGAGCAGCC 180 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 GTGCCGGCGTCCTGCTGCTTCCGCCCCCGGTTTCCCCCAAAAAGAAATATATTTGGTGCC 240 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 CCTGGCATCCGGTAGATCGGCATGCCAGCGGCCTTGGTGGCGTGCAGCGGCAAGCGCCGG 300 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 CGGCGGACGGCCACCACTCATGCTGCTCGGGACTCATCGTCGTGGGCTTTTCTGGCGGAG 360 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 GATCTGGTGAGCCTGATAGGCTGGCGGGTGCTGGCTGGAGATGTGCGAGACTACATCTGC 420 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 TTCCGCGCCGCGTGCCACCACTGGCGCTCCTGCACCGCCAGCCCGTGCGGCCGCGGCGTT 480 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 GTGGACCCACGCTTCCACCCGCGGCGGTGGATGATGCTCCCTGAGGGGAACGGTCTCTAC 540 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 CCGGGCCACGGCATGCTGCGTGGCTTCGTTCGCTTCTTCAACCTCTCCACCGGCGCTTTC 600 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 GTCCGTCTCAAGCTGCCCATCGTCCGCGACCACCGCATCCTTGACTCCGTCGACGGAATC 660 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 CTCCTCCTGCAGCGGAACCGTGACACCGCGGTCCGTCTTCTCCACCCCTTCACCGGCGAC 720 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 ATCGTCGACTTCCCGCCGCTGGACACCTTGCTGCCGTACATGGGCCGCCGGTCGGAGGAA 780 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 TATCTCAGAGATGTCGCTGCTGCCTCCATAACATCATCAGCTGATGATCAAGCCGTCTTG 840 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 CTTATGATATGGTTATTCCGCACGGTGCGCGTAGCCTTCGCCGCCTCTGGGGATAAGCAG 900 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 TGGAGGGTGTCGAGCTGGTCCATGTACCAAGCCTATACTCCATTGCCATTCCAAGGCAAG 960 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 CTATACATATTGGATCAAGCCACGGCTTATGGTGGACCTGAGGTCTTGCAGATAGACCCA 1020 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 CCCCTGCAACTGCAACTGGAAGGGACGACGGAGCTCTCGCTACCACCACCAAAATCAATT 1080 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 GCTAAATGTCCAGCAAGGACACCTGACTCATTCTTTCTCTACCATTTGGTAGAATGTGAC 1140 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 TCTGACATTCTGTTGGTCACCTTTGGTGTTAGTGTGTATGCACAAATTTCAGTTTACAGA 1200 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 CTAGCTGATCTTATTTCGGGAACAACTGTCCCGGTGACTTGCATCGGCAGCAATTCCCTT 1260 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 TTCCTTGGTAATAGGAATCTCTGTGTCAGCTCCAAGGCGTTTCCTACCATTGTGGGTGAT 1320 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 GCCATTGTGTTTTACCATCAGAAGGAGAATTATCTTGCACAATACCACCTCAGAAGCGGC 1380 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 ACATTGTCACCCACATCAGATGGATGTATCTTTGCGACTAATATGCCAAGTCCTAGTAGC 1440 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 ATCATTCACCATATCTACACCTGTTGCTTTCGTACACAATGGACCAAGGGACATTTATTG 1500 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 TTTCAAAGGGAGAACAGGGCATGGCAGATGAAACGGAAGTAGGGATAGACGGGGCGTAAA 1560 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 CAACTCTTGTTTTGTGTTGGTGGTGGTGCCTGCCTGCCTGGTTTTCCTTCAGGGATATAT 1620 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 TTGTTGATCTACAGGGGAAGTAGTTCCCGGGGGCTGTGAAAGTTTTGCTTTGGTACTTAT 1680 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 AATCATGTTACTATTTATGTGACAAAGATGCTTCCCTCTGTTGTTGAATCAGGCAACTGT 1740 consensus_4946#1 ------------------------------------------------------------ consensus_4946#0 TTCATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTA 1800 consensus_4946#1 --CATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTA 58 ********************************************************** consensus_4946#0 TGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCATCATCATAGTAGA 1860 consensus_4946#1 TGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCAAAAAAAAAAAAAA 118 *********************************************** * * * * * consensus_4946#0 ATTCTAATATATCCTTA----------------------------- 1877 consensus_4946#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 164 * ** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||