cluster # 4948

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Oryza sativa
cluster # 4948 cluster # 4948 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4948#0 length = 536 sequences # 3

consensusID : consensus_4948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 536
fasta sequence

                              [AGNCAGCGGCGGGCTTAGGGTTTTGTAGTGTCGACGATCCAAGGTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGACGCAGCCCAAGTCGGGGCTTCGTCGGCATCAACAAGGGCCACGTNGTCACCAAGCGCGANTGCCACCTCGNCCGTCCGACCGCAAGGGAAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGA-GTTGTGGGATTTGCTCCATATGAGAAACGAATCACTGAGCTTCTGAA-GTTGGAAAGGACAAGCGTGCACTGAAGGTCG-TAAGAGAAAG-TCGGTACCCACAAGAGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGTTGAGGTCTG-TGGTACTACTTACAAGAAGAAATAGAAGTTTCAAGTTGAAG-TCTTTTTTCAATCCTTATT-G--TA-ATTCATTTATATGGACCTATAGTAAGCTCTAGATCGAGGTGCTGTATTGCCGTTGAGAACATTGCAATGCTATTGAGGAGCATTGAAATTTTGGCAAAAAAAAA]

[+] EMBL C27416               [AGNCAGCGGCGGGCTTAGGGTTTTGTAGTGTCGACGATCCAAGGTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGACGCAGCCCAAGTCGGGGCTTCGTCGGCATCAACAAGGGCCACGTNGTCACCAAGCGCGANTGCCACCTCGNCCGTCCGACCGCAAGGGAAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGA GTTGTGGGATTTGCTCCATATGAGAAACGAATCACTGAGCTTCTGAA GTTGGAAAGGACAAGCGTGCACTGAAGGTCG TAAGAGAAAG TCGGTACCCACAAGAGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGTTGAGGTCTG TGGTACTACTTACAAGAAGAAATAGAAGTTTCAAGTTGAAG TCTTTTTTCAATCCTTATT G  TA ATTCATTTATATGGACCT                                                                                      ]
[+] EMBL AU100817             [                                                                                                                                                                                        TGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTGGGATTTGCTCCATATGAGAAACGAATCACTGAGCTTCTGAAGGTTGGAAAGGACAAGCGTGCACTGAAGGTCGCTAAGAGAAAGCTCGGTACCCACAAGAGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAGGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCTTTTTGCAATCCTTATT G  TA ATTCATTTATATGGACCTATAGTAAGCTCTAGATCGAGGTGCTGTATTGCCGTTGAGAACATTGCAATGCTATTGAGGAGCATTGAAATTTTGGCAAAAAAAAA]
[+] EMBL AA750422             [                                                                                                                                                                                                                                                                                                                                                                                                                                             aTTATTCGTTTACATTCATTTATATGGACCTATAGTAAGCTCTAGATCGAGGTGCTGTATTGCCGTTGAGAACATTGCAATGCTATTGAGGAGCATTGAAATTTTGGCAca      ]




>consensus_4948#0
AGNCAGCGGCGGGCTTAGGGTTTTGTAGTGTCGACGATCCAAGGTCCGAGGAGCGAGGAG
GAGATCCGCCATGGCGCCGACGCAGCCCAAGTCGGGGCTTCGTCGGCATCAACAAGGGCC
ACGTNGTCACCAAGCGCGANTGCCACCTCGNCCGTCCGACCGCAAGGGAAAAGTACCAAG
AGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGTTGTGGGATTTGCTCCATATGAGAAAC
GAATCACTGAGCTTCTGAAGTTGGAAAGGACAAGCGTGCACTGAAGGTCGTAAGAGAAAG
TCGGTACCCACAAGAGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGT
TGAGGTCTGTGGTACTACTTACAAGAAGAAATAGAAGTTTCAAGTTGAAGTCTTTTTTCA
ATCCTTATTGTAATTCATTTATATGGACCTATAGTAAGCTCTAGATCGAGGTGCTGTATT
GCCGTTGAGAACATTGCAATGCTATTGAGGAGCATTGAAATTTTGGCAAAAAAAAA

clustalw multiple alignements is not computed in this case