These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 972 fasta sequence [GTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTCAAATCTTACCTCCATCTCGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCCTATCGTCGTAGAAGCGGTGACTTTGAAAGATTATGCGGATTGGGTATCCAATCAATTAATCCTCCAAACCAACTAAACCGGGGAAGCTGAAGCGGAAATGCAATTCTCGGGTGAGGGAAGGGGGAAGCTCCAGGAAGGCTTCGCTCGCTCGCTCAAAAAGCTCTAACGCTCGTTTACGGGTGGAGTGCATAAGAAGCCCTTATTGAAGTAGGGCGAGGCCTTACTACACGAGCTCGTAAGTCAAGCACGGAACGAGCCTTGTCTACGAAGCTTCGCTTCATCATCTTGCTTGCTTCTGGCGAAGCTTAACGCACTATAACATAGGCATGCATGATGGTATGGTAGGGTCCAAAGATACTTTTAAGGCCGACCACTACATAGGAGCGATAGGAAGCCAAGCCGTCAAAAGGAAAGGCGAGCAGCCCTTATTGCAATAGCAAACGGCCTACTTATAGCCCTATTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAATGCTGGCAGCTTGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTGGAACCTTTCAAGATTTTGAGACGCTTGTAGCTGATTAGTGATTACCCCTTACCGTCGGTTTTGGGATTTGCCATCCGGTATGGAGTGCACGTGCAGCTTCATCAGATAGAGTCTCCTCGACTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCACTCATATTTATGAAATATTGTCAGCATTCAATGAATCTGTGTTAAACAGGTCATACTAACTAATCTTTAAACG] [+] EMBL AK108508 [GTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTCAAATCTTACCTCCATCTCGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCCTATCGTCGTAGAAGCGGTGACTTTGAAAGATTATGCGGATTGGGTATCCAATCAATTAATCCTCCAAACCAACTAAACCGGGGAAGCTGAAGCGGAAATGCAATTCTCGGGTGAGGGAAGGGGGAAGCTCCAGGAAGGCTTCGCTCGCTCGCTCAAAAAGCTCTAACGCTCGTTTACGGGTGGAGTGCATAAGAAGCCCTTATTGAAGTAGGGCGAGGCCTTACTACACGAGCTCGTAAGTCAAGCACGGAACGAGCCTTGTCTACGAAGCTTCGCTTCATCATCTTGCTTGCTTCTGGCGAAGCTTAACGCACTATAACATAGGCATGCATGATGGTATGGTAGGGTCCAAAGATACTTTTAAGGCCGACCACTACATAGGAGCGATAGGAAGCCAAGCCGTCAAAAGGAAAGGCGAGCAGCCCTTATTGCAATAGCAAACGGCCTACTTATAGCCCTATTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAATGCTGGCAGCTTGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTGGAACCTTTCAAGATTTTGAGACGCTTGTAGCTGATTAGTGATTACCCCTTACCGTCGGTTTTGGGATTTGCCATCCGGTATGGAGTGCACGTGCAGCTTCATCAGATAGAGTCTCCTCGACTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCACTCATATTTATGAAATATTGTCAGCATTCAATGAATCTGTGTTAAACAGGTCATACTAACTAATCTTTAAACG] consensusID : consensus_4960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence [TGCATTCTTTCAGTTGGTTTTTACCCCATTTCTCCATCTTGGTTATACCGGACCATTTTGTTTCATCCAGGTCCGGAACAAGGCTT-CTTATCTT-CTG-CAAGGT-GCGGTCTTG-AGAAGATC-TGCTGGCGGTGCTAGCTTACCCGTT--CAGTAATTT-GAACTTACT-GAACT-GGATCAAATGGTG-CTG-TTGA-CAGTATCTATA-TTTAAACTACTAGCACC-AAAACTGCATGGCAGGGCAAACTTTCAGGTTCTTATATTTGCTTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAAT-GCTGGCAGCTTGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTGGAACCTTTCAAGATTTTGAGACACTTGTAGCTGATTAGTGATTACCCCTTACCGTC-GTTTTGGGATTTCCCATCCGGTATGGAGTGCACGTGCAGCTTCATCAGAT--AGTCTCCTCGACTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCACTCATATTTATGAAATATTGTCAGCATTCAAAAAATCTGTGTTAAACAGGTCATACTAACTAATCTTTAAACGAGTCTATTACAAAAA] [+] EMBL BM420044 [TGCATTCTTTCAGTTGGTTTTTACCCCATTTCTCCATCTTGGTTATACCGGACCATTTTGTTTCATCCAGGTCCGGAACAAGGCTT CTTATCTT CTG CAAGGT GCGGTCTTG AGAAGATC TGCTGGCGGTGCTAGCTTACCCGTT CAGTAATTT GAACTTACT GAACT GGATCAAATGGTG CTG TTGA CAGTATCTATA TTTAAACTACTAGCACC AAAACTGCATGGCAGGGCAAACTTTCAGGTTCTTATATTTGCTTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAAT GCTGGCAGCTTGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTGGAACCTTTCAAGATTTTGAGACACTTGTAGCTGATTAGTGATTACCCCTTACCGTC GTTTTGGGATTTCCCATCCGGTATGGAGTGCACGTGCAGCTTCATCAGAT AGTCTCCTCGACTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCACTCATATTTATGAAATATTGTCAGCATTCAAAAAA ] [+] EMBL AU030536 [ CAGGGCTTCCTTNTCTTCCTGCCAAGTTCCCGGTCTTGAAGAAGATCTTGCTGCCGNTGCTAGCTTNCCCCTTTCCANTAATTTGGAACTTACTGGAACTGGGATCAAATGGTGCCTGTTTNACCAGTATCTATATTTTAAACTACTGGCACCAAAAACTGCATGGCNGGGCAAACTTTCAGGTTCTTATATTTGCTTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAATGGCTGGCAGCTTGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTGGANCCTTTCAAGATTTTGAGACACTTGTAGCTGATTAGTGATTACCCCTTACCGTCGGTTTTGGGATTTGCCATCCGGTATGGNGTGCACGTGCAGCTTCATCAGATAGAGTCTCCTCGACTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCACTCATATTTATGAAATATTGTCAGCATTCAATGAATCTGTGTTAAACAGGTCATACTAACTAATCTTTAAACGAGTCTATTACAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4960#0 GTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGT 60 consensus_4960#1 ------------------------------------------------------------ consensus_4960#0 TCAAATCTTACCTCCATCTCGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAG 120 consensus_4960#1 ------------------------------------------------------------ consensus_4960#0 ATTTGTGGAACTAATCATGCCTTTACGCCTATCGTCGTAGAAGCGGTGACTTTGAAAGAT 180 consensus_4960#1 ------------------------------------------------------------ consensus_4960#0 TATGCGGATTGGGTATCCAATCAATTAATCCTCCAAACCAACTAAACCGGGGAAGCTGAA 240 consensus_4960#1 ------------------------------------------------------------ consensus_4960#0 GCGGAAATGCAATTCTCGGGTGAGGGAAGGGGGAAGCTCCAGGAAGGCTTCGCTCGCTCG 300 consensus_4960#1 ------------------------------------------------------------ consensus_4960#0 CTCAAAAAGCTCTAACGCTCGTTTACGGGTGGAGTGCATAAGAAGCCCTTATTGAAGTAG 360 consensus_4960#1 ---------------TGCATTCTTTCAGTTGGTTTTTACCCCATTTCTCCATCTTGGTTA 45 ** ** * * *** * * * * ** ** consensus_4960#0 GGCGAGGCCTTACTACACGAGCTCGTAAGTCAAGCACGGAACGAGCCTTGTCTACGAAGC 420 consensus_4960#1 TACCGGACCATTTTGT-----TTCAT---CCAGGTCCGGAACAAGGCTTCTTATCTT--C 95 * * ** * * ** * ** * ****** ** *** * * * consensus_4960#0 TTCGCTTCATCATCTTGCTTGCTTCTGGCGAAGCTTAACGCACTATAACATAGGCATGCA 480 consensus_4960#1 TGCAAGGTGCGGTCTTGAGAAGATCTGCTGGCGGTGCTAGCTTACCCGTTCAGTAATTTG 155 * * ***** **** * * * ** ** ** consensus_4960#0 TGATGGTATGGTAGGGTCCAAAGATACTTTTAAGGCCGACCACTACATAGGAGCGATAGG 540 consensus_4960#1 AACTTACTGAACTGGATCAAATGGTGCTGTTGA---CAGTATCTATATTTAAACTACTAG 212 * ** ** ** * * ** ** * * *** ** * * * * consensus_4960#0 AAGCCAAGCCGTCAAAAGGAAAGGCGAGCAGCCCTTATTGCAATAGCAAACGGCCTACTT 600 consensus_4960#1 CACCAAAACTGC---ATGGCAGGGCAAAC--------TTTCAGG-----------TTCTT 250 * * ** * * * ** * *** * * ** ** * *** consensus_4960#0 ATAGCCCTATTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAATGCTGGCAGCT 660 consensus_4960#1 ATA-TTTGCTTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAATGCTGGCAGCT 309 *** *************************************************** consensus_4960#0 TGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTG 720 consensus_4960#1 TGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTG 369 ************************************************************ consensus_4960#0 GAACCTTTCAAGATTTTGAGACGCTTGTAGCTGATTAGTGATTACCCCTTACCGTCGGTT 780 consensus_4960#1 GAACCTTTCAAGATTTTGAGACACTTGTAGCTGATTAGTGATTACCCCTTACCGTCG-TT 428 ********************** ********************************** ** consensus_4960#0 TTGGGATTTGCCATCCGGTATGGAGTGCACGTGCAGCTTCATCAGATAGAGTCTCCTCGA 840 consensus_4960#1 TTGGGATTTCCCATCCGGTATGGAGTGCACGTGCAGCTTCATCAGATA--GTCTCCTCGA 486 ********* ************************************** ********** consensus_4960#0 CTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCAC 900 consensus_4960#1 CTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCAC 546 ************************************************************ consensus_4960#0 TCATATTTATGAAATATTGTCAGCATTCAATGAATCTGTGTTAAACAGGTCATACTAACT 960 consensus_4960#1 TCATATTTATGAAATATTGTCAGCATTCAAAAAATCTGTGTTAAACAGGTCATACTAACT 606 ****************************** **************************** consensus_4960#0 AATCTTTAAACG--------------- 972 consensus_4960#1 AATCTTTAAACGAGTCTATTACAAAAA 633 ************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||