These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4961#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 605 fasta sequence [TGCCTTACGCGGCGACTCCCTTCGGGATTCTGTCCCATCCTTCATCTACTGCCCGTGCCCGTGCCTCTTACTCCTCCTGCCGCTCCAAACTCTTCATTGGCGGTCTTTCTTACGATACAAATGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGTGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGTCAAGTTTGCCTCAGAAGATGAAGCTGCTGCAGCATTGCACAAGATGGGGGGTGAGGTGATTGATGGAAGGAACATAAGGGTACACTATGCAAACAGCGGATGATCTGGTGCCACTTCTTCTTGGAGGAGTAAGTGTCTTGTCTTGTGTCGGGGTGCATGGAGAGCTCAACTAAGGCATGTATTTGTAGATATGTAGTCTTTCGTTTTCATGGCTAGCAATATGCACCTCTGCATATGTGGGTTTCAATCTTGTCCCATCTCCCCAATACACAAGTCATTTGATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACAACTGGAATATATCAAAGCAAGCTTAATTTCCCCCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA757906 [TGCCTTACGCGGCGACTCCCTTCGGGATTCTGTCCCATCCTTCATCTACTGCCCGTGCCCGTGCCTCTTACTCCTCCTGCCGCTCCAAACTCTTCATTGGCGGTCTTTCTTACGATACAAATGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGTGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGTCAAGTTTGCCTCAGAAGATGAAGCTGCTGCAGCATTGCACAAGATGGGGGGTGAGGTGATTGATGGAAGGAACATAAGGGTACACTATGCAAACAGCGGATGATCTGGTGCCACTTCTTCTTGGAGGAGTAAGTGTCTTGTCTTGTGTCGGGGTGCATGGAGAGCTCAACTAAGGCATGTATTTGTAGATATGTAGTCTTTCGTTTTCATGGCTAGCAATATGCACCTCTGCATATGTGGGTTTCAATCTTGTCCCATCTCCCCAATACACAAGTCATTTGATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACAACTGGAATATATCAAAGCAAGCTTAATTTCCCCCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BU672810 [ CCTTACGCGGCGACTCCCTTCGGGATTCTGTCCCATCCTTCATCTACTGCCCGTGCCCGTGCCTCTTCCTCCTCCTGCCGCTCCAAACTCTTCATTGGCGGTCTTTCTTACGATACAAATGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGTGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGTCAAGTTTGCCTCAGAAGATGAAGCTGCTGCAGCATTGCACAAGATGGGGGGTGAGGTGATTGATGGAAGGAACATAAGGGTACACTATGCAAACAGCGGATGATCTGGTGCCACTTCTTCTTGGAGGAGTAAGTGTCTTGTCTTGTGTCGGGGTGCATGGAGAGCTCAACTAAGGCATGTATTTGTAGATATGTAGTCTTTCGTTTTCATGGCTAGCAATATGCACCTCTGCATATGTGGGTTTCAATCTTGTCCCATCTCCCCAATACACAAGTCATTTGATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACAACTGGAATATATCAAAGCAAG ] consensusID : consensus_4961#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [ATTGATTGCAAGTGGAACGTGAATATGGCCACCCCAGTGGAAACGGGAAATGCCTAATGGGTATGGGCTTGTGTGCAAGTTTGGCCTGCAGGAAAGATGGAATGCTGTGCTGCATGCATTGCACCACAGATGGGGGGTGTAGTGGTGTATTGGATGGGAAGGAACTATGAATGGGTGACACCTGATGCGCCAACACGCGGATGGATGCTGGGTGGCCACTTGCTTGTTGGGAGGAGTGAAGTGTGCTTGTGCTTGGTGTGCGGGGTGCATGGGAGAGCTGCAACTGAAGGGCATGTGATTTGTGAGATATGTGAGTGCTTTCGTTGTTGCAGGGCTAGCAATGATGCACCTGCTGGCATGATGTGGGGTGTTGCAATGCTGTGGTGCCCATGCTGCCCCAATGACACAAGTGCATGTTGATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACTTACTGGAATATATCTAAGCAAGCTTAA] [-] EMBL CB966208 [ATTGATTGCAAGTGGAACGTGAATATGGCCACCCCAGTGGAAACGGGAAATGCCTAATGGGTATGGGCTTGTGTGCAAGTTTGGCCTGCAGGAAAGATGGAATGCTGTGCTGCATGCATTGCACCACAGATGGGGGGTGTAGTGGTGTATTGGATGGGAAGGAACTATGAATGGGTGACACCTGATGCGCCAACACGCGGATGGATGCTGGGTGGCCACTTGCTTGTTGGGAGGAGTGAAGTGTGCTTGTGCTTGGTGTGCGGGGTGCATGGGAGAGCTGCAACTGAAGGGCATGTGATTTGTGAGATATGTGAGTGCTTTCGTTGTTGCAGGGCTAGCAATGATGCACCTGCTGGCATGATGTGGGGTGTTGCAATGCTGTGGTGCCCATGCTGCCCCAATGACACAAGTGCATGTTGATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACTTACTGGAATATATCTAAGCAAGCTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4961#0 TGCCTTACGCGGCGACTCCCTTCGGGATTCTGTCCCATCCTTCATCTACTGCCCGTGCCC 60 consensus_4961#1 ------------------------------------------------------------ consensus_4961#0 GTGCCTCTTACTCCTCCTGCCGCTCCAAACTCTTCATTGGCGGTCTTTCTTACGATACAA 120 consensus_4961#1 -------------------------------------------------ATTGATTGCAA 11 * * *** consensus_4961#0 ATGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGTGAAGG-TA 179 consensus_4961#1 GTGGAAC-GTGAATATGGCCACCCCAGTGGAAACGGGAAATGCCTAATGGGTATGGGCTT 70 ** ** * * ** * * ** ** ** ** * consensus_4961#0 ATATGCCACCCAG--TGACAGGGAAATCCAAAGGGTATGGCTTTGTCAAGTTTGCCTCAG 237 consensus_4961#1 GTGTGCAAGTTTGGCCTGCAGGAAAGATGGAATGCTGTG-CTGCATGCATTGCACCACAG 129 * *** * * **** ** ** * * ** ** * * * ** *** consensus_4961#0 AAGATGAAGCTGCTGCAGCATTGCACAAGATGGGGGGTGAGGTGATTGATGGAAGGAACA 297 consensus_4961#1 ATGGGGGG-----TGTAGTGGTGTATTGGATGGGAA--GGAACTATGAATGGGTGACACC 182 * * * ** ** ** * ****** * ** **** * ** consensus_4961#0 TAAGGGTACACTATGCAAACAGCGGATGATCTGGTGCCACTT-CTTCTTGG-AGGAGT-A 354 consensus_4961#1 TGATGCGCCAACACGCGGAT---GGATGCTGGGTGGCCACTTGCTTGTTGGGAGGAGTGA 239 * * * ** * ** * ***** * * ******* *** **** ****** * consensus_4961#0 AGTGT-CTTGTCTT--GTGT-CGGGGTGCATGG-AGAGCT-CAACTAA--GGCATGT-AT 405 consensus_4961#1 AGTGTGCTTGTGCTTGGTGTGCGGGGTGCATGGGAGAGCTGCAACTGAAGGGCATGTGAT 299 ***** ***** * **** ************ ****** ***** * ******* ** consensus_4961#0 TTGT-AGATATGT-AGT-CTTTCGTTTT--CATGGCTAGCAAT-ATGCACCTCT--GCAT 457 consensus_4961#1 TTGTGAGATATGTGAGTGCTTTCGTTGTTGCAGGGCTAGCAATGATGCACCTGCTGGCAT 359 **** ******** *** ******** * ** ********** ******** **** consensus_4961#0 -ATGTGGG---TTTCAATCTTGT----CCCATCT--CCCCAAT-ACACAAGT-CAT-TTG 504 consensus_4961#1 GATGTGGGGTGTTGCAATGCTGTGGTGCCCATGCTGCCCCAATGACACAAGTGCATGTTG 419 ******* ** **** *** ***** ******* ******** *** *** consensus_4961#0 ATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACA-ACTGGAATATATCA 563 consensus_4961#1 ATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACTTACTGGAATATATCT 479 ******************************************** ************* consensus_4961#0 AAGCAAGCTTAATTTCCCCCAAAAAAAAAAAAAAAAAAAAAA 605 consensus_4961#1 AAGCAAGCTTAA------------------------------ 491 ************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||