cluster # 4966

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Oryza sativa
cluster # 4966 cluster # 4966 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4966#0 length = 532 sequences # 1

consensus_4966#1 length = 330 sequences # 1
consensus_4966#2 length = 201 sequences # 1

consensusID : consensus_4966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence

                              [GAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGCGGCGGCCAANAAANGANAANGANGAAGAAGAAGAAGCGTCTAAACTCCANCTGAAACCGGCGGGGANCAAAGTGTTCTCCAACTGCTGTCCACGGGANANCGCCCCCCCCGGGGCCCGTCCTTCAAGGTGTTCTACCGGGTCTCCTCCCNCNGGGCTCCGTGCCCTTCCTGTTGGGAATCCACCCGGGCACCCCCAAAAACCCATGTCCNAACCNTGTTGCCGCCGCTCANCCGCCGCCGTCCTACTACACCCCCGGCAAGGTTCCCCCCGCGGCGGCGGCGCGGAGAAGAAGAATTTTGGAACNCGGCTCCCNGTTNTTCTNCTGCCCAAAATCTGCTCCGAAAAGCGGCCGGCCGGTNTCNGGCTCCCAANTCTCCTGCNCCCCCCCACCTCNTCTCNCNTCNTCGGCNCNTTCTANTCTCTATCNCTGTCNTTCANGAACCCCCNNTTCCCCNACTTGTTCNTCAANTAAA]

[+] EMBL BE229734             [GAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGCGGCGGCCAANAAANGANAANGANGAAGAAGAAGAAGCGTCTAAACTCCANCTGAAACCGGCGGGGANCAAAGTGTTCTCCAACTGCTGTCCACGGGANANCGCCCCCCCCGGGGCCCGTCCTTCAAGGTGTTCTACCGGGTCTCCTCCCNCNGGGCTCCGTGCCCTTCCTGTTGGGAATCCACCCGGGCACCCCCAAAAACCCATGTCCNAACCNTGTTGCCGCCGCTCANCCGCCGCCGTCCTACTACACCCCCGGCAAGGTTCCCCCCGCGGCGGCGGCGCGGAGAAGAAGAATTTTGGAACNCGGCTCCCNGTTNTTCTNCTGCCCAAAATCTGCTCCGAAAAGCGGCCGGCCGGTNTCNGGCTCCCAANTCTCCTGCNCCCCCCCACCTCNTCTCNCNTCNTCGGCNCNTTCTANTCTCTATCNCTGTCNTTCANGAACCCCCNNTTCCCCNACTTGTTCNTCAANTAAA]




>consensus_4966#0
GAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGCGG
CGGCCAANAAANGANAANGANGAAGAAGAAGAAGCGTCTAAACTCCANCTGAAACCGGCG
GGGANCAAAGTGTTCTCCAACTGCTGTCCACGGGANANCGCCCCCCCCGGGGCCCGTCCT
TCAAGGTGTTCTACCGGGTCTCCTCCCNCNGGGCTCCGTGCCCTTCCTGTTGGGAATCCA
CCCGGGCACCCCCAAAAACCCATGTCCNAACCNTGTTGCCGCCGCTCANCCGCCGCCGTC
CTACTACACCCCCGGCAAGGTTCCCCCCGCGGCGGCGGCGCGGAGAAGAAGAATTTTGGA
ACNCGGCTCCCNGTTNTTCTNCTGCCCAAAATCTGCTCCGAAAAGCGGCCGGCCGGTNTC
NGGCTCCCAANTCTCCTGCNCCCCCCCACCTCNTCTCNCNTCNTCGGCNCNTTCTANTCT
CTATCNCTGTCNTTCANGAACCCCCNNTTCCCCNACTTGTTCNTCAANTAAA

consensusID : consensus_4966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [CCGAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGGCGGCGGGCCAANAAAGGAAAAGGANGAAGAAGAAGAANGCNTCTAANCTCCACCTGAAAACCGGCGGGGAACAAGGTGTTCTCCAACTGCTNTCCAGGGAAAANCGCCNCCCCGGCNCCNNCTTTCAGGGTTTACTACGGNTTCCCCNCCCCGGGCNCCGTGCCCTNCCTTTGGNATTCCCAACCGGGNACCCCCAAAAACCCCATTTCCAANNCCTTGTTGCCGCCGTTCACCCGCCGCCNTCNTATTNAACCCCCGGGAAGGTTTCCC]

[+] EMBL BE229719             [CCGAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGGCGGCGGGCCAANAAAGGAAAAGGANGAAGAAGAAGAANGCNTCTAANCTCCACCTGAAAACCGGCGGGGAACAAGGTGTTCTCCAACTGCTNTCCAGGGAAAANCGCCNCCCCGGCNCCNNCTTTCAGGGTTTACTACGGNTTCCCCNCCCCGGGCNCCGTGCCCTNCCTTTGGNATTCCCAACCGGGNACCCCCAAAAACCCCATTTCCAANNCCTTGTTGCCGCCGTTCACCCGCCGCCNTCNTATTNAACCCCCGGGAAGGTTTCCC]




>consensus_4966#1
CCGAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGG
CGGCGGGCCAANAAAGGAAAAGGANGAAGAAGAAGAANGCNTCTAANCTCCACCTGAAAA
CCGGCGGGGAACAAGGTGTTCTCCAACTGCTNTCCAGGGAAAANCGCCNCCCCGGCNCCN
NCTTTCAGGGTTTACTACGGNTTCCCCNCCCCGGGCNCCGTGCCCTNCCTTTGGNATTCC
CAACCGGGNACCCCCAAAAACCCCATTTCCAANNCCTTGTTGCCGCCGTTCACCCGCCGC
CNTCNTATTNAACCCCCGGGAAGGTTTCCC

consensusID : consensus_4966#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [TCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGCGGCGGCAAGNAAGGAGAAGGAGGAGGAGGAGGAGGCGTCTAAGCTCCAGCTGAAGCCGGCGGGGAGAAGGTGTTCTCCAAGCTGCTGTCCAGGGAGAGCGCCGNCGGCTGTNCGTTTCAGGGTGTACTACGGCGTCGCTCCGCGGGCTC]

[+] EMBL C27031               [TCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGCGGCGGCAAGNAAGGAGAAGGAGGAGGAGGAGGAGGCGTCTAAGCTCCAGCTGAAGCCGGCGGGGAGAAGGTGTTCTCCAAGCTGCTGTCCAGGGAGAGCGCCGNCGGCTGTNCGTTTCAGGGTGTACTACGGCGTCGCTCCGCGGGCTC]




>consensus_4966#2
TCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGCGGCGGCAA
GNAAGGAGAAGGAGGAGGAGGAGGAGGCGTCTAAGCTCCAGCTGAAGCCGGCGGGGAGAA
GGTGTTCTCCAAGCTGCTGTCCAGGGAGAGCGCCGNCGGCTGTNCGTTTCAGGGTGTACT
ACGGCGTCGCTCCGCGGGCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4966#1      CCGAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGG 60
consensus_4966#2      --------TCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGG- 51
consensus_4966#0      --GAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGG- 57
                              *************************************************** 

consensus_4966#1      CGGCGGGCCAANAAAGGAAAAGGANGAAGAAGAAGAANGCNTCTAANCTCCACCTGAAAA 120
consensus_4966#2      CGGCGG--CAAGNAAGGAGAAGGAGGAGGAGGAGGA-GGCGTCTAAGCTCCAGCTGAAG- 107
consensus_4966#0      CGGCGG-CCAANAAANGANAANGANGAAGAAGAAGA-AGCGTCTAAACTCCANCTGAAA- 114
                      ******  ***  ** ** ** ** ** ** ** **  ** ***** ***** *****  

consensus_4966#1      CCGGCGGGGAACAAGGTGTTCTCCAA-CTGCTNTCCAGGGAAAANCGCCNCCCC--GGCN 177
consensus_4966#2      CCGGCGGGGAG-AAGGTGTTCTCCAAGCTGCTGTCCAGGGAGA-GCGCCGNC----GGCT 161
consensus_4966#0      CCGGCGGGGANCAAAGTGTTCTCCAA-CTGCTGTCCACGGGANANCGCCCCCCCCGGGGC 173
                      **********  ** *********** ***** **** **     ****  *    **  

consensus_4966#1      CCNNCTTTCAGGGTTTACTAC--GGNTTCCCCNCCCCGGGCNCCGTGCCCTNCCTTTGGN 235
consensus_4966#2      GTNCGTTTCAGGGTGTACTAC--GGCGTCGC-TCCGCGGGCTC----------------- 201
consensus_4966#0      CCGTCCTTCAAGGTGTTCTACCGGGTCTCCTCCCNCNGGGCTCCGTGCCCTTCCTGTTGG 233
                            **** *** * ****  **  **    *   **** *                 

consensus_4966#1      ATTCCCAACCGGGNACCCCCAAAAACCCCATTTCCAANNCCTTGTTGCCGCCGTTCACCC 295
consensus_4966#2      ------------------------------------------------------------
consensus_4966#0      GAATCCACCCGGGCACCCCCAAAAACCCA--TGTCCNAACCNTGTTGCCGCCGCTCANCC 291
                                                                                  

consensus_4966#1      GCCGCCNTCNTATTNAACCCCCGGGAAGGTTTCCC------------------------- 330
consensus_4966#2      ------------------------------------------------------------
consensus_4966#0      GCCGCCGTCCTACTACACCCCCGGCAAGGTTCCCCCCGCGGCGGCGGCGCGGAGAAGAAG 351
                                                                                  

consensus_4966#1      ------------------------------------------------------------
consensus_4966#2      ------------------------------------------------------------
consensus_4966#0      AATTTTGGAACNCGGCTCCCNGTTNTTCTNCTGCCCAAAATCTGCTCCGAAAAGCGGCCG 411
                                                                                  

consensus_4966#1      ------------------------------------------------------------
consensus_4966#2      ------------------------------------------------------------
consensus_4966#0      GCCGGTNTCNGGCTCCCAANTCTCCTGCNCCCCCCCACCTCNTCTCNCNTCNTCGGCNCN 471
                                                                                  

consensus_4966#1      ------------------------------------------------------------
consensus_4966#2      ------------------------------------------------------------
consensus_4966#0      TTCTANTCTCTATCNCTGTCNTTCANGAACCCCCNNTTCCCCNACTTGTTCNTCAANTAA 531
                                                                                  

consensus_4966#1      -
consensus_4966#2      -
consensus_4966#0      A 532