These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1292 fasta sequence [TCAATTATAACTAAACCCAACAAGCTGTGCCTAGCTCCAACAGCTCAGCTCAGCTAAGCTAGTTGCTAGCAGTGGCCGGTGCGTGATCGGCCATGGCGGCGGCGGCAGCAACGGCGTTGGCCGCCGTGATACTGCTGCTGGTGCTGGCGACGACGGCGGAGGCGGCGTGCTCGGTGAGCGCGATCTACAGCTTCGGCGACTCCATCGCCGACACCGGCAACCTCCTCCGGGAGGGCCCCGCCGTCGGCGCCTTCGCCTCCATCGGCACCTACCCCTACGGCCAGACCCTCCGCCGCCCCACCGGCCGCTGCTCCGACGGCCTCCTCATCATCGACTACTTCGCCATGGCGCTGAACCTGTCGCTGGTGAGCCCGTACCTGGAGAAGGGGGCGAGGTTCGAGAGCGGGGTGAACTTCGCGGTGGCCGGGGCGACGGCGCTGGACCGGAGCTACCTGCTGCAGAGCGGCGTGGTGATGCCGCCGGCGAGCGTGCCGCTCAGCTCGCAGCTCGACTGGTTCAGGTCACACCTCAACTCAACCTGTTCTTCACACCAAGACTGCGCGGAAAAGCTGTCCGGAGCTCTGTTCTTGGTTGGGGAGATAGGAGGGAACGACTACAACTACGCCTTCTTCCAGGGGAGATCCATCGAATCCATGAAGACCTACGTGCCACAAGTTGTGAGAAGCATAATGGACGTTGCAAAGGAGGTGATCGAGCTAGGAGCGACCAAGATCGTCATCCCGGGCAACTTCCCGATCGGGTGCTCGCCGAGTTACCTCTCCCTCTTCTCCACGGCGATCTCCGGCGACTACGACGACCGGGGCTGCCTCAAGAGTTACAACTCCTTCGCCATGTACCACAATGATCAGCTCCGGGCCGCCATAGATGACCTCCGGAAGGTCAACTCGGATGTCGCCATCGTCTACGCAGACTACTATGGCGCCTTCATGCATCTCCTCCAAAAGGCTGACCTCTTAGGGTTCGAGGAGGACTCATTGCTCAAGGCATGTTGCGGCGCAGGCGGAAAGTACAACTTTGACATGAACCTAATGTGTGGCGCAGTGGGAACGAACGTTCGTGCAGACCCAGCGCAGCACATTAGCTGGGATGGCATCCACCTCACTCAACAGGCGTACAAGGCTATGGCTTTGTCCCTTATTATGGAAGGGTTTGCTCAACCAGCTGACATTGTGCAAAAAATCTGGAGTTGCTAGGAGCTTGAGCATGTATATTGTTGAATGTTATAAGCATTGAGTTCGTATGAGCCAACAGTTATACAACGGTAACTATAC] [+] EMBL AK108542 [TCAATTATAACTAAACCCAACAAGCTGTGCCTAGCTCCAACAGCTCAGCTCAGCTAAGCTAGTTGCTAGCAGTGGCCGGTGCGTGATCGGCCATGGCGGCGGCGGCAGCAACGGCGTTGGCCGCCGTGATACTGCTGCTGGTGCTGGCGACGACGGCGGAGGCGGCGTGCTCGGTGAGCGCGATCTACAGCTTCGGCGACTCCATCGCCGACACCGGCAACCTCCTCCGGGAGGGCCCCGCCGTCGGCGCCTTCGCCTCCATCGGCACCTACCCCTACGGCCAGACCCTCCGCCGCCCCACCGGCCGCTGCTCCGACGGCCTCCTCATCATCGACTACTTCGCCATGGCGCTGAACCTGTCGCTGGTGAGCCCGTACCTGGAGAAGGGGGCGAGGTTCGAGAGCGGGGTGAACTTCGCGGTGGCCGGGGCGACGGCGCTGGACCGGAGCTACCTGCTGCAGAGCGGCGTGGTGATGCCGCCGGCGAGCGTGCCGCTCAGCTCGCAGCTCGACTGGTTCAGGTCACACCTCAACTCAACCTGTTCTTCACACCAAGACTGCGCGGAAAAGCTGTCCGGAGCTCTGTTCTTGGTTGGGGAGATAGGAGGGAACGACTACAACTACGCCTTCTTCCAGGGGAGATCCATCGAATCCATGAAGACCTACGTGCCACAAGTTGTGAGAAGCATAATGGACGTTGCAAAGGAGGTGATCGAGCTAGGAGCGACCAAGATCGTCATCCCGGGCAACTTCCCGATCGGGTGCTCGCCGAGTTACCTCTCCCTCTTCTCCACGGCGATCTCCGGCGACTACGACGACCGGGGCTGCCTCAAGAGTTACAACTCCTTCGCCATGTACCACAATGATCAGCTCCGGGCCGCCATAGATGACCTCCGGAAGGTCAACTCGGATGTCGCCATCGTCTACGCAGACTACTATGGCGCCTTCATGCATCTCCTCCAAAAGGCTGACCTCTTAGGGTTCGAGGAGGACTCATTGCTCAAGGCATGTTGCGGCGCAGGCGGAAAGTACAACTTTGACATGAACCTAATGTGTGGCGCAGTGGGAACGAACGTTCGTGCAGACCCAGCGCAGCACATTAGCTGGGATGGCATCCACCTCACTCAACAGGCGTACAAGGCTATGGCTTTGTCCCTTATTATGGAAGGGTTTGCTCAACCAGCTGACATTGTGCAAAAAATCTGGAGTTGCTAGGAGCTTGAGCATGTATATTGTTGAATGTTATAAGCATTGAGTTCGTATGAGCCAACAGTTATACAACGGTAACTATAC] consensusID : consensus_4971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 176 fasta sequence [TTTTGTGAATTTGGCAGTTTTTTTTCAAATTTGATTAAAATTCGTTTAAAATTTTGGTATATCGTCCAAACTGAATGATTAAACCCTGTCGTAACTCGTACCTTGGTGTGAAGAACAGGTTGAGTTGAGGTGTGACCTGAACCAGTCGAGCTGCGAGCTGAGCGGCACGCTCGCCG] [+] EMBL CF332610 [TTTTGTGAATTTGGCAGTTTTTTTTCAAATTTGATTAAAATTCGTTTAAAATTTTGGTATATCGTCCAAACTGAATGATTAAACCCTGTCGTAACTCGTACCTTGGTGTGAAGAACAGGTTGAGTTGAGGTGTGACCTGAACCAGTCGAGCTGCGAGCTGAGCGGCACGCTCGCC ] [-] EMBL CF332611 [ TTTGTGAATTTGGCAGTTTTTTTTCAAATTTGATTAAAATTCGTTTAAAATTTTGGTATATCGTCCAAACTGAATGATTAAACCCTGTCGTAACTCGTACCTTGGTGTGAAGAACAGGTTGAGTTGAGGTGTGACCTGAACCAGTCGAGCTGCGAGCTGAGCGGCACGCTCGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4971#0 TCAATTATAACTAAACCCAACAAGCTGTGCCTAGCTCCAACAGCTCAGCTCAGCTAAGCT 60 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 AGTTGCTAGCAGTGGCCGGTGCGTGATCGGCCATGGCGGCGGCGGCAGCAACGGCGTTGG 120 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 CCGCCGTGATACTGCTGCTGGTGCTGGCGACGACGGCGGAGGCGGCGTGCTCGGTGAGCG 180 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 CGATCTACAGCTTCGGCGACTCCATCGCCGACACCGGCAACCTCCTCCGGGAGGGCCCCG 240 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 CCGTCGGCGCCTTCGCCTCCATCGGCACCTACCCCTACGGCCAGACCCTCCGCCGCCCCA 300 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 CCGGCCGCTGCTCCGACGGCCTCCTCATCATCGACTACTTCGCCATGGCGCTGAACCTGT 360 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 CGCTGGTGAGCCCGTACCTGGAGAAGGGGGCGAGGTTCGAGAGCGGGGTGAACTTCGCGG 420 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 TGGCCGGGGCGACGGCGCTGGACCGGAGCTACCTGCTGCAGAGCGGCGTGGTGATGCCGC 480 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 CGGCGAGCGTGCCGCTCAGCTCGCAGCTCGACTGGTTCAGGTCACACCTCAACTCAACCT 540 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 GTTCTTCACACCAAGACTGCGCGGAAAAGCTGTCCGGAGCTCTGTTCTTGGTTGGGGAGA 600 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 TAGGAGGGAACGACTACAACTACGCCTTCTTCCAGGGGAGATCCATCGAATCCATGAAGA 660 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 CCTACGTGCCACAAGTTGTGAGAAGCATAATGGACGTTGCAAAGGAGGTGATCGAGCTAG 720 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 GAGCGACCAAGATCGTCATCCCGGGCAACTTCCCGATCGGGTGCTCGCCGAGTTACCTCT 780 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 CCCTCTTCTCCACGGCGATCTCCGGCGACTACGACGACCGGGGCTGCCTCAAGAGTTACA 840 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 ACTCCTTCGCCATGTACCACAATGATCAGCTCCGGGCCGCCATAGATGACCTCCGGAAGG 900 consensus_4971#1 --------------------------------------------------TTTTGTGAAT 10 * * * consensus_4971#0 TCAACTCGGATGTCGCCATCGTCTACGCAGACTACTATGGCGCCTTCATGCATCTCCTCC 960 consensus_4971#1 TTGGCA-GTTTTTTTTCAAATTTGATTAAAATTCGTTTAAAATTTT--GGTATATCGTCC 67 * * * * * ** * * * * * * * ** * ** ** *** consensus_4971#0 AAAAGGCTGACCTCTTAGGGTTCGAGGAGGACTCATTGCTCAAGGCATGTTGCGGCGCAG 1020 consensus_4971#1 AAA---CTGAATGATTAAACCCTG--------TCGTAACTCGTACCTTGGTGTGAAGAAC 116 *** **** *** * ** * *** * ** ** * * * consensus_4971#0 GCGGAAAGTACAACTTTGACATGAACCTAATGTGTGGCGCAGTGGGAACGAACGTTCGTG 1080 consensus_4971#1 AGGTTGAGTTGAGGTGTGACCTGAACCAGTCGAGCTGCG-AGCTGAGCGGCACGCTCGCC 175 * *** * * **** ****** * * *** ** * * *** *** consensus_4971#0 CAGACCCAGCGCAGCACATTAGCTGGGATGGCATCCACCTCACTCAACAGGCGTACAAGG 1140 consensus_4971#1 G----------------------------------------------------------- 176 consensus_4971#0 CTATGGCTTTGTCCCTTATTATGGAAGGGTTTGCTCAACCAGCTGACATTGTGCAAAAAA 1200 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 TCTGGAGTTGCTAGGAGCTTGAGCATGTATATTGTTGAATGTTATAAGCATTGAGTTCGT 1260 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 ATGAGCCAACAGTTATACAACGGTAACTATAC 1292 consensus_4971#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||