cluster # 4975

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Oryza sativa
cluster # 4975 cluster # 4975 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4975#0 length = 962 sequences # 1

consensus_4975#1 length = 598 sequences # 2

consensusID : consensus_4975#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 962
fasta sequence

                              [TCTGTAGGGCGGCTGGCGGGTGGGGAGGAGGTCCGGCGGCGGCGGCGGCGGCGCGTGCGACCTCGGGGTTGGACCGTCGGAGAGGCCCGGGAGGCGGCGGCGGCGGCGACGACGACACGGGAGAAGGGAGGTGGCGGCGGCTGCAACGCTTGAGAAGGGAGAAGCGGCCGGAGGCGCCGGCGCGGGAAGAAGCTGTCTTCGGCGTCGTGCCCGCTCCGCCCACCACCGCCTGCTCCACCCGCCGCTACCCCGCGCTCACACACACCCGCCAGCGACGCCGCTGACGGCGCGGACGAAAGATCTGCGGCCATGGACGACGACGGCGGCGACGTCCTCGCTCTCCCCGTCCCGATCCCCGTCGGCGCCATCTTCCTCTCCTGCGGCGCGCCTGCCCGCCGCTCGTCTGCTCCGCCGACCGGCCGCTCCCCGCGCAGTCGGCGGCGGCGAAGGTGACCGTGCCGGCGTCGAGGTCGTGGCCGACGTGGATGTTCTGCTGCGCGAGGTTCCCGAGGATGGACACCGGCTGCTGCTCCGTTATCGCCACGATCGCCAGGCACAGCGTCCCTTCCTGCACCATCACGAACGCGTTCTCCGGCATCAGCGCCAACGTCAAGTCCGGCGTCAAGTCCGAACTCCAGCGTCAAGTCCGGACTCGCCTGTTCGGTTCACTTCCTGCTGGCTGTACACAAGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAAGATCGGAGTGCTATACATCAATCAATTTCTCAGCTGGGAGTGTTACTCCTGCATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATGTATAGCGAGGTAAGACAGCGAAACCGGCGCCACAAAATATCTTGAAATCCTGTTCTTCTGATAAAAGAACAGCTTAGCTTGAGAT]

[+] EMBL AK066983             [TCTGTAGGGCGGCTGGCGGGTGGGGAGGAGGTCCGGCGGCGGCGGCGGCGGCGCGTGCGACCTCGGGGTTGGACCGTCGGAGAGGCCCGGGAGGCGGCGGCGGCGGCGACGACGACACGGGAGAAGGGAGGTGGCGGCGGCTGCAACGCTTGAGAAGGGAGAAGCGGCCGGAGGCGCCGGCGCGGGAAGAAGCTGTCTTCGGCGTCGTGCCCGCTCCGCCCACCACCGCCTGCTCCACCCGCCGCTACCCCGCGCTCACACACACCCGCCAGCGACGCCGCTGACGGCGCGGACGAAAGATCTGCGGCCATGGACGACGACGGCGGCGACGTCCTCGCTCTCCCCGTCCCGATCCCCGTCGGCGCCATCTTCCTCTCCTGCGGCGCGCCTGCCCGCCGCTCGTCTGCTCCGCCGACCGGCCGCTCCCCGCGCAGTCGGCGGCGGCGAAGGTGACCGTGCCGGCGTCGAGGTCGTGGCCGACGTGGATGTTCTGCTGCGCGAGGTTCCCGAGGATGGACACCGGCTGCTGCTCCGTTATCGCCACGATCGCCAGGCACAGCGTCCCTTCCTGCACCATCACGAACGCGTTCTCCGGCATCAGCGCCAACGTCAAGTCCGGCGTCAAGTCCGAACTCCAGCGTCAAGTCCGGACTCGCCTGTTCGGTTCACTTCCTGCTGGCTGTACACAAGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAAGATCGGAGTGCTATACATCAATCAATTTCTCAGCTGGGAGTGTTACTCCTGCATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATGTATAGCGAGGTAAGACAGCGAAACCGGCGCCACAAAATATCTTGAAATCCTGTTCTTCTGATAAAAGAACAGCTTAGCTTGAGAT]




>consensus_4975#0
TCTGTAGGGCGGCTGGCGGGTGGGGAGGAGGTCCGGCGGCGGCGGCGGCGGCGCGTGCGA
CCTCGGGGTTGGACCGTCGGAGAGGCCCGGGAGGCGGCGGCGGCGGCGACGACGACACGG
GAGAAGGGAGGTGGCGGCGGCTGCAACGCTTGAGAAGGGAGAAGCGGCCGGAGGCGCCGG
CGCGGGAAGAAGCTGTCTTCGGCGTCGTGCCCGCTCCGCCCACCACCGCCTGCTCCACCC
GCCGCTACCCCGCGCTCACACACACCCGCCAGCGACGCCGCTGACGGCGCGGACGAAAGA
TCTGCGGCCATGGACGACGACGGCGGCGACGTCCTCGCTCTCCCCGTCCCGATCCCCGTC
GGCGCCATCTTCCTCTCCTGCGGCGCGCCTGCCCGCCGCTCGTCTGCTCCGCCGACCGGC
CGCTCCCCGCGCAGTCGGCGGCGGCGAAGGTGACCGTGCCGGCGTCGAGGTCGTGGCCGA
CGTGGATGTTCTGCTGCGCGAGGTTCCCGAGGATGGACACCGGCTGCTGCTCCGTTATCG
CCACGATCGCCAGGCACAGCGTCCCTTCCTGCACCATCACGAACGCGTTCTCCGGCATCA
GCGCCAACGTCAAGTCCGGCGTCAAGTCCGAACTCCAGCGTCAAGTCCGGACTCGCCTGT
TCGGTTCACTTCCTGCTGGCTGTACACAAGAGGTCATTCAAGATCAGTAACTCATACTCT
ATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAAGA
TCGGAGTGCTATACATCAATCAATTTCTCAGCTGGGAGTGTTACTCCTGCATTGCTCTAC
AATTTATGGGTCATGTAATTTGATCTCTCACAGAATGTATAGCGAGGTAAGACAGCGAAA
CCGGCGCCACAAAATATCTTGAAATCCTGTTCTTCTGATAAAAGAACAGCTTAGCTTGAG
AT

consensusID : consensus_4975#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 598
fasta sequence

                              [GTCGCCACGATTGCCAGGCACAGCGTCCCCTCCTACACCGTCACGGACGCGTTCTCCGGCTTCAGCGCCACCGCCGCGCGGCCGCCGCCACCGCCGAACTCCAGCGTCAAGTCCGGACTCGCTTGTTCGGTTTGCTTCCTGCTGGATGTACACATGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAAGATAGAAGATCGGAGTGTTATACATCAATCAATTTCTTAGCTGGGAATGTTACTCCTGCATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATCTATGGCGAGGAGTAACAAAGCTTATTTTTGCATTGCCCCGAGTCCACAATGATGCGGGAGCTCGCCGCCGAAGCCACCGTCCTTGTTGCCGACCCTGACGAAATCGAGGAACACGGTGTATTACGTGTCCCCGTCCCCCCGCGACAAACGGCGTGCTCCTTGCGCCCAATTCGGTGACGTTGGCGAGGGTGCCCGAAGTTAAACCCCAAAATGATTTGACCGAGGGGGGGACAAGGCTGTATGAAAAA]

[+] EMBL CA755703             [GTCGCCACGATTGCCAGGCACAGCGTCCCCTCCTACACCGTCACGGACGCGTTCTCCGGCTTCAGCGCCACCGCCGCGCGGCCGCCGCCACCGCCGAACTCCAGCGTCAAGTCCGGACTCGCTTGTTCGGTTTGCTTCCTGCTGGATGTACACATGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAAGATAGAAGATCGGAGTGTTATACATCAATCAATTTCTTAGCTGGGAATGTTACTCCTGCATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATCTATGGCGAGGAGTAACAAAGCTTATTTTTGCATTGCCCCGAGTCCACAATGATGCGGGAGCTCGCCGCCGAAGCCACCGTCCTTGTTGCCGACCCTGACGAAATCGAGGAACACGGTGTATTACGTGTCCCCGTCCCCCCGCGACAAACGGCGTGCTCCTTGCGCCCAATTCGGTGACGTTGGCGAGGGTGCCCGAAGTTAAACCCCAAAATGATTTGACCGAGGGGGGGACAAGGCTGTATGAAAAA]
[+] EMBL BU672769             [                                                                                                  CTCCAGCGTCAAGT CGGACTCGCTTG CCGGTTGTATTTCTGCTGGATGTACACATGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGG                                                                                                                                                                                                                                                                                                                                                                                                             ]




>consensus_4975#1
GTCGCCACGATTGCCAGGCACAGCGTCCCCTCCTACACCGTCACGGACGCGTTCTCCGGC
TTCAGCGCCACCGCCGCGCGGCCGCCGCCACCGCCGAACTCCAGCGTCAAGTCCGGACTC
GCTTGTTCGGTTTGCTTCCTGCTGGATGTACACATGAGGTCATTCAAGATCAGTAACTCA
TACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAA
CGAAGATAGAAGATCGGAGTGTTATACATCAATCAATTTCTTAGCTGGGAATGTTACTCC
TGCATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATCTATGGCGAGG
AGTAACAAAGCTTATTTTTGCATTGCCCCGAGTCCACAATGATGCGGGAGCTCGCCGCCG
AAGCCACCGTCCTTGTTGCCGACCCTGACGAAATCGAGGAACACGGTGTATTACGTGTCC
CCGTCCCCCCGCGACAAACGGCGTGCTCCTTGCGCCCAATTCGGTGACGTTGGCGAGGGT
GCCCGAAGTTAAACCCCAAAATGATTTGACCGAGGGGGGGACAAGGCTGTATGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4975#0      TCTGTAGGGCGGCTGGCGGGTGGGGAGGAGGTCCGGCGGCGGCGGCGGCGGCGCGTGCGA 60
consensus_4975#1      ------------------------------------------------------------
                                                                                  

consensus_4975#0      CCTCGGGGTTGGACCGTCGGAGAGGCCCGGGAGGCGGCGGCGGCGGCGACGACGACACGG 120
consensus_4975#1      ------------------------------------------------------------
                                                                                  

consensus_4975#0      GAGAAGGGAGGTGGCGGCGGCTGCAACGCTTGAGAAGGGAGAAGCGGCCGGAGGCGCCGG 180
consensus_4975#1      ------------------------------------------------------------
                                                                                  

consensus_4975#0      CGCGGGAAGAAGCTGTCTTCGGCGTCGTGCCCGCTCCGCCCACCACCGCCTGCTCCACCC 240
consensus_4975#1      ------------------------------------------------------------
                                                                                  

consensus_4975#0      GCCGCTACCCCGCGCTCACACACACCCGCCAGCGACGCCGCTGACGGCGCGGACGAAAGA 300
consensus_4975#1      ------------------------------------------------------------
                                                                                  

consensus_4975#0      TCTGCGGCCATGGACGACGACGGCGGCGACGTCCTCGCTCTCCCCGTCCCGATCCCCGTC 360
consensus_4975#1      ------------------------------------------------------------
                                                                                  

consensus_4975#0      GGCGCCATCTTCCTCTCCTGCGGCGCGCCTGCCCGCCGCTCGTCTGCTCCGCCGACCGGC 420
consensus_4975#1      ------------------------------------------------------------
                                                                                  

consensus_4975#0      CGCTCCCCGCGCAGTCGGCGGCGGCGAAGGTGACCGTGCCGGCGTCGAGGTCGTGGCCGA 480
consensus_4975#1      ------------------------------------------------------------
                                                                                  

consensus_4975#0      CGTGGATGTTCTGCTGCGCGAGGTTCCCGAGGATGGACACCGGCTGCTGCTCCGTTATCG 540
consensus_4975#1      --------------------------------------------------------GTCG 4
                                                                               ***

consensus_4975#0      CCACGATCGCCAGGCACAGCGTCCCTTCCTGCACCATCACGAACGCGTTCTCCGGCATCA 600
consensus_4975#1      CCACGATTGCCAGGCACAGCGTCCCCTCCTACACCGTCACGGACGCGTTCTCCGGCTTCA 64
                      ******* ***************** **** **** ***** ************** ***

consensus_4975#0      GCGCCAACGTCAAGT--CCGGCGTCAAGTCCGAACTCCAGCGTCAAGTCCGGACTCGCCT 658
consensus_4975#1      GCGCCACCGCCGCGCGGCCGCCGCCACCGCCGAACTCCAGCGTCAAGTCCGGACTCGCTT 124
                      ****** ** *  *   *** ** **   ***************************** *

consensus_4975#0      GTTCGGTTCACTTCCTGCTGGCTGTACACAAGAGGTCATTCAAGATCAGTAACTCATACT 718
consensus_4975#1      GTTCGGTTTGCTTCCTGCTGGATGTACACATGAGGTCATTCAAGATCAGTAACTCATACT 184
                      ********  *********** ******** *****************************

consensus_4975#0      CTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAA 778
consensus_4975#1      CTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAA 244
                      ************************************************************

consensus_4975#0      GAT-------CGGAGTGCTATACATCAATCAATTTCTCAGCTGGGAGTGTTACTCCTGCA 831
consensus_4975#1      GATAGAAGATCGGAGTGTTATACATCAATCAATTTCTTAGCTGGGAATGTTACTCCTGCA 304
                      ***       ******* ******************* ******** *************

consensus_4975#0      TTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATGTATAGCGAGG--TA 889
consensus_4975#1      TTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATCTATGGCGAGGAGTA 364
                      ********************************************* *** ******  **

consensus_4975#0      AGACAGCGAAAC----CGGCGCCACAAAAT-ATCTTGAAATCCTGTTCTTCTGATAAAAG 944
consensus_4975#1      ACAAAGCTTATTTTTGCATTGCCCCGAGTCCACAATGATGCGGGAGCTCGCCGCCGAAGC 424
                      * * ***  *      *   *** * *    *   ***            * *   **  

consensus_4975#0      AACAG-CTTAGCTTGAGAT----------------------------------------- 962
consensus_4975#1      CACCGTCCTTGTTGCCGACCCTGACGAAATCGAGGAACACGGTGTATTACGTGTCCCCGT 484
                       ** * * * * *   **                                          

consensus_4975#0      ------------------------------------------------------------
consensus_4975#1      CCCCCCGCGACAAACGGCGTGCTCCTTGCGCCCAATTCGGTGACGTTGGCGAGGGTGCCC 544
                                                                                  

consensus_4975#0      ------------------------------------------------------
consensus_4975#1      GAAGTTAAACCCCAAAATGATTTGACCGAGGGGGGGACAAGGCTGTATGAAAAA 598