These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4980#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1138 fasta sequence [TCAATTCCCATCCTAGCAAGCATGGCCGGCTCCTCCTCTCTTGCATCGCCTCACTCACTGCTGCTACCACTCCTCCTTCTTTTCCTCCTCGTTGCCGCTGCCATAGGCAGCTA-CGACCCCAAGGCGTTCTGCTCCAAGACGACAGACATAGCATCGTGCCTTAGGGTGTTCCCGACACTCCCAGACATCGTCACCAAGGCGCAGGACAACAAAGAGTTGTACAAACGGCTGGTCCGCTACTGCTCTTTCAAGACCTACGAGGCCACGTCGCTCGCGGAATCCATGATTGCCACCACCACCGCTGCCGACCCCAAGATCAGCGCCCCCTTCTTCCCGCAGTGGAAAAGGGACGAGGCGATGACGACAAAAACACCTCCAGGCAAGTGCCTCCTGAGCTGCAACAAGACCATCGGCGAAG-TTGACGCCATCCTAACCTGCGGACACACCTACATGGAAGACAGGCCCCCCATCATCCACCAGAACCTCACCGTCTTGTTCCATGGCGGCCACCCGCCGTCACTCTGCAAGAGTGGATGCCTTGACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCGCCACCAAGTTCAACTATATATGGAGCTTGTTGGATCTCATGAAAGCTGTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACGACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAGCAACTACAAGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCCCTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTAAGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGTTAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACACATACTTGCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACAGCAAGCATATATCATAACCAAACTTATGTTTTTTTTTTGGCATGTAAAGATTGAATTTAGTTTTTTAGGCATAATTGTATTCTTGCCTTTAATTACTTGCTGCAATTGTGATTTTTCC] [+] EMBL AK071532 [TCAATTCCCATCCTAGCAAGCATGGCCGGCTCCTCCTCTCTTGCATCGCCTCACTCACTGCTGCTACCACTCCTCCTTCTTTTCCTCCTCGTTGCCGCTGCCATAGGCAGCTA CGACCCCAAGGCGTTCTGCTCCAAGACGACAGACATAGCATCGTGCCTTAGGGTGTTCCCGACACTCCCAGACATCGTCACCAAGGCGCAGGACAACAAAGAGTTGTACAAACGGCTGGTCCGCTACTGCTCTTTCAAGACCTACGAGGCCACGTCGCTCGCGGAATCCATGATTGCCACCACCACCGCTGCCGACCCCAAGATCAGCGCCCCCTTCTTCCCGCAGTGGAAAAGGGACGAGGCGATGACGACAAAAACACCTCCAGGCAAGTGCCTCCTGAGCTGCAACAAGACCATCGGCGAAG TTGACGCCATCCTAACCTGCGGACACACCTACATGGAAGACAGGCCCCCCATCATCCACCAGAACCTCACCGTCTTGTTCCATGGCGGCCACCCGCCGTCACTCTGCAAGAGTGGATGCCTTGACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCGCCACCAAGTTCAACTATATATGGAGCTTGTTGGATCTCATGAAAGCTGTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACGACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAGCAACTACAAGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCCCTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTAAGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGTTAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACACATACTTGCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACAGCAAGCATATATCATAACCAAACTTATGTTTTTTTTTTGGCATGTAAAGATTGAATTTAGTTTTTTAGGCATAATTGTATTCTTGCCTTTAATTACTTGCTGCAATTGTGATTTTTCC] [+] EMBL C73072 [ CCTCTCTTGCATCGCCTCACTCACTGCTGCTACCACTCCTCCTTCTTTTCCTCCTCGTTGCCGCTGCCATAGGCANTTANCGACCCCAAGGCGTTCTGCTCCAAGACGACAGACATAGCATCGTGCCTTAGGGTGTTCCCGACACTCCCAGACATCGTCACCAAGGCGCAGGACAACAAAGAGTTGTACAAACGGCTGGTCCGCTACTGCTCTTTCAAGACCTACGAGGCCACGTCGCTCGCGGAATCCATGATTGCCACCACCACCGCTGCCGACCCCAAGATCAGCGCCCCCTTCTTCCCGCAGTGGAAAAGGGACGAGGCGATGACGACAAAAACACCTCCAGGCAAGTGCCTCCTGAGCTGCAACAAGACCATCGGCGAAGTTTGACGNNAT CTAA CTGCGGACACA CTACATGG ] consensusID : consensus_4980#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [GGGCGGCCACCNGCCGTCACTCTGCAAGAGTGGATGCCTTGACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCNCCACCAAGTTCAACTATNTATGGAGCTTGTTGGATCTCATGAAAGCTNTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACGACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAGCAACTACAAGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCCCTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTAAGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGTTAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACACATACTTGCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACAGCAAGCATATATCATAACCAAACTTATGTTTTTTTTTTTGGCAAAAAAAAAAAAAAAAAAA] [+] EMBL AU085929 [GGGCGGCCACCNGCCGTCACTCTGCAAGAGTGGATGCCTTGACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCNCCACCAAGTTCAACTATNTATGGAGCTTGTTGGATCTCATGAAAGCTNTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACGACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAGCAACTACAAGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCCCTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTAAGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGTTAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACACATACTTGCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACAGCAAGCATATATCATAACCAAACTTATGTTTTTTTTTTTGGCAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4980#0 TCAATTCCCATCCTAGCAAGCATGGCCGGCTCCTCCTCTCTTGCATCGCCTCACTCACTG 60 consensus_4980#1 ------------------------------------------------------------ consensus_4980#0 CTGCTACCACTCCTCCTTCTTTTCCTCCTCGTTGCCGCTGCCATAGGCAGCTACGACCCC 120 consensus_4980#1 ------------------------------------------------------------ consensus_4980#0 AAGGCGTTCTGCTCCAAGACGACAGACATAGCATCGTGCCTTAGGGTGTTCCCGACACTC 180 consensus_4980#1 ------------------------------------------------------------ consensus_4980#0 CCAGACATCGTCACCAAGGCGCAGGACAACAAAGAGTTGTACAAACGGCTGGTCCGCTAC 240 consensus_4980#1 ------------------------------------------------------------ consensus_4980#0 TGCTCTTTCAAGACCTACGAGGCCACGTCGCTCGCGGAATCCATGATTGCCACCACCACC 300 consensus_4980#1 ------------------------------------------------------------ consensus_4980#0 GCTGCCGACCCCAAGATCAGCGCCCCCTTCTTCCCGCAGTGGAAAAGGGACGAGGCGATG 360 consensus_4980#1 ------------------------------------------------------------ consensus_4980#0 ACGACAAAAACACCTCCAGGCAAGTGCCTCCTGAGCTGCAACAAGACCATCGGCGAAGTT 420 consensus_4980#1 ------------------------------------------------------------ consensus_4980#0 GACGCCATCCTAACCTGCGGACACACCTACATGGAAGACAGGCCCCCCATCATCCACCAG 480 consensus_4980#1 ------------------------------------------------------------ consensus_4980#0 AACCTCACCGTCTTGTTCCATGGCGGCCACCCGCCGTCACTCTGCAAGAGTGGATGCCTT 540 consensus_4980#1 --------------------GGGCGGCCACCNGCCGTCACTCTGCAAGAGTGGATGCCTT 40 ********** **************************** consensus_4980#0 GACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCGCCACCAAGTTCAACTATATATGGAGC 600 consensus_4980#1 GACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCNCCACCAAGTTCAACTATNTATGGAGC 100 ********************************* ***************** ******** consensus_4980#0 TTGTTGGATCTCATGAAAGCTGTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACG 660 consensus_4980#1 TTGTTGGATCTCATGAAAGCTNTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACG 160 ********************* ************************************** consensus_4980#0 ACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAGCAACTACA 720 consensus_4980#1 ACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAGCAACTACA 220 ************************************************************ consensus_4980#0 AGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCC 780 consensus_4980#1 AGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCC 280 ************************************************************ consensus_4980#0 CTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTA 840 consensus_4980#1 CTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTA 340 ************************************************************ consensus_4980#0 AGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGT 900 consensus_4980#1 AGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGT 400 ************************************************************ consensus_4980#0 TAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACACATACTT 960 consensus_4980#1 TAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACACATACTT 460 ************************************************************ consensus_4980#0 GCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACA 1020 consensus_4980#1 GCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACA 520 ************************************************************ consensus_4980#0 GCAAGCATATATCATAACCAAACTTATGTTTTTTTTTT-GGCATGTAAAGATTGAATTTA 1079 consensus_4980#1 GCAAGCATATATCATAACCAAACTTATGTTTTTTTTTTTGGCAAAAAAAAAAAAAAAAAA 580 ************************************** **** *** * ** * consensus_4980#0 GTTTTTTAGGCATAATTGTATTCTTGCCTTTAATTACTTGCTGCAATTGTGATTTTTCC 1138 consensus_4980#1 A---------------------------------------------------------- 581 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||