|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2585 fasta sequence
[TTTTCATCAGCTTCCCTTGCAAGCCTTGCTCCTCCTCCTCCTCCTCCTCCAAAGTCCCCCCAAAATCGGCGCCTCCCCGTCCAATTCTCCGCCGCGATCCGCTCCCCGAACCCGCCGGAGCGCGCAGGACCGCGCGGGGACGCCCCGGGCGCAAATGCGCGCGCCCCCTGCGAGGGTTGGAGATTGTTGTCCTGCTACTGAGATGGATGAAGTGCCGGGTAATCAAGAAGATCCCAGACTTGGGGCCTATGCCGACAAGATCACTGATGCGATGTTTGCGGACCATGTGGAGTTGGGGTCTCATTATGCAGGTGATTCTTCTTCAGAGGCAGGATGGGCTCCAATGATCGCGAGAATGCAGTCGCAGTCGCAGCTGGGGAGTAACCAGCTTGGTGTCTCCTTTGAGAATGGCAGTTTGCCAGATGACCCGGCGTCGTTGGCATCGGCATTCAAGAACATGAGCTTGGGATTCAGGGATTTTACTGTTGGCACTCCTGCTAATCCTGTCAGTGTTGCACCCCTAGGTGGACATTATCCTGCAAGTCATGTGATTTCATCTGGTGAGACCACAATGAACTCATTTCATCAGCAGGAGTTTGCTCAAGATGGTTTCAGGCCTTCATCTCTGAATCCCAATGTTGCTGAATACATGAAGCCGAAGTACGGTGTACACAATGTTCAGATGTGCACCGGGCTGCATGGCTCGGATTATGTTTCTGGGGACCCGTATAATCTACCATCATCAGCTTCACCTTTACAGAAACAGTATTTTATTGATGGGCAATTCCGGGCTAATGCACCATATCAGCAGACTGGCTCGAATTTCATGAGGCAAGATTTTGATGCTGACAGTCATTATCTTTTGCAATCCCAGTATGCTTATCAGCAAATGCCACAGGTCGCTGGATCTGATGTTCATTGGGTTAGAAGCAACCAACATGGTGTTCACTCTTCTATCCCTGCAGCTTCACCTTATCTCAGGACACCAATGGTTGGTCAGCAAGCACATAGCAGTGCTGATACTTACTGGAATGGTGCTGCTATTTCACATGGAAACAACCAGCTGAATTCCACATTTGTGAACAATTGCTCATGTATAATTTACCCTGATTGTTCACGCGAAATCTGCGAATATTGCCAGATGAAGCAAGCAGAAAAGTTGAAGCATCGTTATATGTTCAGGCGTTCATCCAAAGGTTTCCTGCAGCCTCAGATTTTTGATAAGGTCAACATTAAATGTTTTCCTGGAAAGACGATGGTGAAGTCTGATGATATAAATTCAGCGAGAAATATTCAGTCTGTCTTTGAACCTAATGGCCGCATTGAAATGAATCAGAGAATTAACCAGCATGGACACAATCAACATCTTAATATTCAGGGCAACGATTTCTTGCTTTTTGACAGGCTAAACTCCCAGGCTCTGTCACCTGTGGAATCTGAATATGGTTTGGCCATGAAAATTCCTCAAATGAGTTATAGTTCAGTAGATGAAGTTGTTGGGAAAATTCATCTCTTGGCAAAGGATCAGAATGGCTGCCGCTTCCTACAGAGGATATTTACAGAAGGTACTTCGGAGAATGTTAAAAAGGTCTTTGATGGAATCATTGAACATATTGGTGAACTTGTGGTCGATCCATTTGGAAACTACTTGGTACAAAAGCTACTTGAAGAGTGCAACCATGATCAGAAGATGCATATAGTCTATGAAATAACCAAAAGACCAGGGCAGCTTATTAAATTTTCATGCGACATGCATGGGACACGTGTAGTGCAAAAGGTGATAGAAACAATAAACTCGCCAGATGAAGTTTCCATGGTTGTATGTGCCCTGAGCTCTGGTGCCATCACTTTGATGATGGATGCAAATGGCTGTCATGTTGCACTCCGCTGCTTGCAAAAATTCTCACATGAGCACAAAGCATTCCTTCTTAATGTGGCCATGGAATATTACTTTGAGCTAGCCCAGGATCGTCAAGGTTGTTGTATCATTCAAAAATGCATTCTTCATGCAAATAAGGAACAGAAGAACCAGTTGTTGTACAATATCACTTCCAGGGCTCTTGAGCTGTCAGAGCATCAGTATGGGAACTATGTTGTACAGTATATTCTTGATCTCCACATTTCATGGGCGACAGATGAAATACTGGACAAGCTGGAAGATCATTTCGGATCTCTGTCGATGCAAAAAAGTAGCAGCAATGTGGTAGAGAAATGTTTAAAAGAAGCATCGTGGCCTAAACGTGTTAAAATCATTCACGAGCTTATCAATGACCCTAAGTTACTGCATATCTTGATCGACCCATATGGGAACTATGTGATCCAAACAGCGCTCAAGGAGTGTGAGGATGCTGCAGTACGCGCTGTGCTGATCGGAGCCATTAGGCCACATGTTGCTGCTCTTCGAAACAACATGTTTGGGAAGAGAATTCTGTCAAAAACTTACCTGAAGAACAGGAAGCACTAATCTTGCACCTTTGGGCTTTTCTTCTGGAGTCCACCTGTCAGGCAATGTGCATAAGGTGCAACACTAATGTATCTGTAAGAATCATATGCTACAGAATAGATCCACTCAAATTAAGTAGATT]
[+] EMBL AK068902 [TTTTCATCAGCTTCCCTTGCAAGCCTTGCTCCTCCTCCTCCTCCTCCTCCAAAGTCCCCCCAAAATCGGCGCCTCCCCGTCCAATTCTCCGCCGCGATCCGCTCCCCGAACCCGCCGGAGCGCGCAGGACCGCGCGGGGACGCCCCGGGCGCAAATGCGCGCGCCCCCTGCGAGGGTTGGAGATTGTTGTCCTGCTACTGAGATGGATGAAGTGCCGGGTAATCAAGAAGATCCCAGACTTGGGGCCTATGCCGACAAGATCACTGATGCGATGTTTGCGGACCATGTGGAGTTGGGGTCTCATTATGCAGGTGATTCTTCTTCAGAGGCAGGATGGGCTCCAATGATCGCGAGAATGCAGTCGCAGTCGCAGCTGGGGAGTAACCAGCTTGGTGTCTCCTTTGAGAATGGCAGTTTGCCAGATGACCCGGCGTCGTTGGCATCGGCATTCAAGAACATGAGCTTGGGATTCAGGGATTTTACTGTTGGCACTCCTGCTAATCCTGTCAGTGTTGCACCCCTAGGTGGACATTATCCTGCAAGTCATGTGATTTCATCTGGTGAGACCACAATGAACTCATTTCATCAGCAGGAGTTTGCTCAAGATGGTTTCAGGCCTTCATCTCTGAATCCCAATGTTGCTGAATACATGAAGCCGAAGTACGGTGTACACAATGTTCAGATGTGCACCGGGCTGCATGGCTCGGATTATGTTTCTGGGGACCCGTATAATCTACCATCATCAGCTTCACCTTTACAGAAACAGTATTTTATTGATGGGCAATTCCGGGCTAATGCACCATATCAGCAGACTGGCTCGAATTTCATGAGGCAAGATTTTGATGCTGACAGTCATTATCTTTTGCAATCCCAGTATGCTTATCAGCAAATGCCACAGGTCGCTGGATCTGATGTTCATTGGGTTAGAAGCAACCAACATGGTGTTCACTCTTCTATCCCTGCAGCTTCACCTTATCTCAGGACACCAATGGTTGGTCAGCAAGCACATAGCAGTGCTGATACTTACTGGAATGGTGCTGCTATTTCACATGGAAACAACCAGCTGAATTCCACATTTGTGAACAATTGCTCATGTATAATTTACCCTGATTGTTCACGCGAAATCTGCGAATATTGCCAGATGAAGCAAGCAGAAAAGTTGAAGCATCGTTATATGTTCAGGCGTTCATCCAAAGGTTTCCTGCAGCCTCAGATTTTTGATAAGGTCAACATTAAATGTTTTCCTGGAAAGACGATGGTGAAGTCTGATGATATAAATTCAGCGAGAAATATTCAGTCTGTCTTTGAACCTAATGGCCGCATTGAAATGAATCAGAGAATTAACCAGCATGGACACAATCAACATCTTAATATTCAGGGCAACGATTTCTTGCTTTTTGACAGGCTAAACTCCCAGGCTCTGTCACCTGTGGAATCTGAATATGGTTTGGCCATGAAAATTCCTCAAATGAGTTATAGTTCAGTAGATGAAGTTGTTGGGAAAATTCATCTCTTGGCAAAGGATCAGAATGGCTGCCGCTTCCTACAGAGGATATTTACAGAAGGTACTTCGGAGAATGTTAAAAAGGTCTTTGATGGAATCATTGAACATATTGGTGAACTTGTGGTCGATCCATTTGGAAACTACTTGGTACAAAAGCTACTTGAAGAGTGCAACCATGATCAGAAGATGCATATAGTCTATGAAATAACCAAAAGACCAGGGCAGCTTATTAAATTTTCATGCGACATGCATGGGACACGTGTAGTGCAAAAGGTGATAGAAACAATAAACTCGCCAGATGAAGTTTCCATGGTTGTATGTGCCCTGAGCTCTGGTGCCATCACTTTGATGATGGATGCAAATGGCTGTCATGTTGCACTCCGCTGCTTGCAAAAATTCTCACATGAGCACAAAGCATTCCTTCTTAATGTGGCCATGGAATATTACTTTGAGCTAGCCCAGGATCGTCAAGGTTGTTGTATCATTCAAAAATGCATTCTTCATGCAAATAAGGAACAGAAGAACCAGTTGTTGTACAATATCACTTCCAGGGCTCTTGAGCTGTCAGAGCATCAGTATGGGAACTATGTTGTACAGTATATTCTTGATCTCCACATTTCATGGGCGACAGATGAAATACTGGACAAGCTGGAAGATCATTTCGGATCTCTGTCGATGCAAAAAAGTAGCAGCAATGTGGTAGAGAAATGTTTAAAAGAAGCATCGTGGCCTAAACGTGTTAAAATCATTCACGAGCTTATCAATGACCCTAAGTTACTGCATATCTTGATCGACCCATATGGGAACTATGTGATCCAAACAGCGCTCAAGGAGTGTGAGGATGCTGCAGTACGCGCTGTGCTGATCGGAGCCATTAGGCCACATGTTGCTGCTCTTCGAAACAACATGTTTGGGAAGAGAATTCTGTCAAAAACTTACCTGAAGAACAGGAAGCACTAATCTTGCACCTTTGGGCTTTTCTTCTGGAGTCCACCTGTCAGGCAATGTGCATAAGGTGCAACACTAATGTATCTGTAAGAATCATATGCTACAGAATAGATCCACTCAAATTAAGTAGATT]
consensusID : consensus_499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 214 fasta sequence
[CCATCGTTGGCCTAAACGTGTTAAAATCATTCACGAGCTTATCAACGACCCTAAGTTACTGCATATCTTGATCGACCCATATGGGAACTATGTGATCCAAACAGCGCTCAAGGAGTGTGAGGATGCTGCAGTACGATCGCGCTGTGCTGATCGAGCATAGGCACATGTGCGTCTCTGCAAACACAGTTGGGAGAGATCTGTCAAACTACGTAGA]
[+] EMBL AA751138 [CCATCGTTGGCCTAAACGTGTTAAAATCATTCACGAGCTTATCAACGACCCTAAGTTACTGCATATCTTGATCGACCCATATGGGAACTATGTGATCCAAACAGCGCTCAAGGAGTGTGAGGATGCTGCAGTACGATCGCGCTGTGCTGATCGAGCATAGGCACATGTGCGTCTCTGCAAACACAGTTGGGAGAGATCTGTCAAACTACGTAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_499#0 TTTTCATCAGCTTCCCTTGCAAGCCTTGCTCCTCCTCCTCCTCCTCCTCCAAAGTCCCCC 60
consensus_499#1 ------------------------------------------------------------
consensus_499#0 CAAAATCGGCGCCTCCCCGTCCAATTCTCCGCCGCGATCCGCTCCCCGAACCCGCCGGAG 120
consensus_499#1 ------------------------------------------------------------
consensus_499#0 CGCGCAGGACCGCGCGGGGACGCCCCGGGCGCAAATGCGCGCGCCCCCTGCGAGGGTTGG 180
consensus_499#1 ------------------------------------------------------------
consensus_499#0 AGATTGTTGTCCTGCTACTGAGATGGATGAAGTGCCGGGTAATCAAGAAGATCCCAGACT 240
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TGGGGCCTATGCCGACAAGATCACTGATGCGATGTTTGCGGACCATGTGGAGTTGGGGTC 300
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TCATTATGCAGGTGATTCTTCTTCAGAGGCAGGATGGGCTCCAATGATCGCGAGAATGCA 360
consensus_499#1 ------------------------------------------------------------
consensus_499#0 GTCGCAGTCGCAGCTGGGGAGTAACCAGCTTGGTGTCTCCTTTGAGAATGGCAGTTTGCC 420
consensus_499#1 ------------------------------------------------------------
consensus_499#0 AGATGACCCGGCGTCGTTGGCATCGGCATTCAAGAACATGAGCTTGGGATTCAGGGATTT 480
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TACTGTTGGCACTCCTGCTAATCCTGTCAGTGTTGCACCCCTAGGTGGACATTATCCTGC 540
consensus_499#1 ------------------------------------------------------------
consensus_499#0 AAGTCATGTGATTTCATCTGGTGAGACCACAATGAACTCATTTCATCAGCAGGAGTTTGC 600
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TCAAGATGGTTTCAGGCCTTCATCTCTGAATCCCAATGTTGCTGAATACATGAAGCCGAA 660
consensus_499#1 ------------------------------------------------------------
consensus_499#0 GTACGGTGTACACAATGTTCAGATGTGCACCGGGCTGCATGGCTCGGATTATGTTTCTGG 720
consensus_499#1 ------------------------------------------------------------
consensus_499#0 GGACCCGTATAATCTACCATCATCAGCTTCACCTTTACAGAAACAGTATTTTATTGATGG 780
consensus_499#1 ------------------------------------------------------------
consensus_499#0 GCAATTCCGGGCTAATGCACCATATCAGCAGACTGGCTCGAATTTCATGAGGCAAGATTT 840
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TGATGCTGACAGTCATTATCTTTTGCAATCCCAGTATGCTTATCAGCAAATGCCACAGGT 900
consensus_499#1 ------------------------------------------------------------
consensus_499#0 CGCTGGATCTGATGTTCATTGGGTTAGAAGCAACCAACATGGTGTTCACTCTTCTATCCC 960
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TGCAGCTTCACCTTATCTCAGGACACCAATGGTTGGTCAGCAAGCACATAGCAGTGCTGA 1020
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TACTTACTGGAATGGTGCTGCTATTTCACATGGAAACAACCAGCTGAATTCCACATTTGT 1080
consensus_499#1 ------------------------------------------------------------
consensus_499#0 GAACAATTGCTCATGTATAATTTACCCTGATTGTTCACGCGAAATCTGCGAATATTGCCA 1140
consensus_499#1 ------------------------------------------------------------
consensus_499#0 GATGAAGCAAGCAGAAAAGTTGAAGCATCGTTATATGTTCAGGCGTTCATCCAAAGGTTT 1200
consensus_499#1 ------------------------------------------------------------
consensus_499#0 CCTGCAGCCTCAGATTTTTGATAAGGTCAACATTAAATGTTTTCCTGGAAAGACGATGGT 1260
consensus_499#1 ------------------------------------------------------------
consensus_499#0 GAAGTCTGATGATATAAATTCAGCGAGAAATATTCAGTCTGTCTTTGAACCTAATGGCCG 1320
consensus_499#1 ------------------------------------------------------------
consensus_499#0 CATTGAAATGAATCAGAGAATTAACCAGCATGGACACAATCAACATCTTAATATTCAGGG 1380
consensus_499#1 ------------------------------------------------------------
consensus_499#0 CAACGATTTCTTGCTTTTTGACAGGCTAAACTCCCAGGCTCTGTCACCTGTGGAATCTGA 1440
consensus_499#1 ------------------------------------------------------------
consensus_499#0 ATATGGTTTGGCCATGAAAATTCCTCAAATGAGTTATAGTTCAGTAGATGAAGTTGTTGG 1500
consensus_499#1 ------------------------------------------------------------
consensus_499#0 GAAAATTCATCTCTTGGCAAAGGATCAGAATGGCTGCCGCTTCCTACAGAGGATATTTAC 1560
consensus_499#1 ------------------------------------------------------------
consensus_499#0 AGAAGGTACTTCGGAGAATGTTAAAAAGGTCTTTGATGGAATCATTGAACATATTGGTGA 1620
consensus_499#1 ------------------------------------------------------------
consensus_499#0 ACTTGTGGTCGATCCATTTGGAAACTACTTGGTACAAAAGCTACTTGAAGAGTGCAACCA 1680
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TGATCAGAAGATGCATATAGTCTATGAAATAACCAAAAGACCAGGGCAGCTTATTAAATT 1740
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TTCATGCGACATGCATGGGACACGTGTAGTGCAAAAGGTGATAGAAACAATAAACTCGCC 1800
consensus_499#1 ------------------------------------------------------------
consensus_499#0 AGATGAAGTTTCCATGGTTGTATGTGCCCTGAGCTCTGGTGCCATCACTTTGATGATGGA 1860
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TGCAAATGGCTGTCATGTTGCACTCCGCTGCTTGCAAAAATTCTCACATGAGCACAAAGC 1920
consensus_499#1 ------------------------------------------------------------
consensus_499#0 ATTCCTTCTTAATGTGGCCATGGAATATTACTTTGAGCTAGCCCAGGATCGTCAAGGTTG 1980
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TTGTATCATTCAAAAATGCATTCTTCATGCAAATAAGGAACAGAAGAACCAGTTGTTGTA 2040
consensus_499#1 ------------------------------------------------------------
consensus_499#0 CAATATCACTTCCAGGGCTCTTGAGCTGTCAGAGCATCAGTATGGGAACTATGTTGTACA 2100
consensus_499#1 ------------------------------------------------------------
consensus_499#0 GTATATTCTTGATCTCCACATTTCATGGGCGACAGATGAAATACTGGACAAGCTGGAAGA 2160
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TCATTTCGGATCTCTGTCGATGCAAAAAAGTAGCAGCAATGTGGTAGAGAAATGTTTAAA 2220
consensus_499#1 ------------------------------------------------------------
consensus_499#0 AGAAGCATCGT-GGCCTAAACGTGTTAAAATCATTCACGAGCTTATCAATGACCCTAAGT 2279
consensus_499#1 ----CCATCGTTGGCCTAAACGTGTTAAAATCATTCACGAGCTTATCAACGACCCTAAGT 56
****** ************************************* **********
consensus_499#0 TACTGCATATCTTGATCGACCCATATGGGAACTATGTGATCCAAACAGCGCTCAAGGAGT 2339
consensus_499#1 TACTGCATATCTTGATCGACCCATATGGGAACTATGTGATCCAAACAGCGCTCAAGGAGT 116
************************************************************
consensus_499#0 GTGAGGATGCTGCAGTACG----CGCTGTGCTGATCGGAGCCATTAGGCCACATGTTGCT 2395
consensus_499#1 GTGAGGATGCTGCAGTACGATCGCGCTGTGCTGATCGAG--CATAGG--CACATGT-GCG 171
******************* ************** *** * ******* **
consensus_499#0 GCTCTTCGAAACAACATGTTTGGGAAGAGAATTCTGTCAAAAACTTACCTGAAGAACAGG 2455
consensus_499#1 TCTCTGCA----AACACAGTTGGGA---GAGATCTGTCAAA---CTACGTAGA------- 214
**** * **** ****** ** ********* *** * *
consensus_499#0 AAGCACTAATCTTGCACCTTTGGGCTTTTCTTCTGGAGTCCACCTGTCAGGCAATGTGCA 2515
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TAAGGTGCAACACTAATGTATCTGTAAGAATCATATGCTACAGAATAGATCCACTCAAAT 2575
consensus_499#1 ------------------------------------------------------------
consensus_499#0 TAAGTAGATT 2585
consensus_499#1 ----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||