These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5002#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1142 fasta sequence [CGGTAGCGGCGGAGCTGGCGCCGCGCACGATCGCCCCCAGCCACAGCCATCCTCCTCTCGCCCGAGGTGAGCTCCGATCCGTCTTTGCCTTTGCCCCGATCGTACCCCGGCTGCGATGGAGGGGGGGAGCAACGACTTCCCGGGGGACCTCCTGCGCGCGGTCCTGCAGAGGCTGCCGCCGCCCGACCTCGCGAGGGCGGCGTGCGTCTGCCGGCTGTGGCGCGGGGTCGCCTCCGACCGCGCCGTGCTGGAGGCCGCCTTCGCGTCGCCCTGGGGGGTGCGCCGCGTCGTCGGCGAGCCGGAGACGAGGGCCTTCTGGCGCGCCGCGTCCCTCGCCCGGTTCGCGCTCTCGCACACCGTCCGCCGCGGGGACACCGTCCCCGGCATCGCGCTCAAGTACTCCATCCAGGTGACCGATATAAAACGTTTCAACAACATGATGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGATACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAACGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATCCTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCGAAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCACTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAAGGGCATGGCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATATATGTGGTTTACCCTCTGTACATGTAATAATGTGAATTTGTGAACATATGTAATGTATCATCTTTTTTTTTCTCGGTGTGATGAACTTGATGAAATCCATAGCAATTGCTTTCTTTACATAT] [+] EMBL AK070428 [CGGTAGCGGCGGAGCTGGCGCCGCGCACGATCGCCCCCAGCCACAGCCATCCTCCTCTCGCCCGAGGTGAGCTCCGATCCGTCTTTGCCTTTGCCCCGATCGTACCCCGGCTGCGATGGAGGGGGGGAGCAACGACTTCCCGGGGGACCTCCTGCGCGCGGTCCTGCAGAGGCTGCCGCCGCCCGACCTCGCGAGGGCGGCGTGCGTCTGCCGGCTGTGGCGCGGGGTCGCCTCCGACCGCGCCGTGCTGGAGGCCGCCTTCGCGTCGCCCTGGGGGGTGCGCCGCGTCGTCGGCGAGCCGGAGACGAGGGCCTTCTGGCGCGCCGCGTCCCTCGCCCGGTTCGCGCTCTCGCACACCGTCCGCCGCGGGGACACCGTCCCCGGCATCGCGCTCAAGTACTCCATCCAGGTGACCGATATAAAACGTTTCAACAACATGATGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGATACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAACGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATCCTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCGAAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCACTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAAGGGCATGGCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATATATGTGGTTTACCCTCTGTACATGTAATAATGTGAATTTGTGAACATATGTAATGTATCATC ] [-] EMBL CB657385 [ TATAAAACGTTTCAACAACATGATGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGATACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAACGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATCCTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCGAAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCACTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAAGGGCATGGCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATATATGTGGTTTACCCTCTGTACATGTAATAATGTGAATTTGTGAACATATGTAATGTATCATCTTTTTTTTTCTCGGTGTGATGAACTTGATGAAATCCATAGCAATTGCTTTCTTTACATAT] consensusID : consensus_5002#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CGTGCCGATTCGGCACGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGATACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAACGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATCCTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCGAAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCACTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAANGGCATGGCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATATATGTGGGTTACCCTCTGTACATGTAATAATGNGAATTTGNGAACATATGTAATGGATCATCTTT] [+] EMBL BE230618 [CGTGCCGATTCGGCACGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGATACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAACGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATCCTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCGAAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCACTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAANGGCATGGCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATATATGTGGGTTACCCTCTGTACATGTAATAATGNGAATTTGNGAACATATGTAATGGATCATCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5002#0 CGGTAGCGGCGGAGCTGGCGCCGCGCACGATCGCCCCCAGCCACAGCCATCCTCCTCTCG 60 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 CCCGAGGTGAGCTCCGATCCGTCTTTGCCTTTGCCCCGATCGTACCCCGGCTGCGATGGA 120 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 GGGGGGGAGCAACGACTTCCCGGGGGACCTCCTGCGCGCGGTCCTGCAGAGGCTGCCGCC 180 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 GCCCGACCTCGCGAGGGCGGCGTGCGTCTGCCGGCTGTGGCGCGGGGTCGCCTCCGACCG 240 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 CGCCGTGCTGGAGGCCGCCTTCGCGTCGCCCTGGGGGGTGCGCCGCGTCGTCGGCGAGCC 300 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 GGAGACGAGGGCCTTCTGGCGCGCCGCGTCCCTCGCCCGGTTCGCGCTCTCGCACACCGT 360 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 CCGCCGCGGGGACACCGTCCCCGGCATCGCGCTCAAGTACTCCATCCAGGTGACCGATAT 420 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 AAAACGTTTCAACAACATGATGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGAT 480 consensus_5002#1 ----CGTGCCGATT-CGGCACGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGAT 55 *** * * * * *************************************** consensus_5002#0 ACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAA 540 consensus_5002#1 ACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAA 115 ************************************************************ consensus_5002#0 CGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATC 600 consensus_5002#1 CGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATC 175 ************************************************************ consensus_5002#0 CTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCG 660 consensus_5002#1 CTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCG 235 ************************************************************ consensus_5002#0 AAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCC 720 consensus_5002#1 AAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCC 295 ************************************************************ consensus_5002#0 AAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCA 780 consensus_5002#1 AAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCA 355 ************************************************************ consensus_5002#0 CTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATC 840 consensus_5002#1 CTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATC 415 ************************************************************ consensus_5002#0 TGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGA 900 consensus_5002#1 TGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGA 475 ************************************************************ consensus_5002#0 GCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAAGGGCATG 960 consensus_5002#1 GCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAANGGCATG 535 ***************************************************** ****** consensus_5002#0 GCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATA 1020 consensus_5002#1 GCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATA 595 ************************************************************ consensus_5002#0 TATGTGGTTTACCCTCTGTACATGTAATAATGTGAATTTGTGAACATATGTAATGTATCA 1080 consensus_5002#1 TATGTGGGTTACCCTCTGTACATGTAATAATGNGAATTTGNGAACATATGTAATGGATCA 655 ******* ************************ ******* ************** **** consensus_5002#0 TCTTTTTTTTTCTCGGTGTGATGAACTTGATGAAATCCATAGCAATTGCTTTCTTTACAT 1140 consensus_5002#1 TCTTT------------------------------------------------------- 660 ***** consensus_5002#0 AT 1142 consensus_5002#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||