Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5007 cluster # 5007       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5007#0 length = 960 sequences # 3  
consensusID : consensus_5007#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 960
fasta sequence 
                              [AGCCAATCGGTCCCCACGCTTACAAGCTACAACTTCACCTCACCCCTGCTGCATTCTCGCGTCCCAAGTTACAATCCATCAATGGCGGCTTCCACTTCCGCCGCGGTTAAGATGGCCGCCGCCGTCCTCTGCCTGATGGTCGCCCTCTCCGTCGCCGCCGGGCAGCTCACGACGACGGCCGCCGCCGCCACCTCCACGCGCGTGGATGATCACGTCGTCGAGGACGACGACGACGCGACGCCGACGACGCTGCAGCAGCTGGAGACGCGCCTCGCCGACGATCAGGACCTCGCCGACCTCCTCGACGGCGGCGACGGCGCCGCCACCATCTGCCCCAGCAACTGCCAGAAGTGCCTGGTCAAGTGCGCGGGCACCTGCGTCGCCGACATCGTCAGCCCGCCCACCTTCGTCGCCTGCTTCCTCAAGTGCGCCGTCGTCAAGCTCTGCTTCGCCAAGG-TTTGATCATCATCGCGTCGGCGGCCGGCCGGCG-ATGGTCGACGGCGGCGCCGGTGCCGCTTGATTGCTTGCCTTGTTGTCTTGCTAGCTCGTGTCTACGTACTCCCTCCGTACCTATATATTTAACACCGTTAATTTTTTTAATATATTTGACAGTTTATCTTATTAAAAAAATAAAAAAATATTTTTTTCTTATTATTAAATATGTTTTTATTATATATATAGTTTTACATATTTAAAAAAATTAAATAAAATAAACGATTAAATATATTTAAATAAATTAACGGCGTTAAATATTTAAAAACGGAGGGAGTAGTCGAGGTCGCCATGCGTGCACTCCTGCATGCATGCATGCGTGGTGGTGGTGTGTGGAGACGATGATATTGGTGTC-GC-GTGTATCATTTCAGTTGCCGATCGATTTACGGCTGATGGTGTCGTTGACCACACAACTGTTTGGTGACTGAGGGAAATATATGTAACGTGTGTCCATCGGTAAAGATGTAA]

[+] EMBL AK107676             [AGCCAATCGGTCCCCACGCTTACAAGCTACAACTTCACCTCACCCCTGCTGCATTCTCGCGTCCCAAGTTACAATCCATCAATGGCGGCTTCCACTTCCGCCGCGGTTAAGATGGCCGCCGCCGTCCTCTGCCTGATGGTCGCCCTCTCCGTCGCCGCCGGGCAGCTCACGACGACGGCCGCCGCCGCCACCTCCACGCGCGTGGATGATCACGTCGTCGAGGACGACGACGACGCGACGCCGACGACGCTGCAGCAGCTGGAGACGCGCCTCGCCGACGATCAGGACCTCGCCGACCTCCTCGACGGCGGCGACGGCGCCGCCACCATCTGCCCCAGCAACTGCCAGAAGTGCCTGGTCAAGTGCGCGGGCACCTGCGTCGCCGACATCGTCAGCCCGCCCACCTTCGTCGCCTGCTTCCTCAAGTGCGCCGTCGTCAAGCTCTGCTTCGCCAAGG TTTGATCATCATCGCGTCGGCGGCCGGCCGGCG ATGGTCGACGGCGGCGCCGGTGCCGCTTGATTGCTTGCCTTGTTGTCTTGCTAGCTCGTGTCTACGTACTCCCTCCGTACCTATATATTTAACACCGTTAATTTTTTTAATATATTTGACAGTTTATCTTATTAAAAAAATAAAAAAATATTTTTTTCTTATTATTAAATATGTTTTTATTATATATATAGTTTTACATATTTAAAAAAATTAAATAAAATAAACGATTAAATATATTTAAATAAATTAACGGCGTTAAATATTTAAAAACGGAGGGAGTAGTCGAGGTCGCCATGCGTGCACTCCTGCATGCATGCATGCGTGGTGGTGGTGTGTGGAGACGATGATATTGGTGTC GC GTGTATCATTTCAGTTGCCGATCGATTTACGGCTGATGGTGTCGTTGACCACACAACTGTTTGGTGACTGAGGGAAATATATGTAACGTGTGTCCATCGGTAAAGATGT  ]
[+] EMBL AU166601             [                                                                                             ACTTCCGCCGCGGTTAAGATGGCCGCCGCCGTCCTCTGCCTGATGGTCGCCCTCTCCGTCGCCGCCGGGCAGCTCACGACGACGGCCGCCGCCGCCACCTCCACGCGCGTGGATGATCACGTCGTCGAGGACGACGACGACGCGACGCCGACGACGCTGCAGCAGCTGGAGACGCGCCTCGCCGACGATCAGGACCTCGCCGACCTCCTCGACGGCGGCGACGGCGCCGCCACCATCTGCCCCAGCAACTGCCAGAAGTGCCTGGTCAAGTGCGCGGGCACCTGCGTCGCCGACATCGTCAGCCCGCCCACCTTCGTCGCCTGCTTCCTTAAGTGCGCCGTCGTCAAGCTCTGCTTCGCCAAGGTTTTGATCATTATCGCGTCNGCGGCCGGCCGGCG ATGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU166600             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGGCCGGCGAATGGTCGACGGCGGCGCCGGTGCCGCTTGATTGCTTGCCTTGTTGTCTTGCTAGCTCGTGTCTACGTACTCCCTCCGTACCTATATATTTAACNCCGTTAATTTTTTTAATATATTTGACAGTTTATCTTATTAAAAAAATAAAAAAATATTTTTTTCTTATTATTAAATATGTTTTTATTATATANANAGTTTTACATATTTAAAAAAATTAAATAAAATAAACGATTAAATATATTTAAATAAATTAACGGCGTTAAATATTTAAAAACGGAGGGAGTAGTCGAGGTCGCCATGCGTGCACTCCTGCATGCATGCATGCGTGGTGGTGGTGTGTGGANACGATGATATTGGTGTCGGCNGTGTATCATTTCAGTTGCCGATCGATTTACGGCTGATGGTGTCGTTGACCATACAACTGTTTGGTGACTGAGGGAAATATATGTAACGTGTGTCCATCGGTAAAaaaaaaa]




>consensus_5007#0
AGCCAATCGGTCCCCACGCTTACAAGCTACAACTTCACCTCACCCCTGCTGCATTCTCGC
GTCCCAAGTTACAATCCATCAATGGCGGCTTCCACTTCCGCCGCGGTTAAGATGGCCGCC
GCCGTCCTCTGCCTGATGGTCGCCCTCTCCGTCGCCGCCGGGCAGCTCACGACGACGGCC
GCCGCCGCCACCTCCACGCGCGTGGATGATCACGTCGTCGAGGACGACGACGACGCGACG
CCGACGACGCTGCAGCAGCTGGAGACGCGCCTCGCCGACGATCAGGACCTCGCCGACCTC
CTCGACGGCGGCGACGGCGCCGCCACCATCTGCCCCAGCAACTGCCAGAAGTGCCTGGTC
AAGTGCGCGGGCACCTGCGTCGCCGACATCGTCAGCCCGCCCACCTTCGTCGCCTGCTTC
CTCAAGTGCGCCGTCGTCAAGCTCTGCTTCGCCAAGGTTTGATCATCATCGCGTCGGCGG
CCGGCCGGCGATGGTCGACGGCGGCGCCGGTGCCGCTTGATTGCTTGCCTTGTTGTCTTG
CTAGCTCGTGTCTACGTACTCCCTCCGTACCTATATATTTAACACCGTTAATTTTTTTAA
TATATTTGACAGTTTATCTTATTAAAAAAATAAAAAAATATTTTTTTCTTATTATTAAAT
ATGTTTTTATTATATATATAGTTTTACATATTTAAAAAAATTAAATAAAATAAACGATTA
AATATATTTAAATAAATTAACGGCGTTAAATATTTAAAAACGGAGGGAGTAGTCGAGGTC
GCCATGCGTGCACTCCTGCATGCATGCATGCGTGGTGGTGGTGTGTGGAGACGATGATAT
TGGTGTCGCGTGTATCATTTCAGTTGCCGATCGATTTACGGCTGATGGTGTCGTTGACCA
CACAACTGTTTGGTGACTGAGGGAAATATATGTAACGTGTGTCCATCGGTAAAGATGTAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)