These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1127 fasta sequence [CACCCCCGCCGGCCGAGTCCCTCCGCCGTACGTCCGGCCGGCGATGCACCACCGCGACGCGACGGAATCATCACGCGGATCTCCCCTCTTCCCCAACCCAAACCTGACGCTGTGAATTTAATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATACAAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGGATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAGAGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGCTCCACCCTCTCCGGACCAAGATGATCACGGCGGGGTGCCTCGCCGGCGTCAGCGACTCCGTGGCGCAGAAGCTCTCCGGCTACCAGAGGATCGAGAAGCGCCGCCTCCTGCTCAAGATGCTCTTTGGGTTTGCTTATGGTGGCCCTTTTGGCCATTTCCTCCATAAAGTGTTAGATTATATCTTCAAAGGGAAGAAGGATACCAAAACTATAGCCAAGAAGGTGTTACTGGAGCAGATCACTTCTTCTCCCTGGAATAATCTGCTCTTCTTGTTCTATTATGGATATGTTGTTGAGAGGAGGCCTTTTAAGGAGGTGAAGACCAGGGTTAAGAAACAATATCCCTCGGTGCAGTTGTCTGCTTGGATGTTTTGGCCAATAGTTGGTTGGATAAATCATATGTACATGCCGTTGCAGTTCCGGGTGATTTTCCACAGCTTTGTTGCATGTTGCTGGGGGATATTTCTTAACCTTCGTGCAAGGGCCATGTCTTTGAAGCAGTCGTAGAGAATTTAGTAGGAAAAAATTGCAGCACCTCTCCAACTTGATTCTTACTGACTAAAGAACAAGGATGCTGAGTGCTACGCAATATGCAGTTAGCAACAAATTGTTACGAGTGGTTTGGGATTTCGAGTATTTATCTGGTGTTTAGTTGGGTTTGTTTGTCAGCAAATGCGAGATTGTTAACAAAGGTATTCTGTTGACACCGGTTATGACTTATGATGAACCCAAAGTATGATTTGATATCTATGGATGAGCTTGGCCTGC] [+] EMBL AK121976 [CACCCCCGCCGGCCGAGTCCCTCCGCCGTACGTCCGGCCGGCGATGCACCACCGCGACGCGACGGAATCATCACGCGGATCTCCCCTCTTCCCCAACCCAAACCTGACGCTGTGAATTTAATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATACAAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGGATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAGAGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGCTCCACCCTCTCCGGACCAAGATGATCACGGCGGGGTGCCTCGCCGGCGTCAGCGACTCCGTGGCGCAGAAGCTCTCCGGCTACCAGAGGATCGAGAAGCGCCGCCTCCTGCTCAAGATGCTCTTTGGGTTTGCTTATGGTGGCCCTTTTGGCCATTTCCTCCATAAAGTGTTAGATTATATCTTCAAAGGGAAGAAGGATACCAAAACTATAGCCAAGAAGGTGTTACTGGAGCAGATCACTTCTTCTCCCTGGAATAATCTGCTCTTCTTGTTCTATTATGGATATGTTGTTGAGAGGAGGCCTTTTAAGGAGGTGAAGACCAGGGTTAAGAAACAATATCCCTCGGTGCAGTTGTCTGCTTGGATGTTTTGGCCAATAGTTGGTTGGATAAATCATATGTACATGCCGTTGCAGTTCCGGGTGATTTTCCACAGCTTTGTTGCATGTTGCTGGGGGATATTTCTTAACCTTCGTGCAAGGGCCATGTCTTTGAAGCAGTCGTAGAGAATTTAGTAGGAAAAAATTGCAGCACCTCTCCAACTTGATTCTTACTGACTAAAGAACAAGGATGCTGAGTGCTACGCAATATGCAGTTAGCAACAAATTGTTACGAGTGGTTTGGGATTTCGAGTATTTATCTGGTGTTTAGTTGGGTTTGTTTGTCAGCAAATGCGAGATTGTTAACAAAGGTATTCTGTTGACACCGGTTATGACTTATGATGAACCCAAAGTATGATTTGATATCTATGGATGAGCTTGGCCTGC] consensusID : consensus_501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [AACCTGACGCTGTGAATTTAATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATACAAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGGATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAGAGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGCTCCACCCTCTCCGGACCAAGGTGCGTTCTTGTTTCGCTCCTCGATTCGATTGGTTTTCTGCGCGCGCGGGATTGTTTGCTCAATTTTTGGGGGATTGCGTGCAGATGATCACGGCGGGGTGCCTCGCCGGCGTCAGCGACTCCGTGGCGCAGAAGCTCTCCGGCTACCAGAGGATCGAGAAGCGCCGCCTCCTGCTCAAGATGGTACGGACCTGTGCTTGTGCTAGTTTCCTGCCTTCCTGCGGGG] [-] EMBL CB000951 [AACCTGACGCTGTGAATTTAATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATACAAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGGATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAGAGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGCTCCACCCTCTCCGGACCAAGGTGCGTTCTTGTTTCGCTCCTCGATTCGATTGGTTTTCTGCGCGCGCGGGATTGTTTGCTCAATTTTTGGGGGATTGCGTGCAGATGATCACGGCGGGGTGCCTCGCCGGCGTCAGCGACTCCGTGGCGCAGAAGCTCTCCGGCTACCAGAGGATCGAGAAGCGCCGCCTCCTGCTCAAGATGGTACGGACCTGTGCTTGTGCTAGTTTCCTGCCTTCCTGCGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_501#0 CACCCCCGCCGGCCGAGTCCCTCCGCCGTACGTCCGGCCGGCGATGCACCACCGCGACGC 60 consensus_501#1 ------------------------------------------------------------ consensus_501#0 GACGGAATCATCACGCGGATCTCCCCTCTTCCCCAACCCAAACCTGACGCTGTGAATTTA 120 consensus_501#1 ----------------------------------------AACCTGACGCTGTGAATTTA 20 ******************** consensus_501#0 ATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATAC 180 consensus_501#1 ATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATAC 80 ************************************************************ consensus_501#0 AAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGG 240 consensus_501#1 AAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGG 140 ************************************************************ consensus_501#0 ATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAG 300 consensus_501#1 ATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAG 200 ************************************************************ consensus_501#0 AGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGC 360 consensus_501#1 AGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGC 260 ************************************************************ consensus_501#0 TCCACCCTCTCCGGACCAAGATGATCACGGCGGGGTGCCTCGCCGGCGTCAGCGACTCCG 420 consensus_501#1 TCCACCCTCTCCGGACCAAGGTG--CGTTCTTGTTTCGCTCCTCGATTCGATTGGTTTTC 318 ******************** ** * * * *** ** * * * consensus_501#0 TG-GCGCAGAAGCTCTCCGGCTACCAGAGGATCGAGAAGCGCCGCCTCCTGCTCAAGATG 479 consensus_501#1 TGCGCGCGCGGGATTGTTTGCT--CAATTTTTGGGGGATTGCGTGCAGATGATCACGGCG 376 ** **** * * *** ** * * * * ** * ** *** * * consensus_501#0 CTCTTTGGGTTTGCTTATGGTGGCCCTTTTGGCCATTTCCTCCATAAAGTGTTAGATTAT 539 consensus_501#1 ------GGG--TGCCT-CGCCGGCGTCAGCGACTCCGTGGCGCAGAAGCTCTCCGGCTAC 427 *** *** * * *** * * * ** ** * * * ** consensus_501#0 ATCTTCAAAGGGAAGAAGGATACCAAAACTATAGCCAAGAAGGTGTTACTGGAGCAGATC 599 consensus_501#1 -----CAGAGGATCGAGAAGCGCCGCCTCC-TGCTCAAGATGGTA---------CGGACC 472 ** *** ** ** * * ***** *** * ** * consensus_501#0 ACTTCTTCTCCCTGGAATAATCTGCTCTTCTTGTTCTATTATGGATATGTTGTTGAGAGG 659 consensus_501#1 TGTGCTTGTGCT---AGTTTCCTGC-CTTCCTGCGGGG---------------------- 506 * *** * * * * **** **** ** consensus_501#0 AGGCCTTTTAAGGAGGTGAAGACCAGGGTTAAGAAACAATATCCCTCGGTGCAGTTGTCT 719 consensus_501#1 ------------------------------------------------------------ consensus_501#0 GCTTGGATGTTTTGGCCAATAGTTGGTTGGATAAATCATATGTACATGCCGTTGCAGTTC 779 consensus_501#1 ------------------------------------------------------------ consensus_501#0 CGGGTGATTTTCCACAGCTTTGTTGCATGTTGCTGGGGGATATTTCTTAACCTTCGTGCA 839 consensus_501#1 ------------------------------------------------------------ consensus_501#0 AGGGCCATGTCTTTGAAGCAGTCGTAGAGAATTTAGTAGGAAAAAATTGCAGCACCTCTC 899 consensus_501#1 ------------------------------------------------------------ consensus_501#0 CAACTTGATTCTTACTGACTAAAGAACAAGGATGCTGAGTGCTACGCAATATGCAGTTAG 959 consensus_501#1 ------------------------------------------------------------ consensus_501#0 CAACAAATTGTTACGAGTGGTTTGGGATTTCGAGTATTTATCTGGTGTTTAGTTGGGTTT 1019 consensus_501#1 ------------------------------------------------------------ consensus_501#0 GTTTGTCAGCAAATGCGAGATTGTTAACAAAGGTATTCTGTTGACACCGGTTATGACTTA 1079 consensus_501#1 ------------------------------------------------------------ consensus_501#0 TGATGAACCCAAAGTATGATTTGATATCTATGGATGAGCTTGGCCTGC 1127 consensus_501#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||