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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1492 fasta sequence
[CTCAATTAAACTCCACTAAACCTCCCTATGGCCTATGCCATCCACCAAACAAGCAACTGAATCGGAATCGCGTATTGCTTTCGAGCTCCAATTCAACAGATTAGCAGAACACAGGGCGCTGAGCTGATGGCGAATTGTGGCCGGAGGTTTGCCGCCGCCGGCGCTCCGGCGACGGCGAGACGGTGTAATCTGGAGCTGTTCCTCGAGGCCACCACGCCGGTTGTCCCGACGACAGCCTGCTCCTCCAAGAAGAGCATGAATGGTTGGAAGCAATCTGATGAAGAAAATGCGCTGCCATTCTTCAGTTTGGGCGACCTCTGGGATGGGTTCAGAGAGAGCAGCGCATATGGTATCGCTGTGCCAATTGTTCTGAATGGTTGCAGTGACGGTGTGGTGCAGTATTACGTCCCTTACTTATCTGCAATCCAGCTTTATGGAAGATTAAGGAGGCATTTCTACCATTCCAGGCCAAGTGGAGAAGACAGCGACGGCGACTACTGTCAAGACACAGGCAGTGAAGAGATGAGCGACCTTGAGCACGACTCATGTCCAAGCAGCACGGATGCGTTCTCAGTCCAAGATACCACCTGCGAAACCTCCACCAGCGAAGCATCGAGCGACGAAAGCGAATCAACGAGAATTTCCCACGAGCAGCTCATCTTCGAGTTTCTGGAATCCGAGCCTCCCTACCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGCCAGGGGATTTCCGGAGCTGAATACTCTCAGGAGCTGTGATTTGTCGCCAACCAGTTGGATGTCCGTCGCATGGTATCCAATATACCGAATTCCGACGGGACCAACACTATGCGATCTGGACGCCTGCTTCCTCACATATCATCCCCTCTCCACGCAGCTCACAGGCGGCATCTGCCCGGAGCCAAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCCCGACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAGACAGGCAGCTGGTCGCCTCCCTCTCGCACGCCGCCG-ACGCCTGGCTCGGCCTCCTCGGAGTTCACCACCCGGATCACCGCTTCTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAGTCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTTTTTTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGTTGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAACCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGGTCTAGTGTTTATGTTTAAACGTGATATTTTGTTGTACCAAAACTCAGATACGAGTAACACTCAAGCAGCTGGTGTACTTCTGTTGTACTGCTTCTAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK073435 [CTCAATTAAACTCCACTAAACCTCCCTATGGCCTATGCCATCCACCAAACAAGCAACTGAATCGGAATCGCGTATTGCTTTCGAGCTCCAATTCAACAGATTAGCAGAACACAGGGCGCTGAGCTGATGGCGAATTGTGGCCGGAGGTTTGCCGCCGCCGGCGCTCCGGCGACGGCGAGACGGTGTAATCTGGAGCTGTTCCTCGAGGCCACCACGCCGGTTGTCCCGACGACAGCCTGCTCCTCCAAGAAGAGCATGAATGGTTGGAAGCAATCTGATGAAGAAAATGCGCTGCCATTCTTCAGTTTGGGCGACCTCTGGGATGGGTTCAGAGAGAGCAGCGCATATGGTATCGCTGTGCCAATTGTTCTGAATGGTTGCAGTGACGGTGTGGTGCAGTATTACGTCCCTTACTTATCTGCAATCCAGCTTTATGGAAGATTAAGGAGGCATTTCTACCATTCCAGGCCAAGTGGAGAAGACAGCGACGGCGACTACTGTCAAGACACAGGCAGTGAAGAGATGAGCGACCTTGAGCACGACTCATGTCCAAGCAGCACGGATGCGTTCTCAGTCCAAGATACCACCTGCGAAACCTCCACCAGCGAAGCATCGAGCGACGAAAGCGAATCAACGAGAATTTCCCACGAGCAGCTCATCTTCGAGTTTCTGGAATCCGAGCCTCCCTACCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGCCAGGGGATTTCCGGAGCTGAATACTCTCAGGAGCTGTGATTTGTCGCCAACCAGTTGGATGTCCGTCGCATGGTATCCAATATACCGAATTCCGACGGGACCAACACTATGCGATCTGGACGCCTGCTTCCTCACATATCATCCCCTCTCCACGCAGCTCACAGGCGGCATCTGCCCGGAGCCAAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCCCGACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAGACAGGCAGCTGGTCGCCTCCCTCTCGCACGCCGCCG ACGCCTGGCTCGGCCTCCTCGGAGTTCACCACCCGGATCACCGCTTCTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAGTCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTTTTTTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGTTGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAACCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGGTCTAGTGTTTATGTTTAAACGTGATATTTTGTTGT ]
[-] EMBL CF304104 [ AAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCCCGACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAGACAGGCAGNTGGTCGCCTCCCTTTCGCACGCCGCCGAACGCCTGGCTCGGCCTCCTCGGAGTTCACCACCCGGATCACCGCTTTTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAGTCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTTTTTTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGTTGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAACCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGGTCTAGTGTTTATGTTTAAACGTGATATTTTGTTGTACCAAAACTCAGATACGAGTAACACTCAAGCAGCTGGTGTACTTCTGTTGTACTGCTTCTAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_5011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence
[CCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGACATGGTATTCCCGGAGCTGACTACTCTCAGGAGCTATGATTTATCGCCAACCAGGTTGGATGTCCGTCGCATGGTATCCAAGATACCGAATTCCTACGGGACCAGCACCTATGCGATCTCGACTGCAGATTCCTAAA]
[+] EMBL AA750601 [CCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGACATGGTATTCCCGGAGCTGACTACTCTCAGGAGCTATGATTTATCGCCAACCAGGTTGGATGTCCGTCGCATGGTATCCAAGATACCGAATTCCTACGGGACCAGCACCTATGCGATCTCGACTGCAGATTCCTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5011#0 CTCAATTAAACTCCACTAAACCTCCCTATGGCCTATGCCATCCACCAAACAAGCAACTGA 60
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 ATCGGAATCGCGTATTGCTTTCGAGCTCCAATTCAACAGATTAGCAGAACACAGGGCGCT 120
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 GAGCTGATGGCGAATTGTGGCCGGAGGTTTGCCGCCGCCGGCGCTCCGGCGACGGCGAGA 180
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 CGGTGTAATCTGGAGCTGTTCCTCGAGGCCACCACGCCGGTTGTCCCGACGACAGCCTGC 240
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 TCCTCCAAGAAGAGCATGAATGGTTGGAAGCAATCTGATGAAGAAAATGCGCTGCCATTC 300
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 TTCAGTTTGGGCGACCTCTGGGATGGGTTCAGAGAGAGCAGCGCATATGGTATCGCTGTG 360
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 CCAATTGTTCTGAATGGTTGCAGTGACGGTGTGGTGCAGTATTACGTCCCTTACTTATCT 420
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 GCAATCCAGCTTTATGGAAGATTAAGGAGGCATTTCTACCATTCCAGGCCAAGTGGAGAA 480
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 GACAGCGACGGCGACTACTGTCAAGACACAGGCAGTGAAGAGATGAGCGACCTTGAGCAC 540
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 GACTCATGTCCAAGCAGCACGGATGCGTTCTCAGTCCAAGATACCACCTGCGAAACCTCC 600
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 ACCAGCGAAGCATCGAGCGACGAAAGCGAATCAACGAGAATTTCCCACGAGCAGCTCATC 660
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 TTCGAGTTTCTGGAATCCGAGCCTCCCTACCAGCGTGAACCGCTAGCTGACAAGATTTGT 720
consensus_5011#1 -----------------------------CCAGCGTGAACCGCTAGCTGACAAGATTTGT 31
*******************************
consensus_5011#0 AGTCTTGCCAGGGGATTTCCGGAGCTGAATACTCTCAGGAGCTGTGATTTGTCGCCAACC 780
consensus_5011#1 AGTCTTGACATGGTATTCCCGGAGCTGACTACTCTCAGGAGCTATGATTTATCGCCAACC 91
******* ** ** *** ********** ************** ****** *********
consensus_5011#0 AG-TTGGATGTCCGTCGCATGGTATCCAATATACCGAATTCCGACGGGACCAACAC-TAT 838
consensus_5011#1 AGGTTGGATGTCCGTCGCATGGTATCCAAGATACCGAATTCCTACGGGACCAGCACCTAT 151
** ************************** ************ ********* *** ***
consensus_5011#0 GCGATCTGGACGCCTGCTTCCTCACATATCATCCCCTCTCCACGCAGCTCACAGGCGGCA 898
consensus_5011#1 GCGATCTCGACTGCAGATTCCTAAA----------------------------------- 176
******* *** * * ***** *
consensus_5011#0 TCTGCCCGGAGCCAAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCC 958
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 CGACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAG 1018
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 ACAGGCAGCTGGTCGCCTCCCTCTCGCACGCCGCCGACGCCTGGCTCGGCCTCCTCGGAG 1078
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 TTCACCACCCGGATCACCGCTTCTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAG 1138
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 TCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTT 1198
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 TTTTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGT 1258
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 TGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAA 1318
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 CCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGG 1378
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 TCTAGTGTTTATGTTTAAACGTGATATTTTGTTGTACCAAAACTCAGATACGAGTAACAC 1438
consensus_5011#1 ------------------------------------------------------------
consensus_5011#0 TCAAGCAGCTGGTGTACTTCTGTTGTACTGCTTCTAAAAAAAAAAAAAAAAAAA 1492
consensus_5011#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||