These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 920 fasta sequence [CCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCTCGCCACACCCAAGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGCCGCCGGCGCGGCCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTCGTGTTCGCCTCCCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCCTCCTCCCCGCGCCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACCGTCGCTGCGTCCGCGGTTGTTCTTTCTGCATGCTTTGTATTCCTTTCAGCAATGCGCTCCATGTTGGAATGCAAGAAGGCAGCAGAATCTCTTGAGAAGTCCTTCGGTTCAGCAAGAGAGAAGCTTCCTGAAACCATGGCTTCAGTGAAACTAGTTGGAAGGGAGATCTGTGACTTGGCTGTGGATCTCAGTAATCTAAGTCAAGAATTGAGGAAGGGCGTCCAAAGTTCCATGAGCGTTGTTCATGCAGCCGATGCTCAACTGCACCAACTGACGACCTCTGCCCCACAAGGAAATCAGAGGGTGACTAGTAATCGAAAGAGAGCAGCAGGAGAGCCTTTGCTCGCTAGTACCGTGAGAGAACTCCGTGAGTTAATTGCAGAATTACACTCAGGATTTGGAGTAGCCGTCAGCATCGCGGGCCTTTTAACGTGGGCATCAAATTTTGTTTCTAAGCGTCCTAAGAATCGCTCATAGCGAGACACAGAAAGTAGATAGAGGCCATGAGGGCTTCTGGCCGGTGTAAGTGATACTGAATCATTTTGCTTGAAGTTAGATCATGATCATTTATCCTGGGTTCATGAATTATGATGAGTTCATGGATTATGAAGATTGGCTTTCAAATGAAAAT] [+] EMBL AK109268 [CCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCTCGCCACACCCAAGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGCCGCCGGCGCGGCCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTCGTGTTCGCCTCCCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCCTCCTCCCCGCGCCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACCGTCGCTGCGTCCGCGGTTGTTCTTTCTGCATGCTTTGTATTCCTTTCAGCAATGCGCTCCATGTTGGAATGCAAGAAGGCAGCAGAATCTCTTGAGAAGTCCTTCGGTTCAGCAAGAGAGAAGCTTCCTGAAACCATGGCTTCAGTGAAACTAGTTGGAAGGGAGATCTGTGACTTGGCTGTGGATCTCAGTAATCTAAGTCAAGAATTGAGGAAGGGCGTCCAAAGTTCCATGAGCGTTGTTCATGCAGCCGATGCTCAACTGCACCAACTGACGACCTCTGCCCCACAAGGAAATCAGAGGGTGACTAGTAATCGAAAGAGAGCAGCAGGAGAGCCTTTGCTCGCTAGTACCGTGAGAGAACTCCGTGAGTTAATTGCAGAATTACACTCAGGATTTGGAGTAGCCGTCAGCATCGCGGGCCTTTTAACGTGGGCATCAAATTTTGTTTCTAAGCGTCCTAAGAATCGCTCATAGCGAGACACAGAAAGTAGATAGAGGCCATGAGGGCTTCTGGCCGGTGTAAGTGATACTGAATCATTTTGCTTGAAGTTAGATCATGATCATTTATCCTGGGTTCATGAATTATGATGAGTTCATGGATTATGAAGATTGGCTTTCAAATGAAAAT] consensusID : consensus_5015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence [CCAGATATATGGTTTTATGGTTCGAGGACGATTTTGTAACTCATGACAAGTTGAGATACCTTCGATGGAGTACTTTATTTTCCTTTCAGTTTCCACCCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCTCGCCACACCCAAGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGCCGCCGGCGCGGCCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTCGTGTTCGCCTCCCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCCTCCTCCCCGCGCCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACCGTCGCTGCGTCCGCGGTACGGCCCCCCTTGCTCCCAACCCTCACACATCTCATATCGCCTTCTCAATCCAGCGACATGACACTGGGGTAGCCTCCGGTAGCGATGGCAGCATGACGGCGTTGCTGCTTTGAAGGCGCAAGATTGATATGCGTAACGTGGTTTTGAAAGCGGGTTCTTGGCCAGCTTTTGCATCTGTGGATGGATGGATACTCTCTCCCCCCTGTGAAGAGTAAACAGCGGGTGGAACTGAAAACTTATCTGAATCGAAACTCATGATATGCTTTTAAGCTGTCGGTTTTGAATATGAATTAGAAACTGAAATGCCAATGAAACAGCATAATGTGATAAGGGTTTAAGGTTGGTTTTTCCACTCTATTTGAATCTATTATTTAGTACTAGTATCACATGTCTACCAAAAACAAAAAAGTTCTCCATT] [+] EMBL AK108638 [CCAGATATATGGTTTTATGGTTCGAGGACGATTTTGTAACTCATGACAAGTTGAGATACCTTCGATGGAGTACTTTATTTTCCTTTCAGTTTCCACCCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCTCGCCACACCCAAGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGCCGCCGGCGCGGCCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTCGTGTTCGCCTCCCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCCTCCTCCCCGCGCCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACCGTCGCTGCGTCCGCGGTACGGCCCCCCTTGCTCCCAACCCTCACACATCTCATATCGCCTTCTCAATCCAGCGACATGACACTGGGGTAGCCTCCGGTAGCGATGGCAGCATGACGGCGTTGCTGCTTTGAAGGCGCAAGATTGATATGCGTAACGTGGTTTTGAAAGCGGGTTCTTGGCCAGCTTTTGCATCTGTGGATGGATGGATACTCTCTCCCCCCTGTGAAGAGTAAACAGCGGGTGGAACTGAAAACTTATCTGAATCGAAACTCATGATATGCTTTTAAGCTGTCGGTTTTGAATATGAATTAGAAACTGAAATGCCAATGAAACAGCATAATGTGATAAGGGTTTAAGGTTGGTTTTTCCACTCTATTTGAATCTATTATTTAGTACTAGTATCACATGTCTACCAAAAACAAAAAAGTTCTCCATT] consensusID : consensus_5015#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence [AGCGTCCTAAGAATCGCTCATAGCGAGACACAGAAAGTAGATAGAGGTCATGAGGGCTTCTGGCCGGTGTAAGTGATACTGAATCATTTTGCTTGAAGTTAGATCATGATCATTTATCCTGGGTTCATGAANAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF333532 [AGCGTCCTAAGAATCGCTCATAGCGAGACACAGAAAGTAGATAGAGGTCATGAGGGCTTCTGGCCGGTGTAAGTGATACTGAATCATTTTGCTTGAAGTTAGATCATGATCATTTATCCTGGGTTCATGAANAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5015#0 CCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCTCGCCACACCCA 60 consensus_5015#2 ------------------------------------------------------------ consensus_5015#1 ------------------------------------------------------------ consensus_5015#0 AGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGCCGCCGGCGCGG 120 consensus_5015#2 ------------------------------------------------------------ consensus_5015#1 -----------------------------------CCAGATATATGGTTTTATGGTTCGA 25 consensus_5015#0 CCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTCGTGTTCGCCTC 180 consensus_5015#2 ------------------------------------------------------------ consensus_5015#1 GGACGATTTTGTAACTCATGACAAGTTGAGATACCTTCGATGGAGTACTTTATTTTCCTT 85 consensus_5015#0 CCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCCTCCTCCCCGCG 240 consensus_5015#2 ------------------------------------------------------------ consensus_5015#1 TCAGTTTCCACCCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCT 145 consensus_5015#0 CCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACCGTCGCTGCGTC 300 consensus_5015#2 ------------------------------------------------------------ consensus_5015#1 CGCCACACCCAAGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGC 205 consensus_5015#0 CGCGGTTGTTCTTTCTGCATGCTTTGTATTCCTTTCAGCAATGCGCTCCATGTTGGAATG 360 consensus_5015#2 ------------------------------------------------------------ consensus_5015#1 CGCCGGCGCGGCCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTC 265 consensus_5015#0 CAAGAAGGCAGCAGAATCTCTTGAGAAGTCCTTCGGTTCAGCAAGAGAGAAGCTTCCTGA 420 consensus_5015#2 ------------------------------------------------------------ consensus_5015#1 GTGTTCGCCTCCCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCC 325 consensus_5015#0 AACCATGGCTTCAGTGAAACTAGTTGGAAGGGAGATCTGTGACTTGGCTGTGGATCTCAG 480 consensus_5015#2 ------------------------------------------------------------ consensus_5015#1 TCCTCCCCGCGCCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACC 385 consensus_5015#0 TAATCTAAGTCAAGAATTGAGGAAGGGCGTCCAAAGTTCCATGAGCGTTGTTCATGCAGC 540 consensus_5015#2 ------------------------------------------------------------ consensus_5015#1 GTCGCTGCGTCCGCGGTACGGCCCCCCTTGCTCCCAACCCTCACACATCTCATATCGCCT 445 consensus_5015#0 CGATGCTCAACTGCACCAACTGACGACCTCTGCCCCACAAGGAAATCAGAGGGTGACTAG 600 consensus_5015#2 ------------------------------------------------------------ consensus_5015#1 TCTCAATCCAGCGACATGACACTGGGGTAGCCTCCGGTAGCGATGGCAGCATGACGGCGT 505 consensus_5015#0 TAATCGAAAGAGAGCAGCAGGAGAGCCTTTGCTCGCTAGTACCGTGAGAGAACTCCGTGA 660 consensus_5015#2 ------------------------------------------------------------ consensus_5015#1 TGCTGCTTTGAAGGCGCAAGATTGATATGCGTAACGTGGTTTTGAAAGCGGGTTCTTGGC 565 consensus_5015#0 -GTTAATTGCAGAATTACACTCAGGATTTGGAGTAGCCGTCAGCATCGCGGGCCTTTTAA 719 consensus_5015#2 ------------------------------------------------------------ consensus_5015#1 CAGCTTTTGCATCTGTGGATGGATGGATACTCTCTCCCCCCTGTGAAGAGTAAACAGCGG 625 consensus_5015#0 CGTGGGCATCAAATTTTGTTTCTAAGCGTCCTAAGAATCGCTCATA----GCGAGACACA 775 consensus_5015#2 ------------------------AGCGTCCTAAGAATCGCTCATA----GCGAGACACA 32 consensus_5015#1 GTGGAACTGAAAACTTATCTGAATCGAAACTCATGATATGCTTTTAAGCTGTCGGTTTTG 685 * * * ** *** ** * * consensus_5015#0 GAAAGTAGATAGAGGCCATGAGGGCTTCTGGCCGGTGTAA-GTGATACTGAATCA---TT 831 consensus_5015#2 GAAAGTAGATAGAGGTCATGAGGGCTTCTGGCCGGTGTAA-GTGATACTGAATCA---TT 88 consensus_5015#1 AATATGAATTAGAAACTGAAATGCCAATGAAACAGCATAATGTGATAAGGGTTTAAGGTT 745 * * * **** * * * * * *** ****** * * * ** consensus_5015#0 TTGCTTGAAGTTAGATCATGATCATTTATCCTGGGTTCATGAATTATGATGAGTTCATGG 891 consensus_5015#2 TTGCTTGAAGTTAGATCATGATCATTTATCCTGGGTTCATGAANAAAAAAAAAAAAAAAA 148 consensus_5015#1 GGTTTTTCCACTCTATTTGAATCTATTATTTAGTACTAGTATCACATGTCTACCAAAAAC 805 ** * ** *** **** * * * * * * consensus_5015#0 ATTATGAAGATTGGCTTTCAAATGAAAAT 920 consensus_5015#2 AAAAAAAAAA------------------- 158 consensus_5015#1 AAAAAAGTTCTCCATT------------- 821 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||