These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5023#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1367 fasta sequence [TTCCCCGCGAAAATATTTATACGGGGGCCGCGCCCGCGGCGCGAGTCGTCGCTGCTCCCACTCATCCGCCAACCGGTTGCCCCCGAATCCCGACGAACCTTCGCTGCTCCCGGGTGGTGCTGTTAGCAACAACAGGCATCAAATAATGTCGATGAGCTATGACGGGGATCAAAGCGAGGACCGGCAAAGCGAAGAGGTTCAATCAGCATATAAAAGTCACGGTGGGGGTGTGTTAAGGGGGTATTTTAATTTGGATAGGTCTGAAGAGCAAAATGAAGAAAATGAGTGGAGTTGGATTCCTCAAGATGGTGATCCTCTAGCTGAATCAATGTCTTCGCTTCAGACGACACAAGAAGCTCTTGAGAATGAGATGCAAAAACTGTCAGATCTTAGCAAGGAGTTAGGGGCTGACAACTTCAGCAGTGATAACAGAGCAAACAACGCATTCGTTTCGCCTGATGAGGACGATGTTCTTGAAACGAATCAAAAGATGAGCCATCTAGAACAGAAACTGGAAGAGGCGTCAAACACTATCAGAGAGAAGAACTCGGTATTATCACAACTTCAAGAACTCATCGACGGCATGCACATAGCAACACCGGCGGAGAGGGCCTTCGACATCGATCAGCTGGAGACGGACCTCGACCGCCAGCTCCAGGAGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGGTCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACAATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGGAGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGAGGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCCTCTTCGGCCTCCTCCAGCTCGTCCTGCTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGGTCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCAAAGGCCTGATGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAATTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTCATGT-AAAAAAATGTCAGTTTGTGCATAAACTAGCCATCAGTCCTGTCCATTATAGGCCGAGCACGAGAACAGCAGTAAAAAATTTCCTTGGCTGACGATGAAAACGGTCGAAACTGTAGCATGTCTATTCGAAAAATGACTCTTGGTCGGTCGGAAATAAATTATATT] [+] EMBL AK069769 [TTCCCCGCGAAAATATTTATACGGGGGCCGCGCCCGCGGCGCGAGTCGTCGCTGCTCCCACTCATCCGCCAACCGGTTGCCCCCGAATCCCGACGAACCTTCGCTGCTCCCGGGTGGTGCTGTTAGCAACAACAGGCATCAAATAATGTCGATGAGCTATGACGGGGATCAAAGCGAGGACCGGCAAAGCGAAGAGGTTCAATCAGCATATAAAAGTCACGGTGGGGGTGTGTTAAGGGGGTATTTTAATTTGGATAGGTCTGAAGAGCAAAATGAAGAAAATGAGTGGAGTTGGATTCCTCAAGATGGTGATCCTCTAGCTGAATCAATGTCTTCGCTTCAGACGACACAAGAAGCTCTTGAGAATGAGATGCAAAAACTGTCAGATCTTAGCAAGGAGTTAGGGGCTGACAACTTCAGCAGTGATAACAGAGCAAACAACGCATTCGTTTCGCCTGATGAGGACGATGTTCTTGAAACGAATCAAAAGATGAGCCATCTAGAACAGAAACTGGAAGAGGCGTCAAACACTATCAGAGAGAAGAACTCGGTATTATCACAACTTCAAGAACTCATCGACGGCATGCACATAGCAACACCGGCGGAGAGGGCCTTCGACATCGATCAGCTGGAGACGGACCTCGACCGCCAGCTCCAGGAGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGGTCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACAATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGGAGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGAGGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCCTCTTCGGCCTCCTCCAGCTCGTCCTGCTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGGTCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCAAAGGCCTGATGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAATTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTCATGT AAAAAAATGT ] [-] EMBL CB659025 [ CAACACCGGCGGAGAGGGCCTTCGACATCGATCAGCTGGAGACGGACCTCGACCGCCAGCTCCAGGAGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGGTCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACAATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGGAGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGAGGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCCTCTTCGGCCTCCTCCAGCTCGTCCTGCTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGGTCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCAAAGGCCTGATGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAATTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTCATGTAAAAAAAATGTCAGTTTGTGCATAAACTAGCCATCAGTCCTGTCCATTATAGGCCGAGCACGAGAACAGCAGTAAAAAATTTCCTTGGCTGACGATGAAAACGGTCGAAACTGTAGCATGTCTATTCGAAAAATGACTCTTGGTCGGTCGGAAATAAATTATATT] consensusID : consensus_5023#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [GGGGGAAAGGGCCTTCGACATCGATCAGCTGAAAACGGACCTCGACCCGCAAGCTCCAGGAGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGGTCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACAATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGGAGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGAGGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCCTCTTCGGCCTCCTCCAGCTCGTCCTACTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGGTCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCGAAGGCCTGATGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAATTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTCTTGTAAAAAAAATGTCAGTTTGTGCATAAAACTAGCCATCAGTCCTGTCCATTAAAAAAAAAAAA] [-] EMBL CA760526 [GGGGGAAAGGGCCTTCGACATCGATCAGCTGAAAACGGACCTCGACCCGCAAGCTCCAGGAGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGGTCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACAATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGGAGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGAGGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCCTCTTCGGCCTCCTCCAGCTCGTCCTACTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGGTCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCGAAGGCCTGATGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAATTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTCTTGTAAAAAAAATGTCAGTTTGTGCATAAAACTAGCCATCAGTCCTGTCCATTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5023#0 TTCCCCGCGAAAATATTTATACGGGGGCCGCGCCCGCGGCGCGAGTCGTCGCTGCTCCCA 60 consensus_5023#1 ------------------------------------------------------------ consensus_5023#0 CTCATCCGCCAACCGGTTGCCCCCGAATCCCGACGAACCTTCGCTGCTCCCGGGTGGTGC 120 consensus_5023#1 ------------------------------------------------------------ consensus_5023#0 TGTTAGCAACAACAGGCATCAAATAATGTCGATGAGCTATGACGGGGATCAAAGCGAGGA 180 consensus_5023#1 ------------------------------------------------------------ consensus_5023#0 CCGGCAAAGCGAAGAGGTTCAATCAGCATATAAAAGTCACGGTGGGGGTGTGTTAAGGGG 240 consensus_5023#1 ------------------------------------------------------------ consensus_5023#0 GTATTTTAATTTGGATAGGTCTGAAGAGCAAAATGAAGAAAATGAGTGGAGTTGGATTCC 300 consensus_5023#1 ------------------------------------------------------------ consensus_5023#0 TCAAGATGGTGATCCTCTAGCTGAATCAATGTCTTCGCTTCAGACGACACAAGAAGCTCT 360 consensus_5023#1 ------------------------------------------------------------ consensus_5023#0 TGAGAATGAGATGCAAAAACTGTCAGATCTTAGCAAGGAGTTAGGGGCTGACAACTTCAG 420 consensus_5023#1 ------------------------------------------------------------ consensus_5023#0 CAGTGATAACAGAGCAAACAACGCATTCGTTTCGCCTGATGAGGACGATGTTCTTGAAAC 480 consensus_5023#1 ------------------------------------------------------------ consensus_5023#0 GAATCAAAAGATGAGCCATCTAGAACAGAAACTGGAAGAGGCGTCAAACACTATCAGAGA 540 consensus_5023#1 ------------------------------------------------------------ consensus_5023#0 GAAGAACTCGGTATTATCACAACTTCAAGAACTCATCGACGGCATGCACATAGCAACACC 600 consensus_5023#1 ------------------------------------------------------------ consensus_5023#0 GGCGGAGAGGGCCTTCGACATCGATCAGCTGGAGACGGACCTCGACC-GCCAGCTCCAGG 659 consensus_5023#1 GGGGGAAAGGGCCTTCGACATCGATCAGCTGAAAACGGACCTCGACCCGCAAGCTCCAGG 60 ** *** ************************ * ************* ** ********* consensus_5023#0 AGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGG 719 consensus_5023#1 AGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGG 120 ************************************************************ consensus_5023#0 TCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACA 779 consensus_5023#1 TCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACA 180 ************************************************************ consensus_5023#0 ATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGG 839 consensus_5023#1 ATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGG 240 ************************************************************ consensus_5023#0 AGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGA 899 consensus_5023#1 AGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGA 300 ************************************************************ consensus_5023#0 GGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCC 959 consensus_5023#1 GGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCC 360 ************************************************************ consensus_5023#0 TCTTCGGCCTCCTCCAGCTCGTCCTGCTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGG 1019 consensus_5023#1 TCTTCGGCCTCCTCCAGCTCGTCCTACTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGG 420 ************************* ********************************** consensus_5023#0 TCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCAAAGGCCTGA 1079 consensus_5023#1 TCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCGAAGGCCTGA 480 ************************************************** ********* consensus_5023#0 TGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAA 1139 consensus_5023#1 TGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAA 540 ************************************************************ consensus_5023#0 TTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTC 1199 consensus_5023#1 TTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTC 600 ************************************************************ consensus_5023#0 ATGTAAAAAAA-TGTCAGTTTGTGCATAAA-CTAGCCATCAGTCCTGTCCATTATAGGCC 1257 consensus_5023#1 TTGTAAAAAAAATGTCAGTTTGTGCATAAAACTAGCCATCAGTCCTGTCCATTAAAAAAA 660 ********** ****************** *********************** * consensus_5023#0 GAGCACGAGAACAGCAGTAAAAAATTTCCTTGGCTGACGATGAAAACGGTCGAAACTGTA 1317 consensus_5023#1 AAAAA------------------------------------------------------- 665 * * consensus_5023#0 GCATGTCTATTCGAAAAATGACTCTTGGTCGGTCGGAAATAAATTATATT 1367 consensus_5023#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||